Result of FASTA (ccds) for pF1KB6449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6449, 317 aa
  1>>>pF1KB6449 317 - 317 aa - 317 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4351+/-0.000914; mu= 10.8753+/- 0.054
 mean_var=124.7155+/-25.087, 0's: 0 Z-trim(109.9): 174  B-trim: 10 in 1/50
 Lambda= 0.114846
 statistics sampled from 10993 (11188) to 10993 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.344), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS9656.1 NFKBIA gene_id:4792|Hs108|chr14         ( 317) 2141 365.8 2.5e-101
CCDS34463.1 NFKBIE gene_id:4794|Hs108|chr6         ( 500)  483 91.2 1.8e-18
CCDS54783.1 NFKB1 gene_id:4790|Hs108|chr4          ( 968)  458 87.4 5.1e-17
CCDS3657.1 NFKB1 gene_id:4790|Hs108|chr4           ( 969)  458 87.4 5.1e-17
CCDS41565.1 NFKB2 gene_id:4791|Hs108|chr10         ( 899)  396 77.1 5.9e-14
CCDS41564.1 NFKB2 gene_id:4791|Hs108|chr10         ( 900)  396 77.1 5.9e-14
CCDS12642.2 BCL3 gene_id:602|Hs108|chr19           ( 454)  363 71.3 1.6e-12


>>CCDS9656.1 NFKBIA gene_id:4792|Hs108|chr14              (317 aa)
 initn: 2141 init1: 2141 opt: 2141  Z-score: 1932.6  bits: 365.8 E(32554): 2.5e-101
Smith-Waterman score: 2141; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KB6 MFQAAERPQEWAMEGPRDGLKKERLLDDRHDSGLDSMKDEEYEQMVKELQEIRLEPQEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MFQAAERPQEWAMEGPRDGLKKERLLDDRHDSGLDSMKDEEYEQMVKELQEIRLEPQEVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 RGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE
              250       260       270       280       290       300

              310       
pF1KB6 DELPYDDCVFGGQRLTL
       :::::::::::::::::
CCDS96 DELPYDDCVFGGQRLTL
              310       

>>CCDS34463.1 NFKBIE gene_id:4794|Hs108|chr6              (500 aa)
 initn: 457 init1: 237 opt: 483  Z-score: 445.3  bits: 91.2 E(32554): 1.8e-18
Smith-Waterman score: 483; 37.6% identity (65.6% similar) in 250 aa overlap (70-315:255-496)

      40        50        60        70        80        90         
pF1KB6 EEYEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG
                                     ..::::...:::.:::  :. .  .  .  
CCDS34 GGPEAEDPAPRLPLPHVGALSPQQLEALTYISEDGDTLVHLAVIHEAPAVLLCCLALLPQ
          230       240       250       260       270       280    

     100       110       120       130       140       150         
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       ..  :..:::: :: :::::  .::  ..::.  : .  :.: .:.: ::.::..  :: 
CCDS34 EV--LDIQNNLYQTALHLAVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLAC
            290       300       310       320       330       340  

     160       170           180       190       200       210     
pF1KB6 VGVLTQSCTTPHL---HSI-LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC
       .  : ..   :     ::. :.  :..: .:::.:...    ..:::.  :::...::  
CCDS34 ARCLLEGRPEPGRGTSHSLDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGT
            350       360       370       380       390       400  

         220       230       240       250       260       270     
pF1KB6 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE
       .:.:::::::. :.  ::..::. ::.:.    .: .: .:. ::    :.. : .   .
CCDS34 SGKTALHLAVETQERGLVQFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGAD
            410       420       430       440       450       460  

         280       290       300       310         
pF1KB6 NLQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL  
       .:  : . :::    : ...:: .   ::.::  ..:. :    
CCDS34 SL--LRNVEDE----TPQDLTEESLVLLPFDDLKISGKLLLCTD
              470           480       490       500

>>CCDS54783.1 NFKB1 gene_id:4790|Hs108|chr4               (968 aa)
 initn: 434 init1: 164 opt: 458  Z-score: 419.1  bits: 87.4 E(32554): 5.1e-17
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:541-767)

              50        60        70        80        90       100 
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
                                     :.::: ::::::: .. :. .... ..: .
CCDS54 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
              520       530       540       550       560       570

               110       120       130       140       150         
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       .  ..:..:.: ::::::::::.: ...: :: :: :  : :  ::. :::: ..:    
CCDS54 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
              580       590       600       610       620       630

     160       170       180       190       200       210         
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
       ...: .   .  :   :   : .: . .::: . . :  . :::. ::::::::  .:::
CCDS54 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
              640          650       660       670       680       

     220       230        240       250       260       270        
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
       ::::::. .: .:.. :::.  : :. .::.: .: ... :: :::.   :     .   
CCDS54 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
       690       700       710       720       730       740       

      280        290       300       310                           
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL                    
         :  :. :  :: .. . .  :::                                   
CCDS54 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
            750       760       770       780       790       800  

>>CCDS3657.1 NFKB1 gene_id:4790|Hs108|chr4                (969 aa)
 initn: 434 init1: 164 opt: 458  Z-score: 419.1  bits: 87.4 E(32554): 5.1e-17
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:542-768)

              50        60        70        80        90       100 
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
                                     :.::: ::::::: .. :. .... ..: .
CCDS36 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
             520       530       540       550       560       570 

