Result of FASTA (omim) for pF1KB6403
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6403, 304 aa
  1>>>pF1KB6403 304 - 304 aa - 304 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8064+/-0.000362; mu= 14.5692+/- 0.023
 mean_var=89.8515+/-19.024, 0's: 0 Z-trim(114.6): 167  B-trim: 2571 in 2/50
 Lambda= 0.135304
 statistics sampled from 24308 (24494) to 24308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.287), width:  16
 Scan time:  7.130

The best scores are:                                      opt bits E(85289)
NP_003012 (OMIM: 603419) small glutamine-rich tetr ( 313) 1123 229.0 9.2e-60
XP_011526480 (OMIM: 603419) PREDICTED: small gluta ( 313) 1123 229.0 9.2e-60
NP_001139547 (OMIM: 611477) RNA polymerase II-asso ( 631)  307 70.0 1.4e-11
NP_078880 (OMIM: 611477) RNA polymerase II-associa ( 665)  307 70.0 1.5e-11
NP_006810 (OMIM: 605063) stress-induced-phosphopro ( 543)  285 65.6 2.5e-10
NP_001269581 (OMIM: 605063) stress-induced-phospho ( 590)  283 65.3 3.5e-10
NP_001139548 (OMIM: 611477) RNA polymerase II-asso ( 506)  274 63.4   1e-09
NP_001191213 (OMIM: 600658) serine/threonine-prote ( 477)  266 61.9 2.9e-09
NP_006238 (OMIM: 600658) serine/threonine-protein  ( 499)  266 61.9   3e-09
XP_016882424 (OMIM: 600658) PREDICTED: serine/thre ( 551)  266 61.9 3.3e-09
XP_011523470 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438)  261 60.9 5.4e-09
NP_001138238 (OMIM: 601964) dnaJ homolog subfamily ( 438)  261 60.9 5.4e-09
XP_016880483 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438)  261 60.9 5.4e-09
XP_011523471 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438)  261 60.9 5.4e-09
XP_011523469 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438)  261 60.9 5.4e-09
NP_001269582 (OMIM: 605063) stress-induced-phospho ( 519)  249 58.6 3.1e-08
NP_060338 (OMIM: 610732) tetratricopeptide repeat  ( 705)  248 58.5 4.6e-08
XP_016873439 (OMIM: 610732) PREDICTED: tetratricop ( 753)  248 58.5 4.8e-08
XP_016873438 (OMIM: 610732) PREDICTED: tetratricop ( 755)  248 58.5 4.8e-08
XP_016873437 (OMIM: 610732) PREDICTED: tetratricop ( 760)  248 58.5 4.8e-08
XP_016873436 (OMIM: 610732) PREDICTED: tetratricop ( 774)  248 58.5 4.9e-08
XP_016873435 (OMIM: 610732) PREDICTED: tetratricop ( 777)  248 58.5 4.9e-08
XP_016873434 (OMIM: 610732) PREDICTED: tetratricop ( 777)  248 58.5 4.9e-08
XP_016873432 (OMIM: 610732) PREDICTED: tetratricop ( 777)  248 58.5 4.9e-08
XP_005271661 (OMIM: 610732) PREDICTED: tetratricop ( 777)  248 58.5 4.9e-08
XP_016873433 (OMIM: 610732) PREDICTED: tetratricop ( 777)  248 58.5 4.9e-08
NP_005852 (OMIM: 607207,615768) E3 ubiquitin-prote ( 303)  241 56.8 6.1e-08
NP_003306 (OMIM: 601964) dnaJ homolog subfamily C  ( 494)  238 56.4 1.3e-07
XP_005260311 (OMIM: 616049) PREDICTED: mitochondri ( 207)  219 52.4 8.8e-07
NP_001305462 (OMIM: 610732) tetratricopeptide repe ( 711)  226 54.2   9e-07
NP_001295210 (OMIM: 611220,616279) protein unc-45  ( 850)  226 54.2   1e-06
XP_016879723 (OMIM: 611220,616279) PREDICTED: prot ( 850)  226 54.2   1e-06
NP_001253981 (OMIM: 611220,616279) protein unc-45  ( 929)  226 54.3 1.1e-06
NP_001028748 (OMIM: 611220,616279) protein unc-45  ( 929)  226 54.3 1.1e-06
NP_775259 (OMIM: 611220,616279) protein unc-45 hom ( 931)  226 54.3 1.1e-06
XP_011526803 (OMIM: 616049) PREDICTED: mitochondri ( 283)  219 52.5 1.1e-06
NP_006800 (OMIM: 616049) mitochondrial import rece ( 309)  219 52.6 1.2e-06
XP_011515547 (OMIM: 603395,615505) PREDICTED: sper ( 487)  220 52.9 1.5e-06
NP_001278262 (OMIM: 606753) tetratricopeptide repe ( 288)  215 51.8   2e-06
XP_011515543 (OMIM: 603395,615505) PREDICTED: sper ( 871)  220 53.1 2.4e-06
NP_004614 (OMIM: 606753) tetratricopeptide repeat  ( 387)  215 51.8 2.5e-06
NP_001269429 (OMIM: 601963) tetratricopeptide repe ( 292)  207 50.2 5.9e-06
NP_003305 (OMIM: 601963) tetratricopeptide repeat  ( 292)  207 50.2 5.9e-06
NP_061141 (OMIM: 611219) protein unc-45 homolog A  ( 944)  213 51.7 6.5e-06
NP_001310548 (OMIM: 611219) protein unc-45 homolog ( 944)  213 51.7 6.5e-06
XP_011520081 (OMIM: 611219) PREDICTED: protein unc ( 944)  213 51.7 6.5e-06
NP_001034764 (OMIM: 611219) protein unc-45 homolog ( 929)  212 51.5 7.4e-06
NP_001310550 (OMIM: 611219) protein unc-45 homolog ( 929)  212 51.5 7.4e-06
NP_570722 (OMIM: 127700,608706,615482) dyslexia su ( 420)  207 50.3 7.8e-06
NP_055635 (OMIM: 606081) mitochondrial import rece ( 608)  204 49.8 1.6e-05


