Result of FASTA (ccds) for pF1KB8146
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8146, 373 aa
  1>>>pF1KB8146 373 - 373 aa - 373 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6112+/-0.000829; mu= 15.2875+/- 0.050
 mean_var=71.7126+/-14.411, 0's: 0 Z-trim(107.8): 31  B-trim: 549 in 1/48
 Lambda= 0.151453
 statistics sampled from 9762 (9790) to 9762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.301), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS30659.1 MECR gene_id:51102|Hs108|chr1          ( 373) 2472 549.2 2.2e-156
CCDS30660.1 MECR gene_id:51102|Hs108|chr1          ( 297) 1948 434.6 5.2e-122
CCDS11451.1 VAT1 gene_id:10493|Hs108|chr17         ( 393)  331 81.4 1.5e-15
CCDS665.1 CRYZ gene_id:1429|Hs108|chr1             ( 329)  274 68.9 7.3e-12
CCDS32492.1 VAT1L gene_id:57687|Hs108|chr16        ( 419)  269 67.9 1.9e-11
CCDS44162.1 CRYZ gene_id:1429|Hs108|chr1           ( 295)  264 66.7   3e-11


>>CCDS30659.1 MECR gene_id:51102|Hs108|chr1               (373 aa)
 initn: 2472 init1: 2472 opt: 2472  Z-score: 2921.2  bits: 549.2 E(32554): 2.2e-156
Smith-Waterman score: 2472; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB8 MWVCSTLWRVRTPARQWRGLLPASGCHGPAASSYSASAEPARVRALVYGHHGDPAKVVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MWVCSTLWRVRTPARQWRGLLPASGCHGPAASSYSASAEPARVRALVYGHHGDPAKVVEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVT
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS30 KNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGFLPELPAVGGNEGVAQVVAVGSNVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 IFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEAS
              310       320       330       340       350       360

              370   
pF1KB8 MKPFISSKQILTM
       :::::::::::::
CCDS30 MKPFISSKQILTM
              370   

>>CCDS30660.1 MECR gene_id:51102|Hs108|chr1               (297 aa)
 initn: 1948 init1: 1948 opt: 1948  Z-score: 2303.9  bits: 434.6 E(32554): 5.2e-122
Smith-Waterman score: 1948; 99.7% identity (100.0% similar) in 297 aa overlap (77-373:1-297)

         50        60        70        80        90       100      
pF1KB8 VYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGN
                                     :::::::::::::::::::.::::::::::
CCDS30                               MLAAPINPSDINMIQGNYGFLPELPAVGGN
                                             10        20        30

        110       120       130       140       150       160      
pF1KB8 EGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGV
               40        50        60        70        80        90

        170       180       190       200       210       220      
pF1KB8 NPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSD
              100       110       120       130       140       150

        230       240       250       260       270       280      
pF1KB8 RLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYG
              160       170       180       190       200       210

        290       300       310       320       330       340      
pF1KB8 GMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACS
              220       230       240       250       260       270

        350       360       370   
pF1KB8 QVPLQDYQSALEASMKPFISSKQILTM
       :::::::::::::::::::::::::::
CCDS30 QVPLQDYQSALEASMKPFISSKQILTM
              280       290       

>>CCDS11451.1 VAT1 gene_id:10493|Hs108|chr17              (393 aa)
 initn: 287 init1: 130 opt: 331  Z-score: 392.6  bits: 81.4 E(32554): 1.5e-15
Smith-Waterman score: 331; 32.2% identity (58.2% similar) in 273 aa overlap (23-286:26-286)

                  10        20        30          40        50     
pF1KB8    MWVCSTLWRVRTPARQWRGLLPASGCHGPAAS--SYSASAEPARVRALVYGHHGDPA
                                ::  . ::::  . .:.: :  .: ::    :   
CCDS11 MSDEREVAEAATGEDASSPPPKTEAASDPQHPAASEGAAAAAASPPLLRCLVLTGFGGYD
               10        20        30        40        50        60

