Result of FASTA (ccds) for pF1KB5035
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5035, 192 aa
  1>>>pF1KB5035 192 - 192 aa - 192 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0079+/-0.000744; mu= 5.9034+/- 0.045
 mean_var=114.7843+/-22.616, 0's: 0 Z-trim(112.5): 30  B-trim: 0 in 0/51
 Lambda= 0.119711
 statistics sampled from 13207 (13233) to 13207 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.406), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS7564.2 MXI1 gene_id:4601|Hs108|chr10           ( 228) 1240 224.1 4.9e-59
CCDS7563.1 MXI1 gene_id:4601|Hs108|chr10           ( 295) 1240 224.2 6.1e-59
CCDS31284.1 MXI1 gene_id:4601|Hs108|chr10          ( 182)  979 179.0 1.5e-45
CCDS1896.1 MXD1 gene_id:4084|Hs108|chr2            ( 221)  672 126.0 1.6e-29
CCDS56123.1 MXD1 gene_id:4084|Hs108|chr2           ( 211)  602 113.9 6.8e-26
CCDS3361.1 MXD4 gene_id:10608|Hs108|chr4           ( 209)  529 101.3 4.2e-22
CCDS4416.1 MXD3 gene_id:83463|Hs108|chr5           ( 206)  427 83.7 8.3e-17
CCDS47347.1 MXD3 gene_id:83463|Hs108|chr5          ( 193)  370 73.8 7.2e-14


>>CCDS7564.2 MXI1 gene_id:4601|Hs108|chr10                (228 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 1173.4  bits: 224.1 E(32554): 4.9e-59
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:37-228)

                                             10        20        30
pF1KB5                               MPSPRLQHSKPPRRLSRAQKHSSGSSNTST
                                     ::::::::::::::::::::::::::::::
CCDS75 INVQRLLEAAEFLERRERECEHGYASSFPSMPSPRLQHSKPPRRLSRAQKHSSGSSNTST
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KB5 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KB5 QHQLENLEREQRFLKWRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QHQLENLEREQRFLKWRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEF
        130       140       150       160       170       180      

              160       170       180       190  
pF1KB5 SHGEVDNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS75 SHGEVDNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
        190       200       210       220        

>>CCDS7563.1 MXI1 gene_id:4601|Hs108|chr10                (295 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 1171.7  bits: 224.2 E(32554): 6.1e-59
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:104-295)

                                             10        20        30
pF1KB5                               MPSPRLQHSKPPRRLSRAQKHSSGSSNTST
                                     ::::::::::::::::::::::::::::::
CCDS75 QILLEAASYLEQIEKENKKCEHGYASSFPSMPSPRLQHSKPPRRLSRAQKHSSGSSNTST
            80        90       100       110       120       130   

               40        50        60        70        80        90
pF1KB5 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS
           140       150       160       170       180       190   

              100       110       120       130       140       150
pF1KB5 QHQLENLEREQRFLKWRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QHQLENLEREQRFLKWRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEF
           200       210       220       230       240       250   

              160       170       180       190  
pF1KB5 SHGEVDNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS75 SHGEVDNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
           260       270       280       290     

>>CCDS31284.1 MXI1 gene_id:4601|Hs108|chr10               (182 aa)
 initn: 970 init1: 970 opt: 979  Z-score: 931.2  bits: 179.0 E(32554): 1.5e-45
Smith-Waterman score: 1146; 94.8% identity (94.8% similar) in 192 aa overlap (1-192:1-182)

               10        20        30        40        50        60
pF1KB5 MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHLRLCLERLKVLIPL
       :::::::::::::::::::::::::::::::::          :::::::::::::::::
CCDS31 MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANR----------RAHLRLCLERLKVLIPL
               10        20        30                  40        50

               70        80        90       100       110       120
pF1KB5 GPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKWRLEQLQGPQEMERI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKWRLEQLQGPQEMERI
               60        70        80        90       100       110