>>NP_003012 (OMIM: 603419) small glutamine-rich tetratri  (313 aa)
 initn: 1152 init1: 736 opt: 1123  Z-score: 1193.9  bits: 229.0 E(85289): 9.2e-60
Smith-Waterman score: 1123; 58.3% identity (81.4% similar) in 312 aa overlap (1-303:1-311)

               10        20        30        40        50        60
pF1KB6 MSSIKHLVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTE
       :.. :.:.::.:.::..: .    .:: :::::::::::::.: .. ::. ::. : : :
NP_003 MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPE
               10        20        30        40        50        60

                   70          80        90       100       110    
pF1KB6 MF----TSSFCKNDVLPLSNSVP--EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIEL
       .:    :..   .:.   . . :  :: ..:..:: :::..:: ::. :::  : .::::
NP_003 IFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB6 DPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVT
       .: ::::.:::::: ::::.:. :..:::.:: ::  ::::::::::::..:::  :::.
NP_003 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KB6 SYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISMAASLMQN
        :.:::.:::.:..::::::::: ::::. ::::   :::.:.:.:::.:.:::..::.:
NP_003 YYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNN
              190       200       210       220       230       240

          240          250       260       270       280       290 
pF1KB6 PQVQQLMSGMMT---NAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHI
       ::.:::::::..   : .: :...  . .::.::::::::::::.::::::::::::..:
NP_003 PQIQQLMSGMISGGNNPLGTPGTS-PSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQI
              250       260        270       280       290         

             300     
pF1KB6 RSRSFSSSAEEHS 
       :::. :.: ...  
NP_003 RSRTPSASNDDQQE
     300       310   

>>XP_011526480 (OMIM: 603419) PREDICTED: small glutamine  (313 aa)
 initn: 1152 init1: 736 opt: 1123  Z-score: 1193.9  bits: 229.0 E(85289): 9.2e-60
Smith-Waterman score: 1123; 58.3% identity (81.4% similar) in 312 aa overlap (1-303:1-311)

