GENSCAN 1.0	Date run:  4-Nov-116	Time: 21:02:02

Sequence gi568815581f:55165485_55420876 : 255392 bp : 41.93% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    609    604    6                               1.05
 1.02 Term -  16309  16282   28  0  1  122   44    20 0.658  -2.43
 1.01 Init -  19929  19679  251  0  2   62   41   574 0.973  47.08
 1.00 Prom -  29308  29269   40                              -6.25

 2.00 Prom +  33160  33199   40                              -6.95
 2.01 Init +  36124  36228  105  0  0   76  115   111 0.954  12.87
 2.02 Term +  44148  44420  273  2  0   48   48   168 0.522   3.29
 2.03 PlyA +  45223  45228    6                               1.05

 3.06 PlyA -  45749  45744    6                               1.05
 3.05 Term -  55068  54900  169  2  1   36   41   100 0.205  -3.53
 3.04 Intr -  58178  58012  167  2  2   38  110   107 0.724   5.74
 3.03 Intr -  59512  59424   89  2  2   77   71    50 0.769   0.97
 3.02 Intr -  59649  59589   61  0  1  106   68    47 0.708   1.89
 3.01 Init -  60966  60907   60  0  0   69   94    31 0.848   3.10
 3.00 Prom -  61392  61353   40                              -3.65

 4.06 PlyA -  62748  62743    6                               1.05
 4.05 Term -  64328  63945  384  2  0   11   48   252 0.398   7.40
 4.04 Intr -  73600  73490  111  1  0   73   64   161 0.121  11.86
 4.03 Intr -  76853  76669  185  0  2   87   36    98 0.760   3.09
 4.02 Intr -  79385  79257  129  0  0   61  110    39 0.464   3.15
 4.01 Init -  85064  85001   64  2  1   59   53    31 0.306  -1.94
 4.00 Prom -  86385  86346   40                              -5.75

 5.00 Prom +  89226  89265   40                              -7.95
 5.01 Init +  90803  90910  108  1  0   65   68    84 0.666   4.37
 5.02 Intr +  99977 100115  139  1  1   90  101   115 0.646  12.12
 5.03 Intr + 102267 102602  336  1  0   98  111   313 0.708  29.17
 5.04 Term + 105523 105635  113  2  2   26   42    74 0.069  -5.66
 5.05 PlyA + 105801 105806    6                               1.05

 6.06 PlyA - 106032 106027    6                               1.05
 6.05 Term - 107540 107434  107  0  2   45   47   154 0.866   4.59
 6.04 Intr - 114560 114437  124  2  1   77   99   108 0.980  10.04
 6.03 Intr - 118863 118768   96  0  0   73   98    61 0.966   4.89
 6.02 Intr - 119125 119029   97  0  1   67   99    76 0.816   5.69
 6.01 Init - 119951 119785  167  2  2   73   76    66 0.670   3.05
 6.00 Prom - 124304 124265   40                              -7.85

 7.05 PlyA - 124829 124824    6                               1.05
 7.04 Term - 127879 127770  110  2  2   73   42   155 0.038   7.09
 7.03 Intr - 134907 134820   88  0  1   51   75   106 0.045   4.22
 7.02 Intr - 138062 138008   55  1  1   68   52    31 0.147  -4.44
 7.01 Init - 138917 138775  143  2  2   79  100    69 0.567   6.89
 7.00 Prom - 142864 142825   40                              -4.25

 8.00 Prom + 146887 146926   40                              -6.35
 8.01 Init + 147487 147616  130  0  1   49   91    23 0.451  -0.79
 8.02 Intr + 149743 149963  221  2  2   85   94   333 0.585  30.70
 8.03 Intr + 155180 155317  138  1  0   12   24   185 0.001   4.24
 8.04 Intr + 160713 160864  152  2  2   53   21   107 0.000  -1.46
 8.05 Intr + 169109 169369  261  2  0   92   36   166 0.209   7.48
 8.06 Intr + 169792 169934  143  1  2   94  -15   112 0.124   0.58
 8.07 Intr + 174005 174193  189  0  0   98   44    76 0.048   2.84
 8.08 Intr + 182099 182192   94  0  1   67    1   114 0.030  -1.30
 8.09 Intr + 183776 183857   82  2  1  101   44   103 0.518   5.92
 8.10 Intr + 200729 200813   85  1  1   45   76    70 0.016  -0.03
 8.11 Intr + 205573 205633   61  2  1   34  115    87 0.029   2.87
 8.12 Intr + 207581 207775  195  2  0   59   76    66 0.070   0.11
 8.13 Term + 207882 208080  199  0  1   -2   48   209 0.175   3.79
 8.14 PlyA + 209940 209945    6                               1.05