              130       140       150       160       170       180
pF1KB5 RMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDIDDHSSLPSIGSDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDIDDHSSLPSIGSDEG
              120       130       140       150       160       170

              190  
pF1KB5 YSSASVKLSFTS
       ::::::::::::
CCDS31 YSSASVKLSFTS
              180  

>>CCDS1896.1 MXD1 gene_id:4084|Hs108|chr2                 (221 aa)
 initn: 646 init1: 377 opt: 672  Z-score: 643.4  bits: 126.0 E(32554): 1.6e-29
Smith-Waterman score: 672; 61.8% identity (87.6% similar) in 170 aa overlap (18-187:43-207)

                            10        20        30        40       
pF1KB5              MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHL
                                     : :. . :.......::::::.::::::::
CCDS18 LEAADYLERREREAEHGYASMLPYNNKDRDALKRRNKSKKNNSSSRSTHNEMEKNRRAHL
             20        30        40        50        60        70  

        50        60        70        80        90       100       
pF1KB5 RLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKWR
       :::::.:: :.::::. .:::::.::.::: ::::::. .::. ::...:.:::: :: .
CCDS18 RLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRQ
             80        90       100       110       120       130  

       110       120       130       140       150       160       
pF1KB5 LEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDID
       ::.:     .:::::::::::.::.::::.::::.::::::..  :..:  :..:.:: :
CCDS18 LEKLG----IERIRMDSIGSTVSSERSDSDREEIDVDVESTDYLTGDLD-WSSSSVSDSD
                140       150       160       170        180       

       170       180       190           
pF1KB5 DHSSLPSIGSDEGYSSASVKLSFTS         
       ...:. :.::::::::.:.:              
CCDS18 ERGSMQSLGSDEGYSSTSIKRIKLQDSHKACLGL
       190       200       210       220 

>>CCDS56123.1 MXD1 gene_id:4084|Hs108|chr2                (211 aa)
 initn: 606 init1: 315 opt: 602  Z-score: 578.4  bits: 113.9 E(32554): 6.8e-26
Smith-Waterman score: 602; 62.2% identity (87.2% similar) in 156 aa overlap (32-187:48-197)

              10        20        30        40        50        60 
pF1KB5 PSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHLRLCLERLKVLIPLG
                                     :.: .:.  ..::::::::::.:: :.:::
CCDS56 YLERREREAEHGYASMLPYNNKDRDALKRRNKSKKNN-SSSRRAHLRLCLEKLKGLVPLG
        20        30        40        50         60        70      

              70        80        90       100       110       120 
pF1KB5 PDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKWRLEQLQGPQEMERIR
       :. .:::::.::.::: ::::::. .::. ::...:.:::: :: .::.: :   .::::
CCDS56 PESSRHTTLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRQLEKL-G---IERIR
         80        90       100       110       120           130  

             130       140       150       160       170       180 
pF1KB5 MDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSISDIDDHSSLPSIGSDEGY
       :::::::.::.::::.::::.::::::..  :..:  :..:.:: :...:. :.::::::
CCDS56 MDSIGSTVSSERSDSDREEIDVDVESTDYLTGDLD-WSSSSVSDSDERGSMQSLGSDEGY
            140       150       160        170       180       190 

             190           
pF1KB5 SSASVKLSFTS         
       ::.:.:              
CCDS56 SSTSIKRIKLQDSHKACLGL
             200       210 

>>CCDS3361.1 MXD4 gene_id:10608|Hs108|chr4                (209 aa)
 initn: 538 init1: 346 opt: 529  Z-score: 510.3  bits: 101.3 E(32554): 4.2e-22
Smith-Waterman score: 529; 52.0% identity (76.6% similar) in 175 aa overlap (15-188:37-203)

                               10        20        30        40    
pF1KB5                 MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRR
                                     ..: . ...:    .  :::.::::::.::
CCDS33 LILLEAAEYLERRDREAEHGYASVLPFDGDFAREKTKAAGLVRKAPNNRSSHNELEKHRR
         10        20        30        40        50        60      

