Result of FASTA (omim) for pF1KB6449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6449, 317 aa
  1>>>pF1KB6449 317 - 317 aa - 317 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5655+/-0.00042; mu= 10.4510+/- 0.026
 mean_var=177.2545+/-36.773, 0's: 0 Z-trim(116.9): 510  B-trim: 83 in 1/50
 Lambda= 0.096333
 statistics sampled from 27726 (28360) to 27726 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.333), width:  16
 Scan time:  7.040

The best scores are:                                      opt bits E(85289)
NP_065390 (OMIM: 164008,612132) NF-kappa-B inhibit ( 317) 2141 309.9 4.4e-84
NP_004547 (OMIM: 604548) NF-kappa-B inhibitor epsi ( 500)  483 79.7 1.4e-14
XP_011530310 (OMIM: 164011,616576) PREDICTED: nucl ( 916)  458 76.5 2.2e-13
NP_001158884 (OMIM: 164011,616576) nuclear factor  ( 968)  458 76.6 2.3e-13
NP_001306155 (OMIM: 164011,616576) nuclear factor  ( 968)  458 76.6 2.3e-13
NP_003989 (OMIM: 164011,616576) nuclear factor NF- ( 969)  458 76.6 2.3e-13
XP_011530308 (OMIM: 164011,616576) PREDICTED: nucl ( 976)  458 76.6 2.3e-13
XP_011538132 (OMIM: 164012,615577) PREDICTED: nucl ( 755)  396 67.8 7.8e-11
XP_011538133 (OMIM: 164012,615577) PREDICTED: nucl ( 755)  396 67.8 7.8e-11
NP_001309864 (OMIM: 164012,615577) nuclear factor  ( 858)  396 67.9 8.5e-11
NP_002493 (OMIM: 164012,615577) nuclear factor NF- ( 899)  396 67.9 8.7e-11
NP_001248332 (OMIM: 164012,615577) nuclear factor  ( 899)  396 67.9 8.7e-11
NP_001275653 (OMIM: 164012,615577) nuclear factor  ( 899)  396 67.9 8.7e-11
NP_001070962 (OMIM: 164012,615577) nuclear factor  ( 900)  396 67.9 8.7e-11
NP_001309863 (OMIM: 164012,615577) nuclear factor  ( 900)  396 67.9 8.7e-11
XP_016871767 (OMIM: 164012,615577) PREDICTED: nucl (1081)  396 68.0 9.8e-11
XP_016882599 (OMIM: 109560) PREDICTED: B-cell lymp ( 356)  363 62.8 1.2e-09
XP_011525502 (OMIM: 109560) PREDICTED: B-cell lymp ( 378)  363 62.9 1.2e-09
XP_016882598 (OMIM: 109560) PREDICTED: B-cell lymp ( 434)  363 62.9 1.3e-09
NP_005169 (OMIM: 109560) B-cell lymphoma 3 protein ( 454)  363 63.0 1.4e-09
XP_011525499 (OMIM: 109560) PREDICTED: B-cell lymp ( 539)  363 63.1 1.5e-09
XP_011525500 (OMIM: 109560) PREDICTED: B-cell lymp ( 696)  363 63.2 1.8e-09
XP_016865994 (OMIM: 610583) PREDICTED: ankyrin rep ( 659)  287 52.6 2.6e-06
XP_011533901 (OMIM: 610583) PREDICTED: ankyrin rep ( 694)  286 52.5   3e-06
XP_006723290 (OMIM: 604495) PREDICTED: NF-kappa-B  ( 351)  280 51.3 3.4e-06
NP_001229743 (OMIM: 610583) ankyrin repeat domain- ( 663)  269 50.1 1.5e-05
XP_011533902 (OMIM: 610583) PREDICTED: ankyrin rep ( 663)  269 50.1 1.5e-05
NP_001230045 (OMIM: 604495) NF-kappa-B inhibitor b ( 270)  263 48.8 1.5e-05
XP_006723289 (OMIM: 604495) PREDICTED: NF-kappa-B  ( 324)  263 48.9 1.7e-05
NP_002494 (OMIM: 604495) NF-kappa-B inhibitor beta ( 356)  263 48.9 1.8e-05
XP_011512738 (OMIM: 608994) PREDICTED: ankyrin rep (1100)  269 50.4   2e-05
XP_005249021 (OMIM: 608994) PREDICTED: ankyrin rep (1155)  269 50.4 2.1e-05
XP_006715099 (OMIM: 608994) PREDICTED: ankyrin rep (1156)  269 50.4 2.1e-05
XP_011512735 (OMIM: 608994) PREDICTED: ankyrin rep (1162)  269 50.4 2.1e-05
XP_011512734 (OMIM: 608994) PREDICTED: ankyrin rep (1165)  269 50.4 2.1e-05
XP_011512733 (OMIM: 608994) PREDICTED: ankyrin rep (1166)  269 50.4 2.1e-05
NP_001138994 (OMIM: 606586) ankycorbin isoform b [ ( 951)  266 49.9 2.5e-05
XP_016864824 (OMIM: 606586) PREDICTED: ankycorbin  ( 951)  266 49.9 2.5e-05
XP_016865992 (OMIM: 610583) PREDICTED: ankyrin rep ( 661)  262 49.1 2.9e-05
XP_011533899 (OMIM: 610583) PREDICTED: ankyrin rep ( 719)  262 49.2 3.1e-05
NP_065815 (OMIM: 612184) caskin-1 [Homo sapiens]   (1431)  266 50.1 3.2e-05
XP_011512327 (OMIM: 606586) PREDICTED: ankycorbin  ( 957)  263 49.5 3.3e-05
XP_006714532 (OMIM: 606586) PREDICTED: ankycorbin  ( 980)  263 49.5 3.4e-05
XP_011512323 (OMIM: 606586) PREDICTED: ankycorbin  ( 980)  263 49.5 3.4e-05
XP_011512324 (OMIM: 606586) PREDICTED: ankycorbin  ( 980)  263 49.5 3.4e-05
NP_056392 (OMIM: 606586) ankycorbin isoform a [Hom ( 980)  263 49.5 3.4e-05
XP_011512320 (OMIM: 606586) PREDICTED: ankycorbin  ( 980)  263 49.5 3.4e-05
XP_011512322 (OMIM: 606586) PREDICTED: ankycorbin  ( 980)  263 49.5 3.4e-05
NP_001138992 (OMIM: 606586) ankycorbin isoform a [ ( 980)  263 49.5 3.4e-05
NP_001138993 (OMIM: 606586) ankycorbin isoform a [ ( 980)  263 49.5 3.4e-05


