Result of FASTA (ccds) for pF1KB4172
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4172, 359 aa
  1>>>pF1KB4172 359 - 359 aa - 359 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9747+/-0.00108; mu= 14.0627+/- 0.065
 mean_var=139.6773+/-29.993, 0's: 0 Z-trim(106.3): 175  B-trim: 357 in 1/52
 Lambda= 0.108520
 statistics sampled from 8673 (8897) to 8673 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.273), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS6515.1 ELAVL2 gene_id:1993|Hs108|chr9          ( 359) 2363 381.9 4.5e-106
CCDS44138.1 ELAVL4 gene_id:1996|Hs108|chr1         ( 366) 2157 349.7 2.3e-96
CCDS44140.1 ELAVL4 gene_id:1996|Hs108|chr1         ( 366) 2157 349.7 2.3e-96
CCDS53315.1 ELAVL4 gene_id:1996|Hs108|chr1         ( 369) 2157 349.7 2.3e-96
CCDS72788.1 ELAVL4 gene_id:1996|Hs108|chr1         ( 371) 2157 349.7 2.3e-96
CCDS44139.2 ELAVL4 gene_id:1996|Hs108|chr1         ( 402) 2157 349.7 2.5e-96
CCDS45978.1 ELAVL3 gene_id:1995|Hs108|chr19        ( 360) 1924 313.2 2.2e-85
CCDS32912.1 ELAVL3 gene_id:1995|Hs108|chr19        ( 367) 1900 309.5   3e-84
CCDS55298.1 ELAVL2 gene_id:1993|Hs108|chr9         ( 346) 1545 253.8 1.6e-67
CCDS553.1 ELAVL4 gene_id:1996|Hs108|chr1           ( 380) 1470 242.1 5.7e-64
CCDS81321.1 ELAVL4 gene_id:1996|Hs108|chr1         ( 385) 1470 242.2 5.7e-64
CCDS12193.1 ELAVL1 gene_id:1994|Hs108|chr19        ( 326) 1023 172.1   6e-43
CCDS2213.1 RBMS1 gene_id:5937|Hs108|chr2           ( 406)  417 77.3 2.5e-14
CCDS8923.1 RBMS2 gene_id:5939|Hs108|chr12          ( 407)  392 73.4 3.8e-13


>>CCDS6515.1 ELAVL2 gene_id:1993|Hs108|chr9               (359 aa)
 initn: 2363 init1: 2363 opt: 2363  Z-score: 2017.9  bits: 381.9 E(32554): 4.5e-106
Smith-Waterman score: 2363; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 NLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 NLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KB4 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
              310       320       330       340       350         

>>CCDS44138.1 ELAVL4 gene_id:1996|Hs108|chr1              (366 aa)
 initn: 2504 init1: 2090 opt: 2157  Z-score: 1843.5  bits: 349.7 E(32554): 2.3e-96
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (1-359:8-366)

                      10        20        30         40        50  
pF1KB4        METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQ
              :: :.::::: .::.:::.. : :: ::...: .:.:::::::::::::::::
CCDS44 MEQIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQ
               10         20        30        40        50         

             60        70        80        90       100       110  
pF1KB4 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
       ::..::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
      60        70        80        90       100       110         

            120       130       140       150       160       170  
pF1KB4 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS44 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
     120       130       140       150       160       170         

            180       190       200       210       220       230  
pF1KB4 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
       ::::::::::::::::::: :::::::::::::::::..::.:::::::::::::::: .
CCDS44 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH
     180       190       200       210       220       230         

            240       250       260       270       280       290  
pF1KB4 QAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESIL
       ::::::::::::::::::::::.::::::::.:.::::: :::::::::::.::.:::.:
CCDS44 QAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVL
     240       250       260       270       280       290         

            300       310       320       330       340       350  
pF1KB4 WQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK
       ::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK
     300       310       320       330       340       350         

              
pF1KB4 TNKTHKA
       :::.::.
CCDS44 TNKAHKS
     360      

>>CCDS44140.1 ELAVL4 gene_id:1996|Hs108|chr1              (366 aa)
 initn: 2504 init1: 2090 opt: 2157  Z-score: 1843.5  bits: 349.7 E(32554): 2.3e-96
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (1-359:8-366)