           50        60        70        80        90       100    
pF1KB5 AHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLEREQRFL
       :.::: ::.:: :.::::: ::::::.::..::.::::::: .:..    :.:..:.:::
CCDS33 AKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKVHIKKLEEQDRRALSIKEQLQQEHRFL
         70        80        90       100       110       120      

          110       120       130       140       150       160    
pF1KB5 KWRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVDNISTTSIS
       : :::::.  : .::.: :: ::..:.:  :::.:   ::.:. ::. ::.:.....  :
CCDS33 KRRLEQLS-VQSVERVRTDSTGSAVSTD--DSEQE---VDIEGMEFGPGELDSVGSS--S
        130        140       150            160       170          

          170        180       190    
pF1KB5 DIDDHSSLPS-IGSDEGYSSASVKLSFTS  
       : ::: :: :  :.: :..    .:      
CCDS33 DADDHYSLQSGTGGDSGFGPHCRRLGRPALS
      180       190       200         

>>CCDS4416.1 MXD3 gene_id:83463|Hs108|chr5                (206 aa)
 initn: 381 init1: 297 opt: 427  Z-score: 415.2  bits: 83.7 E(32554): 8.3e-17
Smith-Waterman score: 427; 47.7% identity (76.2% similar) in 151 aa overlap (10-156:36-185)

                                    10        20        30         
pF1KB5                      MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNEL
                                     . :  . : .:.   . ... ..::.::::
CCDS44 SNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRSVHNEL
          10        20        30        40        50        60     

      40        50        60        70        80        90         
pF1KB5 EKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLER
       :: :::.:. ::::::  .::: ::.:.:::.:: .:. ::.:::. :.....  : :. 
CCDS44 EKRRRAQLKRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLKERLRS
          70        80        90       100       110       120     

     100       110          120        130       140       150     
pF1KB5 EQRFLKWRLEQLQG---PQEMERIRMDSIGST-ISSDRSDSEREEIEVDVESTEFSHGEV
       .:. :. .::::.:     : ::.: ::. :. .::.::::..::.::::::  :. ::.
CCDS44 KQQSLQRQLEQLRGLAGAAERERLRADSLDSSGLSSERSDSDQEELEVDVESLVFG-GEA
         130       140       150       160       170       180     

         160       170       180       190  
pF1KB5 DNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
       .                                    
CCDS44 ELLRGFVAGQEHSYSHGGGAWL               
          190       200                     

>>CCDS47347.1 MXD3 gene_id:83463|Hs108|chr5               (193 aa)
 initn: 356 init1: 297 opt: 370  Z-score: 362.4  bits: 73.8 E(32554): 7.2e-14
Smith-Waterman score: 370; 45.9% identity (75.2% similar) in 133 aa overlap (10-138:36-168)

                                    10        20        30         
pF1KB5                      MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNEL
                                     . :  . : .:.   . ... ..::.::::
CCDS47 SNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRSVHNEL
          10        20        30        40        50        60     

      40        50        60        70        80        90         
pF1KB5 EKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLENLER
       :: :::.:. ::::::  .::: ::.:.:::.:: .:. ::.:::. :.....  : :. 
CCDS47 EKRRRAQLKRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLKERLRS
          70        80        90       100       110       120     

     100       110          120        130       140       150     
pF1KB5 EQRFLKWRLEQLQG---PQEMERIRMDSIGST-ISSDRSDSEREEIEVDVESTEFSHGEV
       .:. :. .::::.:     : ::.: ::. :. .::.::::..                 
CCDS47 KQQSLQRQLEQLRGLAGAAERERLRADSLDSSGLSSERSDSDQVLPNENGGTPNHRPTGR
         130       140       150       160       170       180     

         160       170       180       190  
pF1KB5 DNISTTSISDIDDHSSLPSIGSDEGYSSASVKLSFTS
                                            
CCDS47 GNNISSHH                             
         190                                




192 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:27:03 2016 done: Fri Nov  4 20:27:03 2016
 Total Scan time:  2.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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