>>NP_065390 (OMIM: 164008,612132) NF-kappa-B inhibitor a  (317 aa)
 initn: 2141 init1: 2141 opt: 2141  Z-score: 1630.5  bits: 309.9 E(85289): 4.4e-84
Smith-Waterman score: 2141; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KB6 MFQAAERPQEWAMEGPRDGLKKERLLDDRHDSGLDSMKDEEYEQMVKELQEIRLEPQEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MFQAAERPQEWAMEGPRDGLKKERLLDDRHDSGLDSMKDEEYEQMVKELQEIRLEPQEVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE
              250       260       270       280       290       300

              310       
pF1KB6 DELPYDDCVFGGQRLTL
       :::::::::::::::::
NP_065 DELPYDDCVFGGQRLTL
              310       

>>NP_004547 (OMIM: 604548) NF-kappa-B inhibitor epsilon   (500 aa)
 initn: 457 init1: 237 opt: 483  Z-score: 382.9  bits: 79.7 E(85289): 1.4e-14
Smith-Waterman score: 483; 37.6% identity (65.6% similar) in 250 aa overlap (70-315:255-496)

      40        50        60        70        80        90         
pF1KB6 EEYEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG
                                     ..::::...:::.:::  :. .  .  .  
NP_004 GGPEAEDPAPRLPLPHVGALSPQQLEALTYISEDGDTLVHLAVIHEAPAVLLCCLALLPQ
          230       240       250       260       270       280    

     100       110       120       130       140       150         
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       ..  :..:::: :: :::::  .::  ..::.  : .  :.: .:.: ::.::..  :: 
NP_004 EV--LDIQNNLYQTALHLAVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLAC
            290       300       310       320       330       340  

     160       170           180       190       200       210     
pF1KB6 VGVLTQSCTTPHL---HSI-LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC
       .  : ..   :     ::. :.  :..: .:::.:...    ..:::.  :::...::  
NP_004 ARCLLEGRPEPGRGTSHSLDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGT
            350       360       370       380       390       400  

         220       230       240       250       260       270     
pF1KB6 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE
       .:.:::::::. :.  ::..::. ::.:.    .: .: .:. ::    :.. : .   .
NP_004 SGKTALHLAVETQERGLVQFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGAD
            410       420       430       440       450       460  

         280       290       300       310         
pF1KB6 NLQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL  
       .:  : . :::    : ...:: .   ::.::  ..:. :    
NP_004 SL--LRNVEDE----TPQDLTEESLVLLPFDDLKISGKLLLCTD
              470           480       490       500

>>XP_011530310 (OMIM: 164011,616576) PREDICTED: nuclear   (916 aa)
 initn: 434 init1: 164 opt: 458  Z-score: 361.1  bits: 76.5 E(85289): 2.2e-13
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:489-715)

              50        60        70        80        90       100 
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
                                     :.::: ::::::: .. :. .... ..: .
XP_011 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
      460       470       480       490       500       510        