               110       120       130       140       150         
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       .  ..:..:.: ::::::::::.: ...: :: :: :  : :  ::. :::: ..:    
CCDS36 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
             580       590       600       610       620       630 

     160       170       180       190       200       210         
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
       ...: .   .  :   :   : .: . .::: . . :  . :::. ::::::::  .:::
CCDS36 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
             640          650       660       670       680        

     220       230        240       250       260       270        
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
       ::::::. .: .:.. :::.  : :. .::.: .: ... :: :::.   :     .   
CCDS36 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
      690       700       710       720       730       740        

      280        290       300       310                           
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL                    
         :  :. :  :: .. . .  :::                                   
CCDS36 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
           750       760       770       780       790       800   

>>CCDS41565.1 NFKB2 gene_id:4791|Hs108|chr10              (899 aa)
 initn: 385 init1: 178 opt: 396  Z-score: 364.0  bits: 77.1 E(32554): 5.9e-14
Smith-Waterman score: 399; 37.8% identity (63.4% similar) in 238 aa overlap (72-297:486-721)

              50        60        70        80        90           
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG--
                                     :.::. ::::::: . ..  ...  ..   
CCDS41 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
         460       470       480       490       500       510     

     100       110       120       130       140       150         
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       ::. .:. :.:.::::::::::.:  ..  :: .: :: : : .:.. .::: . :  : 
CCDS41 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
         520       530       540       550       560       570     

       160       170       180       190       200       210       
pF1KB6 --VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG
         . .: ::  .: . ..:.  ...:   .:::        ..:::. ::.:.: :  .:
CCDS41 ELLRALLQS-GAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGG
         580        590       600       610       620       630    

       220       230        240       250         260        270   
pF1KB6 RTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLT--WGRPS-TRIQQQLG-QL
       :::::::.....  ::. :. :  :.::  :. : .: .:.   : :. ::.  . : ..
CCDS41 RTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADI
          640       650       660       670       680       690    

               280       290       300       310                   
pF1KB6 TLEN---LQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL            
         ::   :  ::     .: :..::  :                                
CCDS41 HAENEEPLCPLPSPPTSDS-DSDSEGPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNT
          700       710        720       730       740       750   

>>CCDS41564.1 NFKB2 gene_id:4791|Hs108|chr10              (900 aa)
 initn: 385 init1: 178 opt: 396  Z-score: 364.0  bits: 77.1 E(32554): 5.9e-14
Smith-Waterman score: 399; 37.8% identity (63.4% similar) in 238 aa overlap (72-297:486-721)

              50        60        70        80        90           
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG--
                                     :.::. ::::::: . ..  ...  ..   
CCDS41 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
         460       470       480       490       500       510     

     100       110       120       130       140       150         
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
       ::. .:. :.:.::::::::::.:  ..  :: .: :: : : .:.. .::: . :  : 
CCDS41 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
         520       530       540       550       560       570     

       160       170       180       190       200       210       
pF1KB6 --VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG
         . .: ::  .: . ..:.  ...:   .:::        ..:::. ::.:.: :  .:
CCDS41 ELLRALLQS-GAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGG
         580        590       600       610       620       630    

       220       230        240       250         260        270   
pF1KB6 RTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLT--WGRPS-TRIQQQLG-QL
       :::::::.....  ::. :. :  :.::  :. : .: .:.   : :. ::.  . : ..
CCDS41 RTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADI
          640       650       660       670       680       690    

               280       290       300       310                   
pF1KB6 TLEN---LQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL            
         ::   :  ::     .: :..::  :                                
CCDS41 HAENEEPLCPLPSPPTSDS-DSDSEGPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNT
          700       710        720       730       740       750   

>>CCDS12642.2 BCL3 gene_id:602|Hs108|chr19                (454 aa)
 initn: 363 init1: 211 opt: 363  Z-score: 338.4  bits: 71.3 E(32554): 1.6e-12
Smith-Waterman score: 363; 35.9% identity (62.1% similar) in 206 aa overlap (56-260:116-319)

          30        40        50        60         70        80    
pF1KB6 LDDRHDSGLDSMKDEEYEQMVKELQEIRLEPQEVPRGSE-PWKQQLTEDGDSFLHLAIIH
                                     :.: : ...     .  ::::. ::.:...
CCDS12 GALLPLYPTRAMGSPFPLVNLPTPLYPMMCPMEHPLSADIAMATRADEDGDTPLHIAVVQ
          90       100       110       120       130       140     

           90       100       110       120       130       140    
pF1KB6 EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG
        .   . ...   .     :.. :::.::::::::::. : ... :. :: .:   : .:
CCDS12 GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG
         150       160       170       180       190       200     

          150       160       170       180       190       200    
pF1KB6 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS
       .:  :::::.   . . .: .: .   :   :.: ::.: : ::.:        :.::. 
CCDS12 QTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARNYDGLTALHVAVNTECQETVQLLLE
         210       220       230         240       250       260   

          210       220       230       240       250       260    
pF1KB6 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR
        :::..: .  .::. :  ::. .. ..:.:::. ::.::   :.: :  . . ::    
CCDS12 RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP
           270       280       290       300       310       320   

          270       280       290       300       310              
pF1KB6 IQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL       
                                                                   
CCDS12 LVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPASTSQPDPSPDRSANTSP
           330       340       350       360       370       380   




317 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:31:52 2016 done: Fri Nov  4 17:31:52 2016
 Total Scan time:  2.770 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com