               10        20        30        40        50        60
pF1KB6 MSSIKHLVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTE
       :.. :.:.::.:.::..: .    .:: :::::::::::::.: .. ::. ::. : : :
XP_011 MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPE
               10        20        30        40        50        60

                   70          80        90       100       110    
pF1KB6 MF----TSSFCKNDVLPLSNSVP--EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIEL
       .:    :..   .:.   . . :  :: ..:..:: :::..:: ::. :::  : .::::
XP_011 IFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB6 DPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVT
       .: ::::.:::::: ::::.:. :..:::.:: ::  ::::::::::::..:::  :::.
XP_011 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KB6 SYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISMAASLMQN
        :.:::.:::.:..::::::::: ::::. ::::   :::.:.:.:::.:.:::..::.:
XP_011 YYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNN
              190       200       210       220       230       240

          240          250       260       270       280       290 
pF1KB6 PQVQQLMSGMMT---NAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHI
       ::.:::::::..   : .: :...  . .::.::::::::::::.::::::::::::..:
XP_011 PQIQQLMSGMISGGNNPLGTPGTS-PSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQI
              250       260        270       280       290         

             300     
pF1KB6 RSRSFSSSAEEHS 
       :::. :.: ...  
XP_011 RSRTPSASNDDQQE
     300       310   

>>NP_001139547 (OMIM: 611477) RNA polymerase II-associat  (631 aa)
 initn: 350 init1: 291 opt: 307  Z-score: 328.7  bits: 70.0 E(85289): 1.4e-11
Smith-Waterman score: 307; 39.1% identity (69.9% similar) in 133 aa overlap (76-206:124-256)

          50        60        70        80        90       100     
pF1KB6 SPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAV
                                     ...  :  ::  ::..::...:. .:  :.
NP_001 AKLDVDRILDELDKDDSTHESLSQESESEEDGIHVDSQKALVLKEKGNKYFKQGKYDEAI
           100       110       120       130       140       150   

         110       120       130       140       150       160     
pF1KB6 DCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTA
       ::::.... :: : :   :::.:  .: ... : .::. :.:.. .:.:::.: : :  :
NP_001 DCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFA
           160       170       180       190       200       210   

         170       180       190       200         210       220   
pF1KB6 LNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKL--REVSSPTGTGLSFDMASLINNPA
       :.:.:::  .:...:.:.:.:    ..:.   : :  .: : :                 
NP_001 LQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKEADIVIKSTEGERKQI
           220       230       240       250       260       270   

           230       240       250       260       270       280   
pF1KB6 FISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPEL
                                                                   
NP_001 EAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYE
           280       290       300       310       320       330   

>--
 initn: 291 init1: 272 opt: 286  Z-score: 306.6  bits: 65.9 E(85289): 2.4e-10
Smith-Waterman score: 286; 34.4% identity (61.4% similar) in 215 aa overlap (89-286:286-498)

       60        70        80        90       100       110        
pF1KB6 TEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN
                                     ::.::. .:: .:  :..:::..:  :  :
NP_001 PKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGAN
         260       270       280       290       300       310     

      120       130       140       150       160       170        
pF1KB6 AVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQK
       :.   ::: :  :. .: .: ::: .:: .:..::::..: : : : :.:..::  ... 
NP_001 ALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFET
         320       330       340       350       360       370     

      180       190        200        210              220         
pF1KB6 ALDLDPENDSYKSNL-KIAEQKLREVS-SPTGTGL-SFDM------ASLINNPAFISMAA
       .: :.: : .  ..: :: .. :..:    ::. . ..:.      :.  :::  :..: 
NP_001 VLLLEPGNKQAVTELSKIKKKPLKKVIIEETGNLIQTIDVPDSTTAAAPENNP--INLAN
         380       390       400       410       420         430   

     230       240         250          260          270       280 
pF1KB6 SLMQNPQVQQLMSGM--MTNAIGGPAAGVGGL---TDLSSLI-QAG--QQFAQQIQQQNP
        .  .  ...  :..  .  .   : : :  .   .: :::  ::.  :.  :. ... :
NP_001 VIAATGTTSKKNSSQDDLFPTSDTPRAKVLKIEEVSDTSSLQPQASLKQDVCQSYSEKMP
           440       450       460       470       480       490   