               110       120       130       140       150         
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       .  ..:..:.: ::::::::::.: ...: :: :: :  : :  ::. :::: ..:    
XP_011 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
      520       530       540       550       560       570        

     160       170       180       190       200       210         
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
       ...: .   .  :   :   : .: . .::: . . :  . :::. ::::::::  .:::
XP_011 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
      580       590          600       610       620       630     

     220       230        240       250       260       270        
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
       ::::::. .: .:.. :::.  : :. .::.: .: ... :: :::.   :     .   
XP_011 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
         640       650       660       670       680       690     

      280        290       300       310                           
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL                    
         :  :. :  :: .. . .  :::                                   
XP_011 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
              700       710       720       730       740       750

>>NP_001158884 (OMIM: 164011,616576) nuclear factor NF-k  (968 aa)
 initn: 434 init1: 164 opt: 458  Z-score: 360.8  bits: 76.6 E(85289): 2.3e-13
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:541-767)

              50        60        70        80        90       100 
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
                                     :.::: ::::::: .. :. .... ..: .
NP_001 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
              520       530       540       550       560       570

               110       120       130       140       150         
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       .  ..:..:.: ::::::::::.: ...: :: :: :  : :  ::. :::: ..:    
NP_001 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
              580       590       600       610       620       630

     160       170       180       190       200       210         
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
       ...: .   .  :   :   : .: . .::: . . :  . :::. ::::::::  .:::
NP_001 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
              640          650       660       670       680       

     220       230        240       250       260       270        
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
       ::::::. .: .:.. :::.  : :. .::.: .: ... :: :::.   :     .   
NP_001 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
       690       700       710       720       730       740       

      280        290       300       310                           
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL                    
         :  :. :  :: .. . .  :::                                   
NP_001 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
            750       760       770       780       790       800  

>>NP_001306155 (OMIM: 164011,616576) nuclear factor NF-k  (968 aa)
 initn: 434 init1: 164 opt: 458  Z-score: 360.8  bits: 76.6 E(85289): 2.3e-13
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:541-767)

              50        60        70        80        90       100 
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
                                     :.::: ::::::: .. :. .... ..: .
NP_001 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
              520       530       540       550       560       570

               110       120       130       140       150         
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       .  ..:..:.: ::::::::::.: ...: :: :: :  : :  ::. :::: ..:    
NP_001 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
              580       590       600       610       620       630

     160       170       180       190       200       210         
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
       ...: .   .  :   :   : .: . .::: . . :  . :::. ::::::::  .:::
NP_001 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
              640          650       660       670       680       

     220       230        240       250       260       270        
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
       ::::::. .: .:.. :::.  : :. .::.: .: ... :: :::.   :     .   
NP_001 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
       690       700       710       720       730       740       

      280        290       300       310                           
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL                    
         :  :. :  :: .. . .  :::                                   
NP_001 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
            750       760       770       780       790       800  

>>NP_003989 (OMIM: 164011,616576) nuclear factor NF-kapp  (969 aa)
 initn: 434 init1: 164 opt: 458  Z-score: 360.8  bits: 76.6 E(85289): 2.3e-13
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:542-768)

              50        60        70        80        90       100 
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
                                     :.::: ::::::: .. :. .... ..: .
NP_003 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
             520       530       540       550       560       570 

               110       120       130       140       150         
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       .  ..:..:.: ::::::::::.: ...: :: :: :  : :  ::. :::: ..:    
NP_003 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
             580       590       600       610       620       630 

     160       170       180       190       200       210         
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
       ...: .   .  :   :   : .: . .::: . . :  . :::. ::::::::  .:::
NP_003 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
             640          650       660       670       680        

     220       230        240       250       260       270        
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
       ::::::. .: .:.. :::.  : :. .::.: .: ... :: :::.   :     .   
NP_003 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
      690       700       710       720       730       740        

      280        290       300       310                           
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL                    
         :  :. :  :: .. . .  :::                                   
NP_003 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
           750       760       770       780       790       800   

>>XP_011530308 (OMIM: 164011,616576) PREDICTED: nuclear   (976 aa)
 initn: 434 init1: 164 opt: 458  Z-score: 360.8  bits: 76.6 E(85289): 2.3e-13
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:549-775)

              50        60        70        80        90       100 
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
                                     :.::: ::::::: .. :. .... ..: .
XP_011 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
      520       530       540       550       560       570        

               110       120       130       140       150         
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       .  ..:..:.: ::::::::::.: ...: :: :: :  : :  ::. :::: ..:    
XP_011 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
      580       590       600       610       620       630        

     160       170       180       190       200       210         
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
       ...: .   .  :   :   : .: . .::: . . :  . :::. ::::::::  .:::
XP_011 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
      640       650          660       670       680       690     