                      10        20        30         40        50  
pF1KB4        METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQ
              :: :.::::: .::.:::.. : :: ::...: .:.:::::::::::::::::
CCDS44 MVMIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQ
               10         20        30        40        50         

             60        70        80        90       100       110  
pF1KB4 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
       ::..::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
      60        70        80        90       100       110         

            120       130       140       150       160       170  
pF1KB4 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS44 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
     120       130       140       150       160       170         

            180       190       200       210       220       230  
pF1KB4 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
       ::::::::::::::::::: :::::::::::::::::..::.:::::::::::::::: .
CCDS44 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH
     180       190       200       210       220       230         

            240       250       260       270       280       290  
pF1KB4 QAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESIL
       ::::::::::::::::::::::.::::::::.:.::::: :::::::::::.::.:::.:
CCDS44 QAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVL
     240       250       260       270       280       290         

            300       310       320       330       340       350  
pF1KB4 WQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK
       ::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK
     300       310       320       330       340       350         

              
pF1KB4 TNKTHKA
       :::.::.
CCDS44 TNKAHKS
     360      

>>CCDS53315.1 ELAVL4 gene_id:1996|Hs108|chr1              (369 aa)
 initn: 2504 init1: 2090 opt: 2157  Z-score: 1843.4  bits: 349.7 E(32554): 2.3e-96
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (1-359:11-369)

                         10        20        30         40         
pF1KB4           METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQN
                 :: :.::::: .::.:::.. : :: ::...: .:.::::::::::::::
CCDS53 MRLKNQIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQN
               10        20         30        40        50         

      50        60        70        80        90       100         
pF1KB4 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT
       :::::..:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT
      60        70        80        90       100       110         

     110       120       130       140       150       160         
pF1KB4 IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS53 IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG
     120       130       140       150       160       170         

     170       180       190       200       210       220         
pF1KB4 FIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP
       :::::::::::::::::::::: :::::::::::::::::..::.:::::::::::::::
CCDS53 FIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGP
     180       190       200       210       220       230         

     230       240       250       260       270       280         
pF1KB4 LAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADE
       : .::::::::::::::::::::::.::::::::.:.::::: :::::::::::.::.::
CCDS53 LHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDE
     240       250       260       270       280       290         

     290       300       310       320       330       340         
pF1KB4 SILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV
       :.:::.:::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV
     300       310       320       330       340       350         

     350         
pF1KB4 SFKTNKTHKA
       ::::::.::.
CCDS53 SFKTNKAHKS
     360         

>>CCDS72788.1 ELAVL4 gene_id:1996|Hs108|chr1              (371 aa)
 initn: 2504 init1: 2090 opt: 2157  Z-score: 1843.4  bits: 349.7 E(32554): 2.3e-96
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (1-359:13-371)

                           10        20        30         40       
pF1KB4             METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLP
                   :: :.::::: .::.:::.. : :: ::...: .:.::::::::::::
CCDS72 MEWNGLKMIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLP
               10        20         30        40        50         

        50        60        70        80        90       100       
pF1KB4 QNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
       :::::::..:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
      60        70        80        90       100       110         

       110       120       130       140       150       160       
pF1KB4 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS72 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG
     120       130       140       150       160       170         

       170       180       190       200       210       220       
pF1KB4 VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYP
       :::::::::::::::::::::::: :::::::::::::::::..::.:::::::::::::
CCDS72 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP
     180       190       200       210       220       230         

       230       240       250       260       270       280       
pF1KB4 GPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDA
       ::: .::::::::::::::::::::::.::::::::.:.::::: :::::::::::.::.
CCDS72 GPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDS
     240       250       260       270       280       290         

       290       300       310       320       330       340       
pF1KB4 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL
       :::.:::.:::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL
     300       310       320       330       340       350         