          60          70        80        90       100       110   
pF1KB8 KVVELKNLELA--AVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVV
       :: .:..   :  :   ... ... :  .: .:.   :: :  :: ::.. : ::.. :.
CCDS11 KV-KLQSRPAAPPAPGPGQLTLRLRACGLNFADLMARQGLYDRLPPLPVTPGMEGAGVVI
                70        80        90       100       110         

           120       130       140       150       160       170   
pF1KB8 AVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYR
       ::: .:.  : :: :.  : . : :. :..      . .:  . .. ::.: ::  ::: 
CCDS11 AVGEGVSDRKAGDRVMVLNRS-GMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYM
     120       130       140        150       160       170        

           180       190       200       210         220       230 
pF1KB8 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTI-NV-VRDRPDIQKLSDRLKSL
       .:.:: .:::: ::. . . .:::.:..:.      ::. :: :    . .:  . ::  
CCDS11 VLFDFGNLQPGHSVLVHMAAGGVGMAAVQLC-----RTVENVTVFGTASASK-HEALKEN
      180       190       200            210       220        230  

             240       250          260       270       280        
pF1KB8 GAEHVITEEELRRPEMKNFFKDMPQPR---LALNCVGGKSSTELLRQLARGGTMVTYGGM
       :. : :   . .  .. . .: . .:.   .... .::.....    :   : .::::  
CCDS11 GVTHPI---DYHTTDYVDEIKKI-SPKGVDIVMDPLGGSDTAKGYNLLKPMGKVVTYGMA
               240       250        260       270       280        

      290       300       310       320       330       340        
pF1KB8 AKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQV
                                                                   
CCDS11 NLLTGPKRNLMALARTWWNQFSVTALQLLQANRAVCGFHLGYLDGEVELVSGVVARLLAL
      290       300       310       320       330       340        

>>CCDS665.1 CRYZ gene_id:1429|Hs108|chr1                  (329 aa)
 initn: 274 init1: 231 opt: 274  Z-score: 326.5  bits: 68.9 E(32554): 7.3e-12
Smith-Waterman score: 284; 23.3% identity (59.0% similar) in 317 aa overlap (43-358:8-313)

             20        30        40        50        60         70 
pF1KB8 PARQWRGLLPASGCHGPAASSYSASAEPARVRALVYGHHGDPAKVVELK-NLELAAVRGS
                                     .::.   . : : .:..:. .. .   .  
CCDS66                        MATGQKLMRAVRVFEFGGP-EVLKLRSDIAVPIPKDH
                                      10         20        30      

              80        90       100       110       120       130 
pF1KB8 DVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPA
       .: .:. :  .:: .  . .:.:.  : :: . :.. .. . :::.:....: :: :. .
CCDS66 QVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTS
         40        50        60        70        80        90      

             140       150       160       170       180       190 
pF1KB8 NAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNA
       ..  : .   :. ..... ..:  . ....:..:.   :::: :.    .. :.::. ..
CCDS66 STISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHG
        100       110       120       130       140       150      

             200       210       220       230       240       250 
pF1KB8 SNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFF
       ...::: :. ::: : ::. ....    . ::.   :.. ::..:....:.   .  . .
CCDS66 ASGGVGLAACQIARAYGLKILGTA-GTEEGQKIV--LQN-GAHEVFNHREVNYIDKIKKY
        160       170       180          190        200       210  

             260       270       280       290       300       310 
pF1KB8 KDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFW
              . .. ... . .. :  :..:: ... :  ..  .  .    . :. .. :  
CCDS66 VGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVG--SRGTIEINPRDTMAKESSIIGVT
            220       230       240         250       260       270