 9.00 Prom + 210570 210609   40                              -4.05
 9.01 Init + 216929 216980   52  1  1   82   92    39 0.356   5.07
 9.02 Intr + 217463 217629  167  0  2   73   19   108 0.329   1.16
 9.03 Intr + 220867 220972  106  0  1   92   89    45 0.265   3.87
 9.04 Term + 221860 222062  203  2  2   19   38   154 0.176   0.07
 9.05 PlyA + 222164 222169    6                               1.05

10.07 PlyA - 223848 223843    6                               1.05
10.06 Term - 229050 228850  201  0  0  106   47   190 0.992  13.11
10.05 Intr - 233744 233643  102  2  0   27   88    85 0.119   1.85
10.04 Intr - 236054 235985   70  1  1  104   95     5 0.167   1.07
10.03 Intr - 238384 238283  102  0  0   77   69    81 0.638   3.47
10.02 Intr - 245933 245773  161  2  2   93   87   123 0.984  10.56
10.01 Intr - 248748 248667   82  2  1  109   73    61 0.883   5.42

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 155037 154895  143  2  2   97   39    72 0.981   2.28
S.002 Init - 155271 155081  191  0  2   76   35   200 0.900  10.03


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:55165485_55420876|GENSCAN_predicted_peptide_1|92_aa
MPHGFVILQYEKKKKKEKEEEKEEEEEEEKEKEKEKEKEKEKEKEKEKEKEKEKEKKKKK
KKKKKKKKKKKKKKKKKKKKIVARISRYPKGK

>gi568815581f:55165485_55420876|GENSCAN_predicted_CDS_1|279_bp
atgccccatggctttgtaatacttcagtatgagaagaagaagaagaaggagaaggaggag
gagaaggaggaggaggaggaggaggagaaggagaaggagaaggagaaggagaaggagaag
gagaaggagaaggagaaggagaaggagaaggagaaggagaaggagaagaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaaaaagaagaagaagaaa
atagtggccagaatcagcagataccctaagggtaaatag

>gi568815581f:55165485_55420876|GENSCAN_predicted_peptide_2|125_aa
MPRKFEYIPGKKSNQDVTAKVVAKEMFTAKTGTTKYSPPVLDKGEQLRTRAQLVNAVSYL
MLMLWTTGDFMSLLSPRSHHGLKDSFGFLRTWLCIPPFTSLFRGDFPLGIRLFILWNLEL
HQEAG

>gi568815581f:55165485_55420876|GENSCAN_predicted_CDS_2|378_bp
atgcctaggaaatttgaatacattccaggaaagaagtccaatcaagacgttactgctaag
gtcgtagcaaaggaaatgttcacagcaaagacagggacgaccaagtacagtccacctgtt
ctggataagggcgagcagctgaggacacgtgctcaactagtcaatgctgtttcatatctg
atgctgatgctgtggacaacaggggacttcatgtcattgttgtctcccaggtcacatcat
gggctgaaagatagcttcggctttctgagaacatggctctgcatcccaccatttacttcc
ctcttccgaggggattttcctcttggaatcaggctcttcattctgtggaatctggagctt
caccaagaggcaggctga

>gi568815581f:55165485_55420876|GENSCAN_predicted_peptide_3|181_aa
MKFFGLYPKSSKGLSSGQLEREKVRADDLWGPVSYGVWEGAWKPAGGQGKLAASPNQDEN
VVIVSLALPQIGQCFKRSVLELSVAREGASMGPNEWAHRAGSVSQKSRQEQEDRSGRGDP
MVRAKGHSATRDVGGSATSSQWKSKEEGRLHMGSFYGSGLERLNNTSARIPLARNKSHSH
P

