Result of FASTA (omim) for pF1KB3876
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3876, 165 aa
  1>>>pF1KB3876 165 - 165 aa - 165 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0824+/-0.00028; mu= 9.9381+/- 0.018
 mean_var=96.0997+/-19.491, 0's: 0 Z-trim(120.5): 5  B-trim: 764 in 1/55
 Lambda= 0.130832
 statistics sampled from 35783 (35788) to 35783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.42), width:  16
 Scan time:  5.760

The best scores are:                                      opt bits E(85289)
NP_001005 (OMIM: 603632,613308) 40S ribosomal prot ( 165) 1134 223.1 1.6e-58
NP_001190174 (OMIM: 603632,613308) 40S ribosomal p ( 165) 1134 223.1 1.6e-58
NP_001191020 (OMIM: 603632,613308) 40S ribosomal p ( 165) 1134 223.1 1.6e-58
NP_958782 (OMIM: 131950,226670,226730,601282,61213 (4684)  416 88.6 1.4e-16
XP_005251033 (OMIM: 131950,226670,226730,601282,61 (4689)  416 88.6 1.4e-16


>>NP_001005 (OMIM: 603632,613308) 40S ribosomal protein   (165 aa)
 initn: 1134 init1: 1134 opt: 1134  Z-score: 1171.7  bits: 223.1 E(85289): 1.6e-58
Smith-Waterman score: 1134; 99.4% identity (99.4% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSRPETGRPRPKGLEGERPARLTRG
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
NP_001 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG
               70        80        90       100       110       120

              130       140       150       160     
pF1KB3 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
              130       140       150       160     

>>NP_001190174 (OMIM: 603632,613308) 40S ribosomal prote  (165 aa)
 initn: 1134 init1: 1134 opt: 1134  Z-score: 1171.7  bits: 223.1 E(85289): 1.6e-58
Smith-Waterman score: 1134; 99.4% identity (99.4% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSRPETGRPRPKGLEGERPARLTRG
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
NP_001 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG
               70        80        90       100       110       120

              130       140       150       160     
pF1KB3 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
              130       140       150       160     

>>NP_001191020 (OMIM: 603632,613308) 40S ribosomal prote  (165 aa)
 initn: 1134 init1: 1134 opt: 1134  Z-score: 1171.7  bits: 223.1 E(85289): 1.6e-58
Smith-Waterman score: 1134; 99.4% identity (99.4% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSRPETGRPRPKGLEGERPARLTRG
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
NP_001 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG
               70        80        90       100       110       120

              130       140       150       160     
pF1KB3 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
              130       140       150       160     

>>NP_958782 (OMIM: 131950,226670,226730,601282,612138,61  (4684 aa)
 initn: 403 init1: 296 opt: 416  Z-score: 418.6  bits: 88.6 E(85289): 1.4e-16
Smith-Waterman score: 419; 51.8% identity (70.2% similar) in 141 aa overlap (1-129:5-142)

                   10        20        30          40        50    
pF1KB3     MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKS
           ::::. .  ::::.::.::::::::: . :.  ::..   .: ::.::.:: ::..
NP_958 MVAGMLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRA
               10        20        30         40          50       

           60        70        80        90              100       
pF1KB3 RGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSR-------PETGRPRPK
       :: :.: ::: ::::::::::: .::.::::::::::: :.: :       :    :. .
NP_958 RGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQ
        60        70        80        90       100       110       

       110       120          130       140       150       160    
pF1KB3 GLEGERPARLTRGE---ADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPP
       ...:   .   ::     .. .:::                                   
NP_958 AVQGPLGSPPKRGPLPTEEQRVYRRKELEEVSPETPVVPATTQRTLARPGPEPAPATDER
       120       130       140       150       160       170       

>>XP_005251033 (OMIM: 131950,226670,226730,601282,612138  (4689 aa)
 initn: 403 init1: 296 opt: 416  Z-score: 418.5  bits: 88.6 E(85289): 1.4e-16
Smith-Waterman score: 419; 51.8% identity (70.2% similar) in 141 aa overlap (1-129:5-142)

                   10        20        30          40        50    
pF1KB3     MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKS
           ::::. .  ::::.::.::::::::: . :.  ::..   .: ::.::.:: ::..
XP_005 MVAGMLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRA
               10        20        30         40          50       

           60        70        80        90              100       
pF1KB3 RGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSR-------PETGRPRPK
       :: :.: ::: ::::::::::: .::.::::::::::: :.: :       :    :. .
XP_005 RGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQ
        60        70        80        90       100       110       

       110       120          130       140       150       160    
pF1KB3 GLEGERPARLTRGE---ADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPP
       ...:   .   ::     .. .:::                                   
XP_005 AVQGPLGSPPKRGPLPTEEQRVYRRKELEEVSPETPVVPATTQRTLARPGPEPAPATDER
       120       130       140       150       160       170       




165 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:53:43 2016 done: Fri Nov  4 20:53:44 2016
 Total Scan time:  5.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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