GENSCAN 1.0	Date run:  4-Nov-116	Time: 22:06:02

Sequence gi568815587r:122957737_123161324 : 203588 bp : 44.30% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   9788  10120  333  1  0   55   47   140 0.805   2.62
 1.02 PlyA +  10492  10497    6                               1.05

 2.05 PlyA -  10611  10606    6                               1.05
 2.04 Term -  20155  19913  243  1  0   68   52   361 0.981  26.40
 2.03 Intr -  21721  21525  197  2  2  118   80   296 0.999  30.93
 2.02 Intr -  23949  23674  276  1  0   99  114   237 0.420  24.89
 2.01 Init -  32082  31872  211  0  1  102   -7   509 0.111  41.75
 2.00 Prom -  32540  32501   40                              -2.86

 3.00 Prom +  37858  37897   40                              -1.56
 3.01 Init +  56008  56085   78  0  0   59   78    55 0.366   2.66
 3.02 Intr +  60018  60287  270  2  0   48   15   235 0.301   9.94
 3.03 Term +  60326  60928  603  1  0  -11   46   482 0.464  28.62
 3.04 PlyA +  61854  61859    6                               1.05

 4.00 Prom +  86434  86473   40                              -3.96
 4.01 Sngl +  93475  93741  267  0  0   21   53   192 0.654   4.24
 4.02 PlyA +  93762  93767    6                               1.05

 5.10 PlyA -  94276  94271    6                               1.05
 5.09 Term -  95761  95655  107  2  2  130   47    82 0.836   6.87
 5.08 Intr - 100183 100057  127  1  1   96   -6   126 0.055   4.25
 5.07 Intr - 100748 100516  233  0  2   69   72   389 0.999  32.89
 5.06 Intr - 101094 100896  199  0  1   47   86   247 0.991  19.32
 5.05 Intr - 101525 101323  203  0  2   87   91   194 0.998  18.60
 5.04 Intr - 102292 101737  556  1  1   57   92   774 0.967  67.12
 5.03 Intr - 102532 102380  153  1  0   86   95   131 0.999  13.87
 5.02 Intr - 103062 102857  206  1  2   56  100   185 0.998  15.42
 5.01 Init - 103588 103384  205  1  1   94   97   197 0.848  20.21
 5.00 Prom - 104436 104397   40                              -4.16

 6.00 Prom + 108588 108627   40                              -1.76
 6.01 Init + 111729 111736    8  2  2   72   89     7 0.771  -0.81
 6.02 Term + 115858 116065  208  1  1   67   41   210 0.884  11.01
 6.03 PlyA + 116789 116794    6                               1.05

 7.10 PlyA - 118590 118585    6                               1.05
 7.09 Term - 122205 122134   72  0  0   48   32   104 0.197  -1.29
 7.08 Intr - 125471 125368  104  0  2   67   42    93 0.197   2.49
 7.07 Intr - 126111 125944  168  1  0   65  111   147 0.978  14.62
 7.06 Intr - 126977 126776  202  2  1  112   82   191 0.980  19.76
 7.05 Intr - 140216 140059  158  0  2   48  103   115 0.842   8.73
 7.04 Intr - 178390 178225  166  1  1   46   33   184 0.097   8.23
 7.03 Intr - 182517 182366  152  1  2   69  -12   128 0.014   0.78
 7.02 Intr - 195194 195067  128  1  2  111   25    63 0.002   2.62
 7.01 Intr - 201092 200993  100  0  1   53   62    67 0.010  -0.23

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  32082  31858  225  0  0  102   53   503 0.887  43.34
S.002 Init - 144398 144365   34  2  1  101   58    10 0.870  -0.63
S.003 Term - 178390 178184  207  1  0   46   49   176 0.821   6.84


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:122957737_123161324|GENSCAN_predicted_peptide_1|110_aa
MNGDVGQGELMKGNCMKVSFRAVTPVNPFLNSHAAKHSPCTATVKDTALVSLESGTIGSI
EDAQYVLKKESIVNMCTVNTETSGLPFASQNVGTLSYKQEFGRKVLLWGI

>gi568815587r:122957737_123161324|GENSCAN_predicted_CDS_1|333_bp
atgaatggagacgtggggcagggggagctaatgaagggtaactgcatgaaagtcagtttc
agagcagttacacctgtaaatcctttcctcaattcccatgcagccaagcacagcccttgc
actgccacagtaaaagacactgccctagtgtctttggagtcagggacaattggttctatt
gaggatgcacagtacgtgctgaaaaaagagtcaatagtgaacatgtgtactgtaaacaca
gaaacctctggtcttccatttgcctcccagaacgttgggactttatcctacaagcaggaa
tttggaaggaaagttcttctctggggaatctga