>gi568815581f:55165485_55420876|GENSCAN_predicted_CDS_3|546_bp
atgaagttttttggactttatcccaaaagttccaaggggctctcatcagggcagctggag
agggagaaagtaagagctgatgacctatgggggcctgtgagctatggggtctgggaaggt
gcttggaaaccagctggaggtcaagggaaattagcagcctccccaaaccaggatgaaaac
gtagttattgtttctttggcactcccccagattggtcaatgcttcaagcgttctgtcctt
gagctatctgtggccagagaaggtgccagtatgggtcccaatgaatgggctcacagggca
gggagtgtaagccagaagtcaaggcaagaacaagaggatcgcagtggcagaggagacccc
atggtcagagccaaaggtcattcagctaccagggatgttggaggttctgcaacatctagc
cagtggaaaagtaaagaggaaggaagattgcatatgggaagtttttatgggtcgggcctg
gaaaggttgaacaacacttctgctcgtattccactggctagaaataagtcacatagccac
ccttaa

>gi568815581f:55165485_55420876|GENSCAN_predicted_peptide_4|290_aa
MVKGKGGASISHGKKGSKREAENNKNDACDYLRVPITCQAFHMYHLYSDPHSHLPYECDD
HLWAAPKQKLGEQHLYQGKDLVSNNPYDIINAFLDVIDQIVSPPLPHSYVEVLAPSTQNV
AIFGNKPPAAAAAAAAAAAPLKSLVEGEKSTDKLSSRSVFGEGCTESPPPTKTYPALMSV
ELRERNWIRVVANGDGEKRSASGCILKAVPVRFADELQMECKRKKGAKGDLKFVAGAMEK
VEFPLTQKGKRLGGADLGSTARNLVLDMSNSIRALLPSPVLNRGLIIYCQ

>gi568815581f:55165485_55420876|GENSCAN_predicted_CDS_4|873_bp
atggtgaaaggcaaagggggagccagtatatctcatggaaagaaaggaagcaagagagag
gcggaaaataataaaaatgatgcctgtgactatttgagggtgcccattacgtgccaagca
tttcacatgtatcatctctactctgatcctcatagccacctgccatatgagtgtgatgac
cacctttgggcagcccctaaacaaaaacttggagaacagcatttgtatcaaggtaaagat
ctggtatcaaataatccatatgatattattaatgcctttttggatgttatcgaccaaatt
gtgtcccctcccctgccccattcatatgttgaagtcctagctcccagtactcagaatgtg
gctatatttggaaataagcctccagcagcagcagcagcagcagcagcagcagcagcgccc
ctgaagtctcttgtggaaggtgagaaatctaccgataagctttctagtaggagtgtcttt
ggggagggatgcacagagtcacctcctccaacgaagacttatccagctctaatgtcagta
gagctgagggagagaaactggattagagtggtagcaaatggtgatggtgagaaacgatca
gcttctggatgtattctgaaggcagtgccagtgcgatttgctgatgaactgcagatggag
tgtaagaggaagaaaggagccaagggtgacttaaagtttgttgctggagcaatggagaaa
gtggagtttccattaacccagaaggggaagaggctgggaggagcagatcttggaagcaca
gccaggaatttggttttggacatgtcaaattccatcagggcgttgctcccatccccagtg
ttaaacaggggtctcattatatattgccagtga

>gi568815581f:55165485_55420876|GENSCAN_predicted_peptide_5|231_aa
MGYHDACKEFSTVPSPVSSQQIIVLTVTIISGILPLGKKFECIAMEKMSRPLPLNPTFIP
PPYGVLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSPTVPQSAFLGPTLWDKTLPY
DGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHPPGLQPASSAAPSVMDLSSRASAPLHP
GIPSPNCMQSPIRPVASRTPSAPDVTSKNVFSHYQMSPGHNTVTPGGEPLV

>gi568815581f:55165485_55420876|GENSCAN_predicted_CDS_5|696_bp
atgggttaccatgatgcatgcaaagaatttagcacagtgcctagcccagtcagtagtcag
caaataatagttcttactgttacaataatcagtggcattcttcctctagggaaaaaattt
gagtgcatcgcgatggagaaaatgtcccgaccgctccccctgaatcccacctttatcccg
cctccctacggcgtgctcaggtccctgctggagaacccgctgaagctcccccttcaccac
gaagacgcatttagtaaagataaagacaaggaaaagaagctggatgatgagagtaacagc
ccgacggtcccccagtcggcattcctggggcctaccttatgggacaaaacccttccctat
gacggagatactttccagttggaatacatggacctggaggagtttttgtcagaaaatggc
attccccccagcccatctcagcatgaccacagccctcaccctcctgggctgcagccagct
tcctcggctgccccctcggtcatggacctcagcagccgggcctctgcaccccttcaccct
ggcatcccatctccgaactgtatgcagagccccatcagaccagttgcaagtaggaccccc
agtgccccagatgtgacaagtaaaaatgtcttcagtcactaccaaatgtcccctgggcat
aatacagtcactcccggtggagaaccactggtctag

>gi568815581f:55165485_55420876|GENSCAN_predicted_peptide_6|196_aa
MERHVKGSGECCLRNENNPWNPIKHDPAQMFTLSWWLQTKVLNGHSQDFGYTWDPSRPVP
RLPNHGAGNQPSPANYGAAELMSDSQAQPMFNLEPTSPYCPTHSWIKSLSHSYLDPREHT
ESSEAGISTLTYNGGNKCRRVIWLVDPTTFAGWPMTSSLVAGIRGEDKLYKKQKNVYLSP
EPCRLPPLQDLLAPDE

>gi568815581f:55165485_55420876|GENSCAN_predicted_CDS_6|591_bp
atggaaagacatgtcaaaggctcaggggaatgctgcttaagaaatgaaaacaatccatgg
aatcccatcaaacatgatcctgcacaaatgtttactctttcttggtggctacagaccaaa
gtcctcaatggacactctcaagactttggatatacctgggatccaagtcgcccagtgccc
aggcttcccaaccatggggcaggcaatcagccatcaccagctaattatggagcagctgag
ttgatgagcgactcccaggcccagccaatgtttaacctggagcccacttcaccctattgc
ccaacacactcttggatcaagtccttgtcacacagttacctggatcccagggagcacaca
gaatcctctgaagcaggtatcagcaccctcacttacaatggagggaacaaatgcagaaga
gttatatggctggtagatcccaccacctttgcgggttggccgatgacatcctctctggtg
gcagggatccgtggagaagataaactctacaagaaacagaaaaatgtctacctgtctcca
gaaccatgcagactccctccccttcaggatctcctagcccctgatgaatga

>gi568815581f:55165485_55420876|GENSCAN_predicted_peptide_7|131_aa
MTTNGRGTWPMSLLAIAPCDGYDSAPSTSSSLGREPLPRHVGSPCGRRPSAIILASSALD
NEPYHLESTQNKKTKEKVLGNTDSLGTAEEEDSVKEHSGDRPLPSPAATCNGRSTGIPYN
SSGTYSTSNLN

>gi568815581f:55165485_55420876|GENSCAN_predicted_CDS_7|396_bp
atgacaactaatggccgaggcacgtggcccatgagccttctcgccattgccccctgtgat
ggttatgacagtgcaccttccacctcctcctccctgggccgggagcctctccccagacat
gtggggtcaccgtgtggcagaagacccagtgccataatactggcttctagtgcactggac
aatgagccctatcacctggagagcacacagaacaagaaaaccaaagaaaaagtcctgggg
aacactgacagtttaggcacagctgaagaggaggactctgtaaaagagcacagtggcgat
cggccgttgcccagtccagctgccacatgtaatggtcgttccaccggcatcccctataac
tcctcaggcacatatagcacctcaaatcttaattaa

