hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20090425/iprscan-20090425-05333456/chunk_1/iprscan-20090425-05333456.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB6475 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 345.9 2.6e-99 1 SM00219 11.8 7.3e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 13 300 .. 1 280 [] 11.8 7.3e-12 SM00220 1/1 13 300 .. 1 231 [] 345.9 2.6e-99 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 13 to 300: score 11.8, E = 7.3e-12 *->ltlgkkLGeGaFGeVykGtlk....ieVAVKtLkeda.....keeFl + ++GeGa+G+V+k++ +++++ VA K ++ +++++ + pF1KB6475 13 YECVAEIGEGAYGKVFKARDLknggRFVALKRVRVQTgeegmPLSTI 59 rEakiMkklGg..kHpNiVkLlGvcteegrr...FmevePlmivmEymeg rE ++++l + +HpN+V+L+ vct + r+++ l +v+E+++ pF1KB6475 60 REVAVLRHL-EtfEHPNVVRLFDVCTVS--RtdrE---TKLTLVFEHVDQ 103 GdLldyLrknrpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcL dL yL k + ++++++ ++++Q +G ++L+s+++vHRDL N+L pF1KB6475 104 -DLTTYLDKVPEPgVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNIL 152 vgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAP v++ +++K +DFGL+R + ++ + + + + AP pF1KB6475 153 VTSSGQIKLADFGLARIY----------SFQMALT--SVV--VTLWYRAP 188 EslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk E+l + + + D WS G E+f + ++ g s+ + l ++ pF1KB6475 189 EVLLQSSYATPVDLWSVGCIFAEMFRR-KPLFRG-----SSDVDQLGKIL 232 kGyRlpkPendlpiS.....................svtCPdelYd.lMl + lp e+ +++ +++ ++++ ++ +++vt del ++l l pF1KB6475 233 DVIGLPGEED----WprdvalprqafhsksaqpiekFVTDIDELGKdLLL 278 qCWaedPedRPtFsel..verl<-* +C ++P++R + ++ ++ pF1KB6475 279 KCLTFNPAKRISAYSAlsHPYF 300 SM00220: domain 1 of 1, from 13 to 300: score 345.9, E = 2.6e-99 *->YellkklGkGaFGkVylardkk.tgrlvAiKvik.........eril Ye + ++G+Ga+GkV++ard k+ gr vA+K+++ ++++++ + +++ pF1KB6475 13 YECVAEIGEGAYGKVFKARDLKnGGRFVALKRVRvqtgeegmpLSTI 59 rEikiLkk....dHPNIVkLydvfed......dklylVmEyceGdlGdLf rE+++L++ ++ HPN+V+L+dv+ +++++++kl lV+E++++ dL pF1KB6475 60 REVAVLRHletfEHPNVVRLFDVCTVsrtdreTKLTLVFEHVDQ---DLT 106 dllkkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiL ++l+k + +g + ++++ ++ Q+l++L++LHs++++HRDLKP+NiL pF1KB6475 107 TYLDKVPEPG----VPTeTIKDMMFQLLRGLDFLHSHRVVHRDLKPQNIL 152 Lds..hvKlaDFGlArql......ttfvGTpeYmAPEvl...gYgkpavD ++s++++KlaDFGlAr+++ + t++v+T++Y+APEvl +++Y + +vD pF1KB6475 153 VTSsgQIKLADFGLARIYsfqmalTSVVVTLWYRAPEVLlqsSYAT-PVD 201 iWSlGcilyElltGkpPFp......qldlifkkig............... WS+Gci++E++ +kp+F+++++ +ql +i+++ig +++++++++ ++ pF1KB6475 202 LWSVGCIFAEMFRRKPLFRgssdvdQLGKILDVIGlpgeedwprdvalpr 251 ..................SpeakdLikklLvkdPekRlta.eaLedeldi ++++ + ++ ++ ++ +kdL+ k+L+++P+kR++a aL pF1KB6475 252 qafhsksaqpiekfvtdiDELGKDLLLKCLTFNPAKRISAySALS----- 296 kaHPff<-* HP+f pF1KB6475 297 --HPYF 300 //