>gi568815587r:122957737_123161324|GENSCAN_predicted_peptide_2|308_aa
MAKTITTTIITTTTITITTTNTTITTTTITTTTTITITTTTIITTTTTTTTTTIITTTII
TSSSSSNNSSGAPLKMNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSL
ASRVPLLDYGYPLMPTPTLLAPHAHHPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPG
KHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKH
KKQLRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLPAGPFVLTEPEDEVDIGDEGE
LGSGPHVL

>gi568815587r:122957737_123161324|GENSCAN_predicted_CDS_2|927_bp
atggccaaaaccatcaccactactatcatcaccacaaccaccatcaccatcaccaccacc
aacaccaccatcaccaccaccaccatcaccaccaccaccaccatcaccatcaccaccacc
accatcatcaccaccaccaccactaccaccactactaccatcatcaccaccactatcatc
accagcagcagcagcagcaacaacagcagtggtgctccgctcaagatgaatctcaacttc
acctctcctctacacccggcgtcttctcagaggcccacatccttcttcatcgaggacatc
ctgctgcacaagcccaagccgctgagagaggtggccccagaccatttcgccagctctctg
gcctctcgggtgcctctgctagactatggctaccccctcatgcccacacccaccctcttg
gctcctcacgcccatcaccctctgcataagggagaccaccatcatccttatttcctcacc
acctcggggatgccagtcccagcgctgttcccgcacccgcagcacgcggagctgccgggg
aagcactgccgccgccgcaaagcccgcacggttttctctgactcgcagctctcgggcttg
gagaagaggttcgagatccagcgctacctgtccacgccagaacgagtggagctggccacg
gccctcagcctgtccgagacgcaggtgaaaacgtggttccagaaccggcggatgaagcat
aaaaagcaactgcggaaaagccaagacgaacccaaagcaccagacgggccagaaagcccc
gagggcagcccccgcggttcagaggccgccaccgccgccgaggctcggctgagcctgccc
gccggtcccttcgtgctgaccgagccagaggacgaggtggacattggagacgagggggag
ctgggctcagggccgcacgtgctctga

>gi568815587r:122957737_123161324|GENSCAN_predicted_peptide_3|316_aa
MTYQRLCQEDDWFKAILPQKLPPNLEVLLAGMKGLGAEIAKNLILAGVKGLTMLDHKQIS
PEEPGAQFLIRIGSVGRNRAEASLERAQNLNPMVDVKLDTEDIEKKPESFFTQFDAVDQI
CHKNSIKFFAGDVFSYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRVKLDSSETT
MVKKKVVFCPVKEALEVDWSSKKAKAALKRTTSDHFLLQVLLKFRTDKGRDPSSDTHGED
SELLLQIRNDVLDSLGIIPDPRFITYFFSEMAPVCAVVGGILAQEIVKALSQQDPPHNFF
FNGMKGNGILEWLGPK

>gi568815587r:122957737_123161324|GENSCAN_predicted_CDS_3|951_bp
atgacttaccagaggctttgccaagaagatgactggtttaaagcaatcctaccacagaag
ctgccacccaacctggaggtgcttcttgcaggcatgaaaggactcggggctgaaattgcc
aagaatctcatcctggcaggagtgaaaggactgaccatgctggatcacaaacagatatct
ccagaagaacccggagctcagttcttgattcgtattgggtctgttggccgaaatagggct
gaagcctctttggagcgagctcagaatcttaaccccatggtggatgtgaagttggacact
gaggatatagagaagaaaccagagtcatttttcactcaatttgatgctgttgaccagatc
tgtcacaaaaatagcatcaagttctttgcaggagatgtttttagctaccatggatacaca
tttgccaatctaggagaacatgagtttgtagaggagaaaactaaagttgctaaagttagc
caaggagtagaagatgggcctgataccaagagagtaaaacttgattcttctgagacaacg
atggtcaagaagaaggtggtcttctgccccgttaaagaagcgctggaggtggactggagc
agtaagaaagcaaaggctgctctgaagcgcacgacctccgaccactttctccttcaagtg
ctcctaaagttccgcacagataaaggaagagatcccagttctgatacacacggggaagat
tccgagttgttgctccagatacgaaacgatgtgcttgactcactgggtattattcctgac
ccgcgctttatcacgtacttcttctctgagatggccccagtgtgtgcggtggttggaggg
attttggcacaggaaattgtgaaggccctgtctcagcaggaccctcctcacaacttcttc
ttcaatggcatgaaggggaatgggattctggagtggcttggccccaagtga

>gi568815587r:122957737_123161324|GENSCAN_predicted_peptide_4|88_aa
MRTREVGFKKGAPWALREIRKLAMEMRTPDVHIDIRLNKTVWAKGIRNVPYYIHIHVHRK
HEDEDSPKTALYLCTCYHFQKCIDRQHG