             290       300                                         
pF1KB6 ELIEQLRNHIRSRSFSSSAEEHS                                     
         :::                                                       
NP_001 IEIEQKPAQFATTVLPPIPANSFQLESDFRQLKSSPDMLYQYLKQIEPSLYPKLFQKNLD
           500       510       520       530       540       550   

>>NP_078880 (OMIM: 611477) RNA polymerase II-associated   (665 aa)
 initn: 602 init1: 291 opt: 307  Z-score: 328.4  bits: 70.0 E(85289): 1.5e-11
Smith-Waterman score: 307; 39.1% identity (69.9% similar) in 133 aa overlap (76-206:124-256)

          50        60        70        80        90       100     
pF1KB6 SPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAV
                                     ...  :  ::  ::..::...:. .:  :.
NP_078 AKLDVDRILDELDKDDSTHESLSQESESEEDGIHVDSQKALVLKEKGNKYFKQGKYDEAI
           100       110       120       130       140       150   

         110       120       130       140       150       160     
pF1KB6 DCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTA
       ::::.... :: : :   :::.:  .: ... : .::. :.:.. .:.:::.: : :  :
NP_078 DCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFA
           160       170       180       190       200       210   

         170       180       190       200         210       220   
pF1KB6 LNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKL--REVSSPTGTGLSFDMASLINNPA
       :.:.:::  .:...:.:.:.:    ..:.   : :  .: : :                 
NP_078 LQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKEADIVIKSTEGERKQI
           220       230       240       250       260       270   

           230       240       250       260       270       280   
pF1KB6 FISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPEL
                                                                   
NP_078 EAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYE
           280       290       300       310       320       330   

>--
 initn: 353 init1: 266 opt: 274  Z-score: 293.6  bits: 63.5 E(85289): 1.3e-09
Smith-Waterman score: 274; 41.2% identity (70.2% similar) in 114 aa overlap (89-202:286-399)

       60        70        80        90       100       110        
pF1KB6 TEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN
                                     ::.::. .:: .:  :..:::..:  :  :
NP_078 PKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGAN
         260       270       280       290       300       310     

      120       130       140       150       160       170        
pF1KB6 AVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQK
       :.   ::: :  :. .: .: ::: .:: .:..::::..: : : : :.:..::  ... 
NP_078 ALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFET
         320       330       340       350       360       370     

      180       190       200       210       220       230        
pF1KB6 ALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISMAASLMQNPQVQ
       .: :.: : .  ..:.  ...: :                                    
NP_078 VLLLEPGNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPIDNPPHPGSTKPLKKV
         380       390       400       410       420       430     

>>NP_006810 (OMIM: 605063) stress-induced-phosphoprotein  (543 aa)
 initn: 314 init1: 275 opt: 285  Z-score: 306.4  bits: 65.6 E(85289): 2.5e-10
Smith-Waterman score: 285; 32.5% identity (64.4% similar) in 160 aa overlap (84-241:3-156)

            60        70        80        90       100       110   
pF1KB6 VSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIE
                                     ....::..::. ..  :   :..::..::.
NP_006                             MEQVNELKEKGNKALSVGNIDDALQCYSEAIK
                                           10        20        30  

           120       130       140       150       160       170   
pF1KB6 LDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAV
       :::.: : : ::.:: .: : :  : .:  :.. .   ..:.:.: . ::  ::.:::: 
NP_006 LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK
             40        50        60        70        80        90  

           180       190       200         210       220       230 
pF1KB6 TSYQKALDLDPENDSYKSNLKIAEQKL--REVSSPTGTGLSFDMASLINNPAFISMAASL
        .:...:  . .: . : .:.  : .:  :.  .:      :.: .: ..      . .:
NP_006 RTYEEGLKHEANNPQLKEGLQNMEARLAERKFMNP------FNMPNLYQKLESDPRTRTL
            100       110       120             130       140      

             240       250       260       270       280       290 
pF1KB6 MQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHI
       ...:  ..:.                                                  
NP_006 LSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPK
        150       160       170       180       190       200      

>--
 initn: 282 init1: 243 opt: 249  Z-score: 268.5  bits: 58.6 E(85289): 3.2e-08
Smith-Waterman score: 249; 30.5% identity (63.0% similar) in 154 aa overlap (89-236:364-516)

       60        70        80        90       100       110        
pF1KB6 TEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN
                                     :..::. ... .:  :.  ::.::. .:..
NP_006 DVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD
           340       350       360       370       380       390   

      120       130       140       150       160       170        
pF1KB6 AVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQK
       :  : ::::  .:: ..  :.::::. : ..  . :.: : . :: :.. . .:.  :::
NP_006 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK
           400       410       420       430       440       450   

      180           190       200       210         220       230  
pF1KB6 ALDLDPE----NDSYKSNLKIAEQKLREVSSPTGTGLSFD--MASLINNPAFISMAASLM
       :::::       :.:.  . .:. . ..    .      :  . .....::.  .  ...
NP_006 ALDLDSSCKEAADGYQRCM-MAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQ
           460       470        480       490       500       510  

            240       250       260       270       280       290  
pF1KB6 QNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHIR
       ..::                                                        
NP_006 KDPQALSEHLKNPVIAQKIQKLMDVGLIAIR                             
            520       530       540                                

>--
 initn: 170 init1: 157 opt: 218  Z-score: 235.8  bits: 52.5 E(85289): 2.2e-06
Smith-Waterman score: 218; 31.4% identity (61.3% similar) in 137 aa overlap (73-202:213-348)

             50        60        70        80        90       100  
pF1KB6 FKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYA
                                     :. ...::.  .: . :. ::. .:.... 
NP_006 LGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKDFD
            190       200       210       220       230       240  

            110       120       130       140       150            
pF1KB6 AAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDS-------KYSKA
       .:.  : .: ::::.: .:  :.::.  . : :.   . ::::: .         . .::
NP_006 TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA
            250       260       270       280       290       300  

         160       170       180       190       200       210     
pF1KB6 YGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDM
       :.:.: .    .:...:.  :.:.:      :  :.  . ::. :.:             
NP_006 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ-AEKILKEQERLAYINPDLAL
            310       320       330       340        350       360 

         220       230       240       250       260       270     
pF1KB6 ASLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQ
                                                                   
NP_006 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI
             370       380       390       400       410       420 

>>NP_001269581 (OMIM: 605063) stress-induced-phosphoprot  (590 aa)
 initn: 312 init1: 273 opt: 283  Z-score: 303.8  bits: 65.3 E(85289): 3.5e-10
Smith-Waterman score: 283; 32.9% identity (63.9% similar) in 158 aa overlap (86-241:52-203)

          60        70        80        90       100       110     
pF1KB6 QPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELD
                                     ..::..::. ..  :   :..::..::.::
NP_001 GQRGYDWQCKRPIRVAEVRSSLHSWSLRWVNELKEKGNKALSVGNIDDALQCYSEAIKLD
              30        40        50        60        70        80 

         120       130       140       150       160       170     
pF1KB6 PNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTS
       :.: : : ::.:: .: : :  : .:  :.. .   ..:.:.: . ::  ::.::::  .
NP_001 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT
              90       100       110       120       130       140 

         180       190       200         210       220       230   
pF1KB6 YQKALDLDPENDSYKSNLKIAEQKL--REVSSPTGTGLSFDMASLINNPAFISMAASLMQ
       :...:  . .: . : .:.  : .:  :.  .:      :.: .: ..      . .:..
NP_001 YEEGLKHEANNPQLKEGLQNMEARLAERKFMNP------FNMPNLYQKLESDPRTRTLLS
             150       160       170             180       190     

           240       250       260       270       280       290   
pF1KB6 NPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHIRS
       .:  ..:.                                                    
NP_001 DPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPKKE
         200       210       220       230       240       250     