>gi568815581f:55165485_55420876|GENSCAN_predicted_peptide_8|649_aa
MALRYLWGETGPGFVSQVLCHLLFDTGEATYLVCGPVRFLHSAGQLLPANRNTPSPIDPD
TIQVPVGYEPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDK
YWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQETIRSFREDGKEFPCSYA
RAGWLMVWEWVVETLFHSVTSPTVHRLAPALCTSILWPGKGVRGRKEKGGSLMNFACEDD
ALREGNMIPAHGIRIPPRLNTVVQLNSPSSVFHFGPFSNPVRDSGYNKQGDRFGDGKPYP
GPSASSLGSIAETPSPFSQAPSPLQPPQNYRGKLTQERLHEKEPLKDQTSASPWGPQMCS
LHQAEISKSRPVGPPAHSRGPSSALVACCHCAVPDAVLANHGLFPRPFYFPASSYDKVPV
PFSQRETSSPQCETPFKAALLSMIGITDAPRFIGTVLRQTGNMSAVGLNRVEKGFVREKT
AGKSKKVLRLPKKMRTEEDKDSQQADIDGISTMAKERDRSGGPGGNTGFLGQAQGPSAVR
SLGTWCPASQLLQPWLKKANIELRPWLQRVQASSIGSFHMVLSLLSWRTSARTVQNENVG
SEPPHRVPTGAPPSGAVRREPCPSDPGMVDPLTAYTLHLEKPQTLNASL

>gi568815581f:55165485_55420876|GENSCAN_predicted_CDS_8|1950_bp
atggcactaaggtatctttggggagaaacgggacctggttttgtttcgcaggtcctttgc
catttgctgtttgatactggggaagccacgtaccttgtctgtggtccagttaggtttctc
cactctgcaggtcagctgttgccagcaaaccgcaatacaccaagtcccattgatcctgac
accatccaggtcccagtgggttatgagccagacccagcagatcttgccctttccagcatc
cctggccaggaaatgtttgaccctcgcaaacgcaagttctctgaggaagaactgaagcca
cagcccatgatcaagaaagctcgcaaagtcttcatccctgatgacctgaaggatgacaag
tactgggcaaggcgcagaaagaacaacatggcagccaagcgctcccgcgacgcccggagg
ctgaaagagaaccagatcgccatccgggcctcgttcctggagaaggagaactcggccctc
cgccaggagactattcgttccttcagagaggacggaaaagaattcccctgctcatatgcc
agagcaggatggctgatggtatgggaatgggtggtagagacgttgtttcatagtgtgact
tcaccaacagttcatagactagcgccagctttgtgcacaagcatcctgtggcctgggaag
ggggtgagaggaaggaaagaaaaaggagggtccctcatgaactttgcctgtgaagacgat
gcactcagggaaggaaacatgattcctgcccatgggatcaggatcccgccacgtctgaac
accgttgtacagcttaacagtccctcatctgtttttcattttggccctttcagcaaccct
gtgagggactcagggtacaataaacaaggagacagatttggtgatggcaaaccttaccca
ggcccatccgcctcttccctgggcagcattgcagaaactccttcacccttctctcaggcc
ccatcccccctgcagcctccccagaactacagagggaagctgacacaagaaaggcttcat
gaaaaggagcccttaaaagaccaaacctctgcatctccctgggggcctcagatgtgttcc
ctgcaccaagctgaaatcagcaaatctcggccagttggacctccagcccactcacgtgga
ccttcctcagccctggtagcctgctgccattgtgctgtgccagatgctgtgctggctaac
catgggctgtttccaagacctttctatttcccagcctcctcatacgacaaagttcctgtg
cctttcagccagagggaaacatcttcaccccagtgtgaaaccccatttaaagctgccttg
ctgtcaatgattggaatcacagatgctccacgcttcattggaaccgtcctgagacagaca
ggaaacatgtcagcagtgggtctcaatagggtggagaagggttttgttcgggaaaaaaca
gcaggcaaatcaaagaaagtactgaggctcccaaagaaaatgagaacagaagaggacaaa
gacagccagcaggcagatattgatggcatcagcaccatggcaaaggagagagacagatct
ggaggcccagggggaaacacaggtttcttgggccaggcccagggtcccagtgctgtgcgc
agtctagggacttggtgccctgcatcccagctgctccagccatggctgaaaaaggccaac
atagagctcaggccatggcttcagagggtgcaagcgtcaagcattggcagcttccacatg
gtgttgagcctgctgtcatggagaacctctgctaggacagtgcaaaatgaaaatgtgggg
tcagagcccccacacagagtacctactggggcaccccctagtggagctgtgagaagagag
ccatgtccttcagatcccggaatggtagatccactgacagcttacaccttgcacctggaa
aagccgcagacactcaatgccagtctgtga

