GENSCAN 1.0	Date run:  4-Nov-116	Time: 21:03:16

Sequence gi568815586r:54141758_54357650 : 215893 bp : 47.76% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    950   1064  115  1  1   56  106    38 0.617   2.78
 1.02 Intr +   2225   2327  103  0  1  117   59    40 0.611   3.23
 1.03 Intr +  21306  21451  146  0  2   59   78   111 0.648   7.13
 1.04 Intr +  23242  23264   23  2  2  111  115    12 0.656   3.46
 1.05 Intr +  30778  30799   22  0  1  129   75    -3 0.155  -0.38
 1.06 Intr +  32295  32413  119  1  2   46  110    50 0.211   3.18
 1.07 Term +  33688  33780   93  0  0  110   43    33 0.128  -1.17
 1.08 PlyA +  34063  34068    6                               1.05

 2.03 PlyA -  34076  34071    6                               1.05
 2.02 Term -  40866  40339  528  0  0  138   48   269 0.977  22.15
 2.01 Init -  42132  41899  234  0  0   82   55   388 0.540  33.04
 2.00 Prom -  54210  54171   40                              -4.36

 3.00 Prom +  55047  55086   40                              -5.46
 3.01 Init +  58646  58665   20  1  2   91   47    11 0.242  -3.13
 3.02 Intr +  58703  58884  182  2  2   77   50   130 0.512   7.61
 3.03 Intr +  64478  64542   65  0  2   93   47    39 0.166  -1.26
 3.04 Intr +  68555  68604   50  1  2  102  110     5 0.494   1.58
 3.05 Intr +  69775  69946  172  1  1   96   98    47 0.870   6.45
 3.06 Term +  76809  76880   72  2  0   90   55    49 0.322  -0.29
 3.07 PlyA +  77212  77217    6                               1.05

 4.07 PlyA -  79800  79795    6                               1.05
 4.06 Term - 100148  99998  151  1  1  126   43   134 0.996  10.08
 4.05 Intr - 104458 104358  101  1  2   81   81    42 0.758   1.71
 4.04 Intr - 110470 110284  187  0  1  112   99    80 0.999  11.19
 4.03 Intr - 115935 115757  179  0  2  121   80   175 0.994  18.72
 4.02 Intr - 117916 117752  165  1  0  117   94   -12 0.767   2.46
 4.01 Init - 122397 122347   51  0  0   57   23    67 0.339  -1.74
 4.00 Prom - 126483 126444   40                              -8.86

 5.00 Prom + 128478 128517   40                              -5.26
 5.01 Init + 139051 139065   15  0  0   83  105    -2 0.834   1.28
 5.02 Intr + 139629 139745  117  2  0   90   83   110 0.999  11.36
 5.03 Intr + 140038 140184  147  0  0   48   81   123 0.990   8.03
 5.04 Intr + 140333 140543  211  1  1   98   89   231 0.991  22.69
 5.05 Intr + 140637 140729   93  1  0   85   69    47 0.844   2.44
 5.06 Intr + 140816 140908   93  0  0   61   68    91 0.947   4.34
 5.07 Intr + 141043 141117   75  2  0  104  115    85 0.999  12.29
 5.08 Intr + 141322 141477  156  2  0   52   66   152 0.942   9.38
 5.09 Intr + 142055 142210  156  0  0   75   86    94 0.982   7.88
 5.10 Term + 145196 145209   14  0  2  113   49     9 0.649  -2.14
 5.11 PlyA + 145311 145316    6                               1.05

 6.04 PlyA - 146342 146337    6                               1.05
 6.03 Term - 151624 150617 1008  1  0  122   49  1028 0.999  94.40
 6.02 Intr - 153470 153378   93  2  0   76  109    66 0.681   7.66
 6.01 Init - 155262 155179   84  0  0   68   98    60 0.517   5.82
 6.00 Prom - 157659 157620   40                              -9.16