>gi568815587r:122957737_123161324|GENSCAN_predicted_CDS_4|267_bp
atgcgtacccgtgaagtgggcttcaaaaagggtgccccttgggcactcagagagatccgg
aaattggccatggagatgcggactccagatgtacacattgatatcaggcttaacaaaact
gtctgggccaaaggaataaggaatgtcccatactatatccatatccatgtgcacagaaaa
catgaggatgaagattcaccaaaaacagcgctgtacctatgtacctgttaccactttcaa
aaatgtatagaccgtcaacatggatga

>gi568815587r:122957737_123161324|GENSCAN_predicted_peptide_5|662_aa
MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA
MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS
SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA
IAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH
FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRA
RFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELN
KSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTI
PTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDI
DANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKN
SLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELE
KVCNPIITKLYQSAGGMPGGMPGGFPGGWGANIRVACDEKKVIKPGADLGKGKLAITELP
RS

>gi568815587r:122957737_123161324|GENSCAN_predicted_CDS_5|1989_bp
atgtccaagggacctgcagttggtattgatcttggcaccacctactcttgtgtgggtgtt
ttccagcacggaaaagtcgagataattgccaatgatcagggaaaccgaaccactccaagc
tatgtcgcctttacggacactgaacggttgatcggtgatgccgcaaagaatcaagttgca
atgaaccccaccaacacagtttttgatgccaaacgtctgattggacgcagatttgatgat
gctgttgtccagtctgatatgaaacattggccctttatggtggtgaatgatgctggcagg
cccaaggtccaagtagaatacaagggagagaccaaaagcttctatccagaggaggtgtct
tctatggttctgacaaagatgaaggaaattgcagaagcctaccttgggaagactgttacc
aatgctgtggtcacagtgccagcttactttaatgactctcagcgtcaggctaccaaagat
gctggaactattgctggtctcaatgtacttagaattattaatgagccaactgctgctgct
attgcttacggcttagacaaaaaggttggagcagaaagaaacgtgctcatctttgacctg
ggaggtggcacttttgatgtgtcaatcctcactattgaggatggaatctttgaggtcaag
tctacagctggagacacccacttgggtggagaagattttgacaaccgaatggtcaaccat
tttattgctgagtttaagcgcaagcataagaaggacatcagtgagaacaagagagctgta
agacgcctccgtactgcttgtgaacgtgctaagcgtaccctctcttccagcacccaggcc
agtattgagatcgattctctctatgaaggaatcgacttctatacctccattacccgtgcc
cgatttgaagaactgaatgctgacctgttccgtggcaccctggacccagtagagaaagcc
cttcgagatgccaaactagacaagtcacagattcatgatattgtcctggttggtggttct
actcgtatccccaagattcagaagcttctccaagacttcttcaatggaaaagaactgaat
aagagcatcaaccctgatgaagctgttgcttatggtgcagctgtccaggcagccatcttg
tctggagacaagtctgagaatgttcaagatttgctgctcttggatgtcactcctctttcc
cttggtattgaaactgctggtggagtcatgactgtcctcatcaagcgtaataccaccatt
cctaccaagcagacacagaccttcactacctattctgacaaccagcctggtgtgcttatt
caggtttatgaaggcgagcgtgccatgacaaaggataacaacctgcttggcaagtttgaa
ctcacaggcatacctcctgcaccccgaggtgttcctcagattgaagtcacttttgacatt
gatgccaatggtatactcaatgtctctgctgtggacaagagtacgggaaaagagaacaag
attactatcactaatgacaagggccgtttgagcaaggaagacattgaacgtatggtccag
gaagctgagaagtacaaagctgaagatgagaagcagagggacaaggtgtcatccaagaat
tcacttgagtcctatgccttcaacatgaaagcaactgttgaagatgagaaacttcaaggc
aagattaacgatgaggacaaacagaagattctggacaagtgtaatgaaattatcaactgg
cttgataagaatcagactgctgagaaggaagaatttgaacatcaacagaaagagctggag
aaagtttgcaaccccatcatcaccaagctgtaccagagtgcaggaggcatgccaggagga
atgcctgggggatttcctggtgggtggggagccaacattagagttgcatgtgatgagaag
aaagtgatcaaacctggagcagatttgggtaaaggaaagttggcaataacagaattgcca
agatcttga

>gi568815587r:122957737_123161324|GENSCAN_predicted_peptide_6|71_aa
MAQLYAWVASPGWGAASVDSVRWLREALFAVERVEEEPERELREPEEEELGFTRRAFGAS
ASSLKRKNSKD

>gi568815587r:122957737_123161324|GENSCAN_predicted_CDS_6|216_bp
atggctcagctgtatgcctgggtggccagccctggctggggtgctgcