Result of FASTA (omim) for pF1KB6349
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6349, 266 aa
  1>>>pF1KB6349 266 - 266 aa - 266 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2005+/-0.000358; mu= 15.7823+/- 0.022
 mean_var=85.6952+/-18.307, 0's: 0 Z-trim(113.9): 117  B-trim: 0 in 0/55
 Lambda= 0.138547
 statistics sampled from 23328 (23452) to 23328 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.275), width:  16
 Scan time:  6.070

The best scores are:                                      opt bits E(85289)
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 1810 371.6 8.1e-103
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 1664 342.4 4.9e-94
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 1637 337.1 2.1e-92
NP_002116 (OMIM: 604776) major histocompatibility  ( 266) 1599 329.5   4e-90
NP_072049 (OMIM: 612735) major histocompatibility  ( 266) 1596 328.9 6.1e-90
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 1584 326.5 3.3e-89
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 1127 235.1   1e-61
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 1124 234.5 1.5e-61
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 1106 230.9 1.8e-60
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 1103 230.3 2.9e-60
NP_002114 (OMIM: 123400,126200,212750,604305) HLA  ( 261) 1102 230.1 3.2e-60
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 1085 226.7 3.3e-59
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 1082 226.1   5e-59
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273)  988 207.3 2.4e-53
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227)  902 190.1 3.1e-48
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219)  896 188.9   7e-48
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260)  276 65.0 1.6e-10
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263)  275 64.8 1.8e-10
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325)  276 65.1 1.9e-10
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348)  276 65.1   2e-10
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348)  276 65.1   2e-10
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337)  274 64.7 2.5e-10
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254)  256 61.0 2.5e-09
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298)  252 60.3 4.9e-09
NP_001522 (OMIM: 600764) major histocompatibility  ( 341)  250 59.9 7.1e-09
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260)  240 57.8 2.3e-08
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260)  240 57.8 2.3e-08
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260)  240 57.8 2.3e-08
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250)  233 56.4   6e-08
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246)  230 55.8   9e-08
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256)  230 55.8 9.2e-08
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242)  229 55.6   1e-07
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168)  227 55.0   1e-07
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334)  230 55.9 1.1e-07
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255)  227 55.2 1.4e-07
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA  ( 246)  226 55.0 1.6e-07
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA  ( 246)  226 55.0 1.6e-07
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362)  223 54.5 3.1e-07
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365)  223 54.5 3.1e-07
NP_001181928 (OMIM: 600764) major histocompatibili ( 296)  221 54.1 3.6e-07
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255)  216 53.0 6.4e-07
XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA  ( 206)  214 52.5 7.2e-07
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254)  209 51.6 1.7e-06
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228)  208 51.4 1.8e-06
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343)  209 51.7 2.1e-06
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324)  208 51.5 2.3e-06
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346)  208 51.5 2.4e-06
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388)  208 51.6 2.6e-06
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420)  208 51.6 2.8e-06
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431)  208 51.6 2.8e-06


>>NP_002115 (OMIM: 126200,142857,180300,181000) major hi  (266 aa)
 initn: 1810 init1: 1810 opt: 1810  Z-score: 1966.9  bits: 371.6 E(85289): 8.1e-103
Smith-Waterman score: 1810; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
              190       200       210       220       230       240

              250       260      
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
       ::::::::::::::::::::::::::
NP_002 FLGAGLFIYFRNQKGHSGLQPTGFLS
              250       260      

>>NP_001230894 (OMIM: 126200,142857,180300,181000) major  (266 aa)
 initn: 1664 init1: 1664 opt: 1664  Z-score: 1809.2  bits: 342.4 E(85289): 4.9e-94
Smith-Waterman score: 1664; 91.4% identity (96.6% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
       ::::.:::::::..::::::::::::::.::::::::     ::::::::::::.:::::
NP_001 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
       .::::.:::::::::::::::::::::::::::::.::: :. ::.::::::::::::::
NP_001 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
       ::::.:::::::::::::::::::::::::::::::::::: ::::::.:.::::::.::
NP_001 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
              190       200       210       220       230       240

              250       260      
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
       ::::::::::::::::::::: ::::
NP_001 FLGAGLFIYFRNQKGHSGLQPRGFLS
              250       260      