 7.00 Prom + 161942 161981   40                              -2.06
 7.01 Init + 182048 182092   45  1  0   64   89    21 0.416  -1.46
 7.02 Intr + 183326 183424   99  1  0   54   54   126 0.623   6.11
 7.03 Intr + 198790 198858   69  0  0   90  100    84 0.701   9.18
 7.04 Intr + 200449 200530   82  0  1   71   48   162 0.954   9.71
 7.05 Intr + 201468 201559   92  1  2  106   78    81 0.994   8.61
 7.06 Intr + 203703 203758   56  2  2  106   83    28 0.913   1.88
 7.07 Intr + 206010 206087   78  0  0   41  110   100 0.928   6.17
 7.08 Intr + 206243 206294   52  2  1  117   98    19 0.952   4.71
 7.09 Intr + 207863 207901   39  1  0   99   80    44 0.838   3.12
 7.10 Term + 208719 208766   48  2  0  120   49    44 0.849   1.00
 7.11 PlyA + 210070 210075    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:54141758_54357650|GENSCAN_predicted_peptide_1|206_aa
MWMLSNRGQTNKGISRPCRTQGSSPRVDPKGFSSAASLGLLEPDQNSLLTRDRQTDLFPV
PQLPVVLRMETLRHRLGQVAYQILRAVSAGGRLYTAAGSAHRNGLEDGPQELLKAPGLVT
RDDKLRPTMVPGFRSSGEHTTLPLKTVLAKQRYQTQEQNDANSVIHRGHTDLPYSQPLAV
GAEKFLDISDTMVPFCKYPLHGGGKI

>gi568815586r:54141758_54357650|GENSCAN_predicted_CDS_1|621_bp
atgtggatgttgagcaatagaggacagacaaacaaaggaatctccagaccctgcaggacc
caaggcagcagcccacgagtggatcctaaaggattttcatcagctgcaagtctggggtta
ctagagcctgaccaaaattctctactgaccagagacagacagacagacctgttccctgtt
ccccaacttccagtggtgctgcgcatggagacgctgaggcaccgattagggcaagtggcc
taccagatcttgagggctgtcagtgctggtggcagactttacaccgcagcaggcagtgcc
cacagaaatgggcttgaggatggaccacaagaactgctcaaagcacctggactagtaaca
agagatgacaagctgaggcctacgatggtacctggcttcaggagctcaggggaacacact
accctaccccttaaaacggtacttgcaaagcagcgctaccaaacacaggaacaaaatgat
gctaactcagtgattcacaggggacacacagaccttccatacagccagccccttgcagtt
ggggctgagaaattcctggacatatctgacacaatggtcccgttttgcaaatatccactc
catggaggtggtaagatttag

>gi568815586r:54141758_54357650|GENSCAN_predicted_peptide_2|253_aa
MEPQPCPGSLAESFLEEELRLNAELSQLQFSEPVGIIYNPVEYAWEPHRNYVTRYCQGPK
EVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQEHPKRPVLGLECPQSEVS
GARFWGFFRNLCGQPEVFFHHCFVHNLCPLLFLAPSGRNLTPAELPAKQREQLLGICDAA
LCRQVQLLGVRLVVGVGRLAEQRARRALAGLMPEVQVEGLLHPSPRNPQANKGWEAVAKE
RLNELGLLPLLLK

>gi568815586r:54141758_54357650|GENSCAN_predicted_CDS_2|762_bp
atggagccccagccctgccctggaagcttggctgagagcttcctggaggaggagcttcgg
ctcaatgctgagctgagccagctgcagttttcggagcctgtgggcatcatctacaatccc
gtggagtatgcatgggagccacatcgcaactacgtgactcgctactgccagggccccaag
gaagtactcttcctgggcatgaaccctggaccttttggcatggcccagactggggtgccc
tttggggaagtaagcatggtccgggactggttgggcattgtggggcctgtgctgacccct
ccccaagagcatcctaaacgaccagtgctgggactggagtgcccacagtcagaagtgagt
ggtgcccgattctggggctttttccggaacctctgtggacagcctgaggtcttcttccat
cactgttttgtccacaatctatgccctctgcttttcctggctcccagcgggcgcaacctt
actcctgctgagctgcctgccaagcagcgagaacagcttcttgggatctgtgatgcagcc
ctctgccggcaggtgcagctgctgggggtgcggctggtggtgggagttgggcgactggca
gagcagcgggcacgacgggctctggcaggcctgatgccagaggtccaggtggaagggctc
ctgcatccctctccccgtaacccacaggccaacaagggctgggaggcagtggccaaggaa
agattgaatgagctggggctgctgccactgctgttgaaatga

>gi568815586r:54141758_54357650|GENSCAN_predicted_peptide_3|186_aa
MRLQQVRVPSALKTEEANDISCPTWKVKVQKTEGTRLLHILRSVISCRKKHPTCRKKHST
RMTQSLPSLLLKKARLRSWEGRIELEKGICPSGAYSEVVLGAFIRGAVDRVFGNSSRRKI
LKLEPTPNLRKEKVLSRMGSVEKKARKGIPPIPARQKHKVNSKPYLLHHGQTQAHNSQRF
GYTKLL