>--
 initn: 282 init1: 243 opt: 249  Z-score: 268.0  bits: 58.6 E(85289): 3.5e-08
Smith-Waterman score: 249; 30.5% identity (63.0% similar) in 154 aa overlap (89-236:411-563)

       60        70        80        90       100       110        
pF1KB6 TEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN
                                     :..::. ... .:  :.  ::.::. .:..
NP_001 DVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD
              390       400       410       420       430       440

      120       130       140       150       160       170        
pF1KB6 AVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQK
       :  : ::::  .:: ..  :.::::. : ..  . :.: : . :: :.. . .:.  :::
NP_001 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK
              450       460       470       480       490       500

      180           190       200       210         220       230  
pF1KB6 ALDLDPE----NDSYKSNLKIAEQKLREVSSPTGTGLSFD--MASLINNPAFISMAASLM
       :::::       :.:.  . .:. . ..    .      :  . .....::.  .  ...
NP_001 ALDLDSSCKEAADGYQRCM-MAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQ
              510        520       530       540       550         

            240       250       260       270       280       290  
pF1KB6 QNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHIR
       ..::                                                        
NP_001 KDPQALSEHLKNPVIAQKIQKLMDVGLIAIR                             
     560       570       580       590                             

>--
 initn: 170 init1: 157 opt: 218  Z-score: 235.3  bits: 52.6 E(85289): 2.3e-06
Smith-Waterman score: 218; 31.4% identity (61.3% similar) in 137 aa overlap (73-202:260-395)

             50        60        70        80        90       100  
pF1KB6 FKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYA
                                     :. ...::.  .: . :. ::. .:.... 
NP_001 LGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKDFD
     230       240       250       260       270       280         

            110       120       130       140       150            
pF1KB6 AAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDS-------KYSKA
       .:.  : .: ::::.: .:  :.::.  . : :.   . ::::: .         . .::
NP_001 TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA
     290       300       310       320       330       340         

         160       170       180       190       200       210     
pF1KB6 YGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDM
       :.:.: .    .:...:.  :.:.:      :  :.  . ::. :.:             
NP_001 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ-AEKILKEQERLAYINPDLAL
     350       360       370       380        390       400        

         220       230       240       250       260       270     
pF1KB6 ASLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQ
                                                                   
NP_001 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI
      410       420       430       440       450       460        

>>NP_001139548 (OMIM: 611477) RNA polymerase II-associat  (506 aa)
 initn: 451 init1: 266 opt: 274  Z-score: 295.3  bits: 63.4 E(85289): 1e-09
Smith-Waterman score: 279; 32.4% identity (62.2% similar) in 185 aa overlap (30-202:56-240)

                10        20        30        40        50         
pF1KB6  MSSIKHLVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLA-----V
                                     ..:: : .  : :... :.. . .     .
NP_001 VAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKI
          30        40        50        60        70        80     

           60        70               80        90       100       
pF1KB6 SQPLTEMFTSSFCKNDVLPLSNS-------VPEDVGKADQLKDEGNNHMKEENYAAAVDC
       :: :.   .:   . :..  :.        . ..  .: . ::.::. .:: .:  :..:
NP_001 SQALASKENSYPKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIEC
          90       100       110       120       130       140     

       110       120       130       140       150       160       
pF1KB6 YTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALN
       ::..:  :  ::.   ::: :  :. .: .: ::: .:: .:..::::..: : : : :.
NP_001 YTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLG
         150       160       170       180       190       200     

       170       180       190       200       210       220       
pF1KB6 KFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISM
       :..::  ... .: :.: : .  ..:.  ...: :                         
NP_001 KLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPIDNPP
         210       220       230       240       250       260     

       230       240       250       260       270       280       
pF1KB6 AASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQL
                                                                   
NP_001 HPGSTKPLKKVIIEETGNLIQTIDVPDSTTAAAPENNPINLANVIAATGTTSKKNSSQDD
         270       280       290       300       310       320     