>>XP_011546040 (OMIM: 126200,142857,180300,181000) PREDI  (266 aa)
 initn: 1637 init1: 1637 opt: 1637  Z-score: 1780.0  bits: 337.1 E(85289): 2.1e-92
Smith-Waterman score: 1637; 90.6% identity (95.5% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
       ::::::::::::.:::::::::::::::.:::.:::::: : .::::::::::.::.: :
XP_011 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
       ::::: :::::::::.::::::::: :: :::::::::. :. ::: ::::::: :::::
XP_011 YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
       ::::.:.:::::.:::::::::::::::::::::::::::: ::::::::.:::::::::
XP_011 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_011 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL
              190       200       210       220       230       240

              250       260      
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
       ::::::::::::::::::::::::::
XP_011 FLGAGLFIYFRNQKGHSGLQPTGFLS
              250       260      

>>NP_002116 (OMIM: 604776) major histocompatibility comp  (266 aa)
 initn: 1619 init1: 1599 opt: 1599  Z-score: 1739.0  bits: 329.5 E(85289): 4e-90
Smith-Waterman score: 1599; 88.7% identity (95.9% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
       :::::::::: :. ::::::::::::::.:::::::: : : :::::::::::::: : .
NP_002 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
       :::::..::::::::.:::::::::::::::::::.::. :::::::::::::: :::::
NP_002 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
       ::::.:::::::..:: :::::::::::.:::::::::::: :.::::::.:::::::::
NP_002 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_002 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
              190       200       210       220       230       240

              250       260      
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
       ::::::::::.::::::::.:::..:
NP_002 FLGAGLFIYFKNQKGHSGLHPTGLVS
              250       260      

>>NP_072049 (OMIM: 612735) major histocompatibility comp  (266 aa)
 initn: 1596 init1: 1596 opt: 1596  Z-score: 1735.7  bits: 328.9 E(85289): 6.1e-90
Smith-Waterman score: 1596; 89.1% identity (94.7% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
       :::::::::: ..::::::::::: ::..::::::::   : ::::::::::::.:::::
NP_072 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
       .:::: .::::::::.::::::::: :: ::::::.::: :. ::.:::::::: :::::
NP_072 HNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
       ::::.:.:::::.:::::::::::::::::::::::::::: ::::::::.:::::::::
NP_072 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
       ::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
NP_072 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLL
              190       200       210       220       230       240

              250       260      
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
       ::::::::::::::::::::::::::
NP_072 FLGAGLFIYFRNQKGHSGLQPTGFLS
              250       260      

>>XP_011512864 (OMIM: 604776) PREDICTED: major histocomp  (276 aa)
 initn: 1584 init1: 1584 opt: 1584  Z-score: 1722.6  bits: 326.5 E(85289): 3.3e-89
Smith-Waterman score: 1584; 89.3% identity (95.8% similar) in 262 aa overlap (1-262:1-262)

               10        20        30        40        50        60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
       :::::::::: :. ::::::::::::::.:::::::: : : :::::::::::::: : .
XP_011 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
       :::::..::::::::.:::::::::::::::::::.::. :::::::::::::: :::::
XP_011 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
       ::::.:::::::..:: :::::::::::.:::::::::::: :.::::::.:::::::::
XP_011 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
XP_011 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
              190       200       210       220       230       240

              250       260                
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS          
       ::::::::::.::::::::.::              
XP_011 FLGAGLFIYFKNQKGHSGLHPTVLSSESLKERKRSC
              250       260       270      

>>NP_001230890 (OMIM: 123400,126200,212750,604305) HLA c  (269 aa)
 initn: 1125 init1: 1098 opt: 1127  Z-score: 1229.0  bits: 235.1 E(85289): 1e-61
Smith-Waterman score: 1127; 64.1% identity (82.4% similar) in 262 aa overlap (4-265:7-268)

                  10        20        30        40        50       
pF1KB6    MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLD
             :..::   ....:. : .::: :: . :.   :..: :  :.: :::::::.. 
NP_001 MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 RYFYNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVES
       ::.::.:: .::::::: .::::  ::::::::::::..:: .:: .:: ::::: :.  
NP_001 RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 FTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLI
         .::::.: ::. ::.:. :.:::::::::. ::::.:.:::: : ::: ::.::: ::
NP_001 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB6 QNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVL
       .::::::: ::::: .:. :.::::.:::::. ::.::::::.:::::::::::::::::
NP_001 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL
              190       200       210       220       230       240