             320       330       340       350       360       370 
pF1KB8 LSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSKQIL
       : .  :.    .:..   .:   .. : :     :: ::.    : :             
CCDS66 LFSSTKE----EFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATGKMI
                  280       290       300       310       320      

          
pF1KB8 TM 
          
CCDS66 LLL
          

>>CCDS32492.1 VAT1L gene_id:57687|Hs108|chr16             (419 aa)
 initn: 131 init1: 107 opt: 269  Z-score: 319.0  bits: 67.9 E(32554): 1.9e-11
Smith-Waterman score: 269; 25.7% identity (56.7% similar) in 268 aa overlap (19-286:21-276)

                 10        20        30        40        50        
pF1KB8   MWVCSTLWRVRTPARQWRGLLPASGCHGPAASSYSASAEPARVRALVYGHHGDPAKVV
                           :  :: :  : ..   . . :   .::.: .  :   :. 
CCDS32 MAKEGVEKAEETEQMIEKEAGKEPAEGGGGDGSHRLGDAQE---MRAVVLAGFGGLNKLR
               10        20        30        40           50       

       60        70        80        90       100       110        
pF1KB8 ELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSN
        ...  .   . ....... :  .:  :. . :::    :. : : : :  . : :.:..
CCDS32 LFRK-AMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDS
        60         70        80        90       100       110      

      120       130       140       150       160       170        
pF1KB8 VTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDF
       : : . :: :. : .. ..:   .    : . ..:.:. .. ::.. .:  ::: ::.. 
CCDS32 VKGYEIGDRVM-AFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEV
        120        130       140       150       160       170     

      180       190       200       210       220       230        
pF1KB8 EQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVIT
        .:. : ::. .....:::::: :. ...   :.  . .    . ..: .  :  ...  
CCDS32 ANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNADY
         180       190       200       210       220       230     

      240       250       260       270       280       290        
pF1KB8 EEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVASVS
        .:..:   ..   :.     .:.:. : .. . :  :   ::.. ::            
CCDS32 VQEVKRISAEGV--DI-----VLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSF
         240              250       260       270       280        

      300       310       320       330       340       350        
pF1KB8 LLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALE
                                                                   
CCDS32 FSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIK
      290       300       310       320       330       340        

>>CCDS44162.1 CRYZ gene_id:1429|Hs108|chr1                (295 aa)
 initn: 248 init1: 248 opt: 264  Z-score: 315.4  bits: 66.7 E(32554): 3e-11
Smith-Waterman score: 264; 27.4% identity (66.7% similar) in 201 aa overlap (43-242:8-203)

             20        30        40        50        60         70 
pF1KB8 PARQWRGLLPASGCHGPAASSYSASAEPARVRALVYGHHGDPAKVVELK-NLELAAVRGS
                                     .::.   . : : .:..:. .. .   .  
CCDS44                        MATGQKLMRAVRVFEFGGP-EVLKLRSDIAVPIPKDH
                                      10         20        30      

              80        90       100       110       120       130 
pF1KB8 DVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPA
       .: .:. :  .:: .  . .:.:.  : :: . :.. .. . :::.:....: :: :. .
CCDS44 QVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTS
         40        50        60        70        80        90      

             140       150       160       170       180       190 
pF1KB8 NAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNA
       ..  : .   :. ..... ..:  . ....:..:.   :::: :.    .. :.::. ..
CCDS44 STISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHG
        100       110       120       130       140       150      

             200       210       220       230       240       250 
pF1KB8 SNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFF
       ...::: :. ::: : ::. ....    . ::.   :.. ::..:....:.         
CCDS44 ASGGVGLAACQIARAYGLKILGTA-GTEEGQKIV--LQN-GAHEVFNHREVNYIDKIKVV
        160       170       180          190        200       210  

             260       270       280       290       300       310 
pF1KB8 KDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFW
                                                                   
CCDS44 GSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPLE
            220       230       240       250       260       270  




373 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:59:01 2016 done: Fri Nov  4 19:59:02 2016
 Total Scan time:  2.510 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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