>gi568815586r:54141758_54357650|GENSCAN_predicted_CDS_3|561_bp
atgcggctccaacaggtaagggtcccctcagcattgaagacagaagaggcaaatgacatt
tcatgtcccacttggaaagtcaaggtgcagaaaacagaggggaccagactccttcatatc
ctgcgcagcgtcatctcctgccgcaagaagcaccccacctgccgcaagaagcactccacc
cgcatgactcagtctttgcccagtctcctgctgaagaaagccaggctcaggtcatgggaa
ggtcggattgagctggagaaagggatatgcccatcaggtgcttactcagaggtggtgctg
ggtgctttcataagaggggcagtggacagagtctttggaaatagctcgaggagaaagatt
ctgaagctggagcccactccaaatctcaggaaagagaaggtcctgagtaggatggggagt
gtggaaaagaaggcccggaagggaataccacccatcccagcaagacaaaaacataaagtc
aattcaaagccttatcttctgcatcatggccagactcaggcacacaacagccagcgcttc
ggttacacaaaactgctctga

>gi568815586r:54141758_54357650|GENSCAN_predicted_peptide_4|277_aa
MRVEPELDKADRYQGPYCSTAASCYGNGLGQLRSGAQAAGWGQGSCQPAKTQTWEGRPLL
LAQRERKNWGDPGPGGLSLSGGTVCDMGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQ
VEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKEGENNKPREKSESNKRKSNF
SNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAK
EANVKCPQIVIAFYEERLTWHAYPEDAENKEKETAKS

>gi568815586r:54141758_54357650|GENSCAN_predicted_CDS_4|834_bp
atgagagtagaacctgaactggacaaagcagacagataccagggaccctattgtagtact
gctgccagttgctatggcaacggactgggacagctgcgcagtggcgcccaggcagctggg
tgggggcaggggagctgccagcccgccaagacccagacctgggaggggaggcccctcctg
ttagcccagagggaaagaaagaactggggcgatccgggacctggtggccttagtctttca
ggtggaacggtgtgcgacatgggaaagaaaaccaagcggacagctgacagttcttcttca
gaggatgaggaggagtatgttgtggagaaggtgctagacaggcgcgtggttaagggacaa
gtggaatatctactgaagtggaaaggcttttctgaggagcacaatacttgggaacctgag
aaaaacttggattgccctgagctaatttctgaatttatgaaaaagtataagaagatgaag
gagggtgaaaataataaacccagggagaagtcagaaagtaacaagaggaaatccaatttc
tcaaacagtgccgatgacatcaaatctaaaaaaaagagagagcagagcaatgatatcgct
cggggctttgagagaggactggaaccagaaaagatcattggggcaacagattcctgtggt
gatttaatgttcctaatgaaatggaaagacacagatgaagctgacctggttcttgcaaaa
gaagctaatgtgaaatgtccacaaattgtgatagcattttatgaagagagactgacatgg
catgcatatcctgaggatgcggaaaacaaagagaaagaaacagcaaagagctaa

>gi568815586r:54141758_54357650|GENSCAN_predicted_peptide_5|358_aa
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG
GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGTSL

>gi568815586r:54141758_54357650|GENSCAN_predicted_CDS_5|1077_bp
atgtctaagtcagagtctcctaaagagcccgaacagctgaggaagctcttcattggaggg
ttgagctttgaaacaactgatgagagcctgaggagccattttgagcaatggggaacgctc
acggactgtgtggtaatgagagatccaaacaccaagcgctccaggggctttgggtttgtc
acatatgccactgtggaggaggtggatgcagctatgaatgcaaggccacacaaggtggat
ggaagagttgtggaaccaaagagagctgtctccagagaagattctcaaagaccaggtgcc
cacttaactgtgaaaaagatatttgttggtggcattaaagaagacactgaagaacatcac
ctaagagattattttgaacagtatggaaaaattgaagtgattgaaatcatgactgaccga
ggcagtggcaagaaaaggggctttgcctttgtaacctttgacgaccatgactccgtggat
aagattgtcattcagaaataccatactgtgaatggccacaactgtgaagttagaaaagcc
ctgtcaaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctgga
aactttggtggtggtcgtggaggtggtttcggtgggaatgacaacttcggtcgtggagga
aacttcagtggtcgtggtggctttggtggcagccgtggtggtggtggatatggtggcagt
ggggatggctataatggatttggtaatgatggtggttatggaggaggcggccctggttac
tctggaggaagcagaggctatggaagtggtggacagggttatggaaaccagggcagtggc
tatggcgggagtggcagctatgacagctataacaacggaggcggaggcggctttggcggt
ggtagtggaagcaattttggaggtggtggaagctacaatgattttgggaattacaacaat
cagtcttcaaattttggacccatgaagggaggaaattttggaggcagaagctctggcccc
tatggcggtggaggccaatactttgcaaaaccacgaaaccaaggaacgtccttgtga