>>NP_001191213 (OMIM: 600658) serine/threonine-protein p  (477 aa)
 initn: 254 init1: 254 opt: 266  Z-score: 287.2  bits: 61.9 E(85289): 2.9e-09
Smith-Waterman score: 266; 35.3% identity (64.7% similar) in 136 aa overlap (73-202:14-149)

             50        60        70        80          90       100
pF1KB6 FKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPED--VGKADQLKDEGNNHMKEEN
                                     :  .  : :  . .:..:: ..:...: ..
NP_001                  MAMAEGERTECAEPPRDEPPADGALKRAEELKTQANDYFKAKD
                                10        20        30        40   

              110       120       130       140       150       160
pF1KB6 YAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMG
       :  :.  :.:::::.:.::.:: ::. :  .   :  :. :  .:: .:.:: :.: : .
NP_001 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA
            50        60        70        80        90       100   

              170       180           190       200       210      
pF1KB6 LALTALNKFEEAVTSYQKALDLDPENDS----YKSNLKIAEQKLREVSSPTGTGLSFDMA
        .  ::.::. :. .:. .. . :.. .    :.   ::..::  :              
NP_001 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD
           110       120       130       140       150       160   

        220       230       240       250       260       270      
pF1KB6 SLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQI
                                                                   
NP_001 SLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQTEKITVCGDTHG
           170       180       190       200       210       220   

>>NP_006238 (OMIM: 600658) serine/threonine-protein phos  (499 aa)
 initn: 254 init1: 254 opt: 266  Z-score: 286.9  bits: 61.9 E(85289): 3e-09
Smith-Waterman score: 266; 35.3% identity (64.7% similar) in 136 aa overlap (73-202:14-149)

             50        60        70        80          90       100
pF1KB6 FKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPED--VGKADQLKDEGNNHMKEEN
                                     :  .  : :  . .:..:: ..:...: ..
NP_006                  MAMAEGERTECAEPPRDEPPADGALKRAEELKTQANDYFKAKD
                                10        20        30        40   

              110       120       130       140       150       160
pF1KB6 YAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMG
       :  :.  :.:::::.:.::.:: ::. :  .   :  :. :  .:: .:.:: :.: : .
NP_006 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA
            50        60        70        80        90       100   

              170       180           190       200       210      
pF1KB6 LALTALNKFEEAVTSYQKALDLDPENDS----YKSNLKIAEQKLREVSSPTGTGLSFDMA
        .  ::.::. :. .:. .. . :.. .    :.   ::..::  :              
NP_006 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD
           110       120       130       140       150       160   

        220       230       240       250       260       270      
pF1KB6 SLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQI
                                                                   
NP_006 SLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL
           170       180       190       200       210       220   

>>XP_016882424 (OMIM: 600658) PREDICTED: serine/threonin  (551 aa)
 initn: 254 init1: 254 opt: 266  Z-score: 286.3  bits: 61.9 E(85289): 3.3e-09
Smith-Waterman score: 266; 35.3% identity (64.7% similar) in 136 aa overlap (73-202:14-149)

             50        60        70        80          90       100
pF1KB6 FKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPED--VGKADQLKDEGNNHMKEEN
                                     :  .  : :  . .:..:: ..:...: ..
XP_016                  MAMAEGERTECAEPPRDEPPADGALKRAEELKTQANDYFKAKD
                                10        20        30        40   

              110       120       130       140       150       160
pF1KB6 YAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMG
       :  :.  :.:::::.:.::.:: ::. :  .   :  :. :  .:: .:.:: :.: : .
XP_016 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA
            50        60        70        80        90       100   

              170       180           190       200       210      
pF1KB6 LALTALNKFEEAVTSYQKALDLDPENDS----YKSNLKIAEQKLREVSSPTGTGLSFDMA
        .  ::.::. :. .:. .. . :.. .    :.   ::..::  :              
XP_016 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD
           110       120       130       140       150       160   

        220       230       240       250       260       270      
pF1KB6 SLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQI
                                                                   
XP_016 SLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL
           170       180       190       200       210       220   




304 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:04:49 2016 done: Fri Nov  4 17:04:50 2016
 Total Scan time:  7.130 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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