       350         
pF1KB4 QVSFKTNKTHKA
       ::::::::.::.
CCDS72 QVSFKTNKAHKS
     360       370 

>>CCDS44139.2 ELAVL4 gene_id:1996|Hs108|chr1              (402 aa)
 initn: 2504 init1: 2090 opt: 2157  Z-score: 1843.0  bits: 349.7 E(32554): 2.5e-96
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (1-359:44-402)

                                             10        20        30
pF1KB4                               METQLSNGPTCNNTANGPTTINNNCSSPVD
                                     :: :.::::: .::.:::.. : :: ::..
CCDS44 GKGLTDMRLLLLREIVINESRNCSFMIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQ
            20        30        40        50         60        70  

                40        50        60        70        80         
pF1KB4 SG-NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID
       .: .:.:::::::::::::::::::..:::::::::::::::::::::::::::::::::
CCDS44 TGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID
             80        90       100       110       120       130  

      90       100       110       120       130       140         
pF1KB4 PKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYG
            140       150       160       170       180       190  

     150       160       170       180       190       200         
pF1KB4 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK
       ::::::::::::::.::::::::::::::::::::::::::: :::::::::::::::::
CCDS44 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK
            200       210       220       230       240       250  

     210       220       230       240       250       260         
pF1KB4 TNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIP
       ..::.:::::::::::::::: .::::::::::::::::::::::.::::::::.:.:::
CCDS44 SSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIP
            260       270       280       290       300       310  

     270       280       290       300       310       320         
pF1KB4 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE
       :: :::::::::::.::.:::.:::.:::::::.::::::::::::::::::::::::::
CCDS44 GHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE
            320       330       340       350       360       370  

     330       340       350         
pF1KB4 AAMAIASLNGYRLGDRVLQVSFKTNKTHKA
       ::::::::::::::::::::::::::.::.
CCDS44 AAMAIASLNGYRLGDRVLQVSFKTNKAHKS
            380       390       400  

>>CCDS45978.1 ELAVL3 gene_id:1995|Hs108|chr19             (360 aa)
 initn: 2084 init1: 1344 opt: 1924  Z-score: 1646.4  bits: 313.2 E(32554): 2.2e-85
Smith-Waterman score: 1924; 81.7% identity (92.2% similar) in 360 aa overlap (1-359:9-360)

                       10        20        30        40        50  
pF1KB4         METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQ
               ::.:...::.     :::   .:        : :.:::::::::::::::::
CCDS45 MVTQILGAMESQVGGGPAGPALPNGPLLGTN--------GATDDSKTNLIVNYLPQNMTQ
               10        20        30                40        50  

             60        70        80        90       100       110  
pF1KB4 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
       .:.::::::::.::::::::::::::::::::::: ::.::.:::::::::.::::::::
CCDS45 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV
             60        70        80        90       100       110  

            120       130       140       150       160       170  
pF1KB4 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
       ::::::::::::::::::::::::.:::.::::::::::::::::::::::.::::::::
CCDS45 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
            120       130       140       150       160       170  

            180       190       200       210       220       230  
pF1KB4 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
       ::::::::::::::::::: ::.:::::::::::::::.::.:..::::  ::: ::: .
CCDS45 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHH
            180       190       200       210       220       230  

            240       250       260       270        280       290 
pF1KB4 QAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHP-GTGWCIFVYNLAPDADESI
       :.::::::::::::::::::::..::::..:::... :   :.:::::::::.:.::::.
CCDS45 QTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESV
            240       250       260       270       280       290  

             300       310       320       330       340       350 
pF1KB4 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF
       :::.::::::::::::::::.:::::::::::::::::::::::::::::::.:::::::
CCDS45 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF
            300       310       320       330       340       350  

               
pF1KB4 KTNKTHKA
       ::.: :::
CCDS45 KTSKQHKA
            360

>>CCDS32912.1 ELAVL3 gene_id:1995|Hs108|chr19             (367 aa)
 initn: 1928 init1: 1266 opt: 1900  Z-score: 1626.0  bits: 309.5 E(32554): 3e-84
Smith-Waterman score: 1900; 80.1% identity (90.5% similar) in 367 aa overlap (1-359:9-367)