>gi568815586r:54141758_54357650|GENSCAN_predicted_peptide_6|394_aa
MSDRRDQEDLAKSTWNLLLTAGKTDARKQSRNRVIQLSTSELGEMELTWQEIMSITELQG
LNAPSEPSFEPQAPAPYLGPPPPTTYCPCSIHPDSGFPLPPPPYELPASTSHVPDPPYSY
GNMAIPVSKPLSLSGLLSEPLQDPLALLDIGLPAGPPKPQEDPESDSGLSLNYSDAESLE
LEGTEAGRRRSEYVEMYPVEYPYSLMPNSLAHSNYTLPAAETPLALEPSSGPVRAKPTAR
GEAGSRDERRALAMKIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVA
AQNCRKRKLETIVQLERELERLTNERERLLRARGEADRTLEVMRQQLTELYRDIFQHLRD
ESGNSYSPEEYALQQAADGTIFLVPRGTKMEATD

>gi568815586r:54141758_54357650|GENSCAN_predicted_CDS_6|1185_bp
atgtctgaccgtagagatcaggaagaccttgccaaatctacttggaatctcttgctgacg
gcagggaaaacagatgcaaggaagcagagcaggaacagggtgatacagctgtccacttca
gagctaggagagatggaactgacttggcaggagatcatgtccatcaccgagctgcagggt
ctgaatgctccaagtgagccatcatttgagccccaagccccagctccataccttggacct
ccaccacccacaacttactgcccctgctcaatccacccagattctggcttcccacttcct
ccaccaccttatgagctcccagcatccacatcccatgtcccagatcccccatactcctat
ggcaacatggccataccagtctccaagccactgagcctctcaggcctgctcagtgagccg
ctccaagaccccttagccctcctggacattgggctgccagcagggccacctaagccccaa
gaagacccagaatccgactcaggattatccctcaactatagcgatgctgaatctcttgag
ctggaggggacagaggctggtcggcggcgcagcgaatatgtagagatgtacccagtggag
tacccctactcactcatgcccaactccttggcccactccaactataccttgccagctgct
gagacccccttggccttagagccctcctcaggccctgtgcgggctaagcccactgcacgg
ggggaggcagggagtcgggatgaacgtcgggccttggccatgaagattccttttcctacg
gacaagattgtcaacttgccggtagatgactttaatgagctattggcaaggtacccgctg
acagagagccagctagcgctagtccgggacatccgacgacggggcaaaaacaaggtggca
gcccagaactgccgcaagaggaagctggaaaccattgtgcagctggagcgggagctggag
cggctgaccaatgaacgggagcggcttctcagggcccgcggggaggcagaccggaccctg
gaggtcatgcgccaacagctgacagagctgtaccgtgacattttccagcaccttcgggat
gaatcaggcaacagctactctcctgaagagtacgcgctgcaacaggctgccgatgggacc
atcttccttgtgccccgggggaccaagatggaggccacagactga

>gi568815586r:54141758_54357650|GENSCAN_predicted_peptide_7|219_aa
MTRSRLTSTSASQVQAGPNGNVWPISGGVSFAAPRRHQLRGKMEALILEPSLYTVKAILI
LDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFY
VIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESD
PQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR

>gi568815586r:54141758_54357650|GENSCAN_predicted_CDS_7|660_bp
atgacgagatctcgcctcacctcaacctccgcctcccaggttcaagcggggcctaatggg
aacgtatggccaatcagcggcggcgtttcttttgcggctccacgtcggcaccagctgcgg
ggcaagatggaggcgctgattttggaaccttccctgtatactgtcaaagccatcctgatt
ctggacaatgatggagatcgactttttgccaagtactatgacgacacctaccccagtgtc
aaggagcaaaaggcctttgagaagaacattttcaacaagacccatcggactgacagtgaa
attgccctcttggaaggcctgacagtggtatacaaaagcagtatagatctctatttctat
gtgattggcagctcctatgaaaatgagctgatgcttatggctgttctgaactgtctcttc
gactcattgagccagatgctgaggaaaaatgtagaaaagcgagcactgctggagaacatg
gaggggctgttcttggctgtggatgaaattgtagatggaggggtgatcctagagagtgat
ccccagcaggtggtacaccgggtggcattaaggggtgaagatgtcccccttacggagcag
accgtgtctcaggtgctgcagtcagccaaagaacagatcaagtggtcactccttcggtga