     220       230        240       250       260       270        
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
       ::::::. .: .:.. :::.  : :. .::.: .: ... :: :::.   :     .   
XP_011 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
         700       710       720       730       740       750     

      280        290       300       310                           
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL                    
         :  :. :  :: .. . .  :::                                   
XP_011 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
              760       770       780       790       800       810

>>XP_011538132 (OMIM: 164012,615577) PREDICTED: nuclear   (755 aa)
 initn: 385 init1: 178 opt: 396  Z-score: 315.5  bits: 67.8 E(85289): 7.8e-11
Smith-Waterman score: 399; 37.8% identity (63.4% similar) in 238 aa overlap (72-297:341-576)

              50        60        70        80        90           
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG--
                                     :.::. ::::::: . ..  ...  ..   
XP_011 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
              320       330       340       350       360       370

     100       110       120       130       140       150         
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       ::. .:. :.:.::::::::::.:  ..  :: .: :: : : .:.. .::: . :  : 
XP_011 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
              380       390       400       410       420       430

       160       170       180       190       200       210       
pF1KB6 --VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG
         . .: ::  .: . ..:.  ...:   .:::        ..:::. ::.:.: :  .:
XP_011 ELLRALLQS-GAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGG
               440       450       460       470       480         

       220       230        240       250         260        270   
pF1KB6 RTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLT--WGRPS-TRIQQQLG-QL
       :::::::.....  ::. :. :  :.::  :. : .: .:.   : :. ::.  . : ..
XP_011 RTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADI
     490       500       510       520       530       540         

               280       290       300       310                   
pF1KB6 TLEN---LQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL            
         ::   :  ::     .: :..::  :                                
XP_011 HAENEEPLCPLPSPPTSDS-DSDSEGPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNT
     550       560        570       580       590       600        

>>XP_011538133 (OMIM: 164012,615577) PREDICTED: nuclear   (755 aa)
 initn: 385 init1: 178 opt: 396  Z-score: 315.5  bits: 67.8 E(85289): 7.8e-11
Smith-Waterman score: 399; 37.8% identity (63.4% similar) in 238 aa overlap (72-297:341-576)

              50        60        70        80        90           
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG--
                                     :.::. ::::::: . ..  ...  ..   
XP_011 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
              320       330       340       350       360       370

     100       110       120       130       140       150         
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       ::. .:. :.:.::::::::::.:  ..  :: .: :: : : .:.. .::: . :  : 
XP_011 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
              380       390       400       410       420       430

       160       170       180       190       200       210       
pF1KB6 --VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG
         . .: ::  .: . ..:.  ...:   .:::        ..:::. ::.:.: :  .:
XP_011 ELLRALLQS-GAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGG
               440       450       460       470       480         

       220       230        240       250         260        270   
pF1KB6 RTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLT--WGRPS-TRIQQQLG-QL
       :::::::.....  ::. :. :  :.::  :. : .: .:.   : :. ::.  . : ..
XP_011 RTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADI
     490       500       510       520       530       540         

               280       290       300       310                   
pF1KB6 TLEN---LQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL            
         ::   :  ::     .: :..::  :                                
XP_011 HAENEEPLCPLPSPPTSDS-DSDSEGPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNT
     550       560        570       580       590       600        

>>NP_001309864 (OMIM: 164012,615577) nuclear factor NF-k  (858 aa)
 initn: 385 init1: 178 opt: 396  Z-score: 314.9  bits: 67.9 E(85289): 8.5e-11
Smith-Waterman score: 399; 37.8% identity (63.4% similar) in 238 aa overlap (72-297:444-679)

              50        60        70        80        90           
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG--
                                     :.::. ::::::: . ..  ...  ..   
NP_001 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
           420       430       440       450       460       470   

     100       110       120       130       140       150         
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       ::. .:. :.:.::::::::::.:  ..  :: .: :: : : .:.. .::: . :  : 
NP_001 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
           480       490       500       510       520       530   

       160       170       180       190       200       210       
pF1KB6 --VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG
         . .: ::  .: . ..:.  ...:   .:::        ..:::. ::.:.: :  .:
NP_001 ELLRALLQS-GAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGG
           540        550       560       570       580       590  

       220       230        240       250         260        270   
pF1KB6 RTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLT--WGRPS-TRIQQQLG-QL
       :::::::.....  ::. :. :  :.::  :. : .: .:.   : :. ::.  . : ..
NP_001 RTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADI
            600       610       620       630       640       650  

               280       290       300       310                   
pF1KB6 TLEN---LQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL            
         ::   :  ::     .: :..::  :                                
NP_001 HAENEEPLCPLPSPPTSDS-DSDSEGPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNT
            660       670        680       690       700       710 




317 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:31:52 2016 done: Fri Nov  4 17:31:54 2016
 Total Scan time:  7.040 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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