>gi568815581f:55165485_55420876|GENSCAN_predicted_peptide_9|175_aa
MGKWVESQGTMDTPRFKDEEIKAQHGQVNCLSLSSPLIARSHSPKRICEEPFISHWLELL
MPISENKDRLGPDPCEVLAHPSPSPMIVSFLRAPQKQKLLGFLYSLQNADAQMNNTKYGT
LVEKTGKSASLSTWSCTLSHSLATVIYLCDANKQIDKSSPKRQIQIKEVGGQRII

>gi568815581f:55165485_55420876|GENSCAN_predicted_CDS_9|528_bp
atgggaaagtgggtggagagccaagggaccatggatacaccaaggtttaaagatgaggaa
atcaaggctcagcatggccaagtcaactgcttgtctctttcctctccactgattgccagg
tcacattccccaaaacggatctgtgaagagccttttatttctcactggctcgagctccta
atgccgataagtgaaaataaagatagacttgggccagatccatgtgaagtgctggctcac
ccttcaccttcccccatgattgtaagtttcctgagggctccccagaagcagaagctctta
ggcttcctgtacagcctgcagaatgcagatgcacaaatgaataacacaaagtacgggacc
cttgttgaaaagacaggtaaatcagcatcactttctacttggtcatgcacactgtcacat
tcactggccacagtcatctatctgtgtgatgccaacaaacagattgacaaaagctcccca
aaacgtcaaatccagattaaggaagttggggggcagagaatcatctag

>gi568815581f:55165485_55420876|GENSCAN_predicted_peptide_10|239_aa
XFMNHRAPANGRYKPTCYEHAANCYTHAFLIVPAIVGSALLHRLSDDCWEKITAWIYGMG
LCALFIVSTVFHIVSWKKSHLRLNLRELGPLASHMRWFIWLMAAGGTIYVFLYHEKYKVV
ELFFYLTMGFSPALVVTSMYRTVILEGRETKKMSFEFTPVVSLETLSKQQQKENNTDGLQ
ELACGGLIYCLGVVFFKSDGIIPFAHAIWHLFVATAAAVHYYAIWKYLYRSPTDFMRHL

>gi568815581f:55165485_55420876|GENSCAN_predicted_CDS_10|720_bp
nngttcatgaaccatcgagctccagccaatggccgctacaagccaacttgctatgaacat
gctgctaactgttacacacacgcattcctcattgttccggccatcgtgggcagtgccctc
ctccatcggctgtctgatgactgctgggaaaagataacagcatggatttatggaatggga
ctctgtgccctcttcatcgtttctacagtatttcacattgtatcatggaaaaagagccac
ttaaggttaaatcttcgtgaacttggacccctggcatctcatatgcgttggtttatctgg
ctcatggcagctggaggaaccatttatgtatttctctaccatgaaaaatataaggtggtt
gaactctttttctatctcacaatgggattctctccagccttggtggtgacatcaatgtac
aggactgtgatccttgaaggaagagaaaccaagaaaatgagctttgaattcaccccagta
gtttccctggagacactttccaaacagcaacaaaaggagaacaacaccgatggacttcag
gaacttgcctgtgggggcttaatttattgcttgggagttgtgttcttcaagagtgatggc
atcattccatttgcccacgccatctggcacctgtttgtggccacggcagctgcagtgcat
tactacgccatttggaaatacctttaccgaagtcctacggactttatgcggcatttatga