                       10        20        30        40        50  
pF1KB4         METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQ
               ::.:...::.     :::   .:        : :.:::::::::::::::::
CCDS32 MVTQILGAMESQVGGGPAGPALPNGPLLGTN--------GATDDSKTNLIVNYLPQNMTQ
               10        20        30                40        50  

             60        70        80        90       100       110  
pF1KB4 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
       .:.::::::::.::::::::::::::::::::::: ::.::.:::::::::.::::::::
CCDS32 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV
             60        70        80        90       100       110  

            120       130       140       150       160       170  
pF1KB4 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
       ::::::::::::::::::::::::.:::.::::::::::::::::::::::.::::::::
CCDS32 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
            120       130       140       150       160       170  

            180       190       200       210       220       230  
pF1KB4 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
       ::::::::::::::::::: ::.:::::::::::::::.::.:..::::  ::: ::: .
CCDS32 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHH
            180       190       200       210       220       230  

            240       250              260       270        280    
pF1KB4 QAQRFRLDNLLNMAYGVK-------RFSPMTIDGMTSLAGINIPGHP-GTGWCIFVYNLA
       :.::::::::::::::::       ::::..::::..:::... :   :.:::::::::.
CCDS32 QTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLS
            240       250       260       270       280       290  

          290       300       310       320       330       340    
pF1KB4 PDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD
       :.::::.:::.::::::::::::::::.:::::::::::::::::::::::::::::::.
CCDS32 PEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGE
            300       310       320       330       340       350  

          350         
pF1KB4 RVLQVSFKTNKTHKA
       :::::::::.: :::
CCDS32 RVLQVSFKTSKQHKA
            360       

>>CCDS55298.1 ELAVL2 gene_id:1993|Hs108|chr9              (346 aa)
 initn: 1705 init1: 1543 opt: 1545  Z-score: 1325.9  bits: 253.8 E(32554): 1.6e-67
Smith-Waterman score: 2244; 96.4% identity (96.4% similar) in 359 aa overlap (1-359:1-346)

               10        20        30        40        50        60
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS55 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFR--
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KB4 NLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 -----------FSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG
                 240       250       260       270       280       

              310       320       330       340       350         
pF1KB4 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
       290       300       310       320       330       340      

>>CCDS553.1 ELAVL4 gene_id:1996|Hs108|chr1                (380 aa)
 initn: 2366 init1: 1403 opt: 1470  Z-score: 1262.0  bits: 242.1 E(32554): 5.7e-64
Smith-Waterman score: 2119; 86.6% identity (93.9% similar) in 374 aa overlap (1-359:8-380)

                      10        20        30         40        50  
pF1KB4        METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQ
              :: :.::::: .::.:::.. : :: ::...: .:.:::::::::::::::::
CCDS55 MVMIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQ
               10         20        30        40        50         

             60        70        80        90       100       110  
pF1KB4 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
       ::..::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
      60        70        80        90       100       110         

            120       130       140       150       160       170  
pF1KB4 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS55 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
     120       130       140       150       160       170         

            180       190       200       210       220       230  
pF1KB4 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
       ::::::::::::::::::: :::::::::::::::::..::.:::::::::::::::: .
CCDS55 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH
     180       190       200       210       220       230         

            240       250                     260       270        
pF1KB4 QAQRFRLDNLLNMAYGVKR--------------FSPMTIDGMTSLAGINIPGHPGTGWCI
       :::::::::::::::::::              :::.::::::::.:.::::: ::::::
CCDS55 QAQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCI
     240       250       260       270       280       290         

      280       290       300       310       320       330        
pF1KB4 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN
       :::::.::.:::.:::.:::::::.:::::::::::::::::::::::::::::::::::
CCDS55 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN
     300       310       320       330       340       350         

      340       350         
pF1KB4 GYRLGDRVLQVSFKTNKTHKA
       :::::::::::::::::.::.
CCDS55 GYRLGDRVLQVSFKTNKAHKS
     360       370       380




359 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:46:50 2016 done: Fri Nov  4 20:46:50 2016
 Total Scan time:  2.660 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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