       240       250       260      
pF1KB6 GLLFLGAGLFIYFRNQKGHSGLQPTGFLS
       ::.::: ::.:  :.::: .:  :.:.: 
NP_001 GLIFLGLGLIIRQRSQKGPQGPPPAGLLH
              250       260         

>>NP_001230891 (OMIM: 123400,126200,212750,604305) HLA c  (261 aa)
 initn: 1121 init1: 1121 opt: 1124  Z-score: 1226.0  bits: 234.5 E(85289): 1.5e-61
Smith-Waterman score: 1124; 66.9% identity (83.5% similar) in 254 aa overlap (4-255:7-258)

                  10        20          30        40        50     
pF1KB6    MVCLKLPGGSCMTALTVTLMV--LSSPLALSGDTRPRFLWQPKRECHFFNGTERVRF
             :..:::  . : :::::.  ::.:.: . :.   :..: :  :.: :::::::.
NP_001 MSWKKALRIPGG--LRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRL
               10          20        30        40        50        

          60        70        80        90       100       110     
pF1KB6 LDRYFYNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVV
       ..: .::.:: :::::::::::::: :: : ::::::::::::. :::::  ::::: . 
NP_001 VSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLE
       60        70        80        90       100       110        

         120       130       140       150       160       170     
pF1KB6 ESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTG
          :.::::.: ::. ::.:. :.:::::::::. :::..:.:::: : ::: ::.::: 
NP_001 LRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTP
      120       130       140       150       160       170        

         180       190       200       210       220       230     
pF1KB6 LIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGF
       ::.::::::: ::::: .:. :.::::.:::::. ::.::::::.:::::::::::.:::
NP_001 LIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGF
      180       190       200       210       220       230        

         240       250       260      
pF1KB6 VLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
       ::::.::: ::.:. :.:::           
NP_001 VLGLIFLGLGLIIHHRSQKGLLH        
      240       250       260         

>>NP_001287719 (OMIM: 615161) HLA class II histocompatib  (264 aa)
 initn: 1083 init1: 809 opt: 1106  Z-score: 1206.4  bits: 230.9 E(85289): 1.8e-60
Smith-Waterman score: 1106; 64.1% identity (81.3% similar) in 262 aa overlap (4-265:3-263)

               10        20        30        40        50        60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
          :..:::   .:.:: :..::.:.: . :    :: : :  :.: ::::::: . ::.
NP_001  MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYI
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
       ::.::  :::::::::.::::::: . : ::. ::.::: :::::  ::::: .    :.
NP_001 YNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELRTTL
      60        70        80         90       100       110        

              130       140       150       160       170       180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
       ::.:.: ::. ::.:. :.:::::::::. :::..:.:::: : ::: ::.:::.::.::
NP_001 QRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLIRNG
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
       ::::: ::::: .:. :..:::::::::. ::.::::::.:::::::::::.:::::::.
NP_001 DWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLI
      180       190       200       210       220       230        

              250       260      
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
       ::: ::.:  :.:::  :  :.:.: 
NP_001 FLGLGLIIRHRGQKGPRGPPPAGLLH
      240       250       260    

>>XP_005249108 (OMIM: 615161) PREDICTED: HLA class II hi  (275 aa)
 initn: 1083 init1: 809 opt: 1103  Z-score: 1203.0  bits: 230.3 E(85289): 2.9e-60
Smith-Waterman score: 1103; 63.9% identity (81.0% similar) in 263 aa overlap (4-266:3-264)

               10        20        30        40        50        60
pF1KB6 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
          :..:::   .:.:: :..::.:.: . :    :: : :  :.: ::::::: . ::.
XP_005  MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYI
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
       ::.::  :::::::::.::::::: . : ::. ::.::: :::::  ::::: .    :.
XP_005 YNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELRTTL
      60        70        80         90       100       110        

              130       140       150       160       170       180
pF1KB6 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
       ::.:.: ::. ::.:. :.:::::::::. :::..:.:::: : ::: ::.:::.::.::
XP_005 QRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLIRNG
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
       ::::: ::::: .:. :..:::::::::. ::.::::::.:::::::::::.:::::::.
XP_005 DWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLI
      180       190       200       210       220       230        

              250       260                 
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS           
       ::: ::.:  :.:::  :  :.: .:           
XP_005 FLGLGLIIRHRGQKGPRGPPPAGNISAMIQSGERAQA
      240       250       260       270     




266 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:47:20 2016 done: Fri Nov  4 18:47:21 2016
 Total Scan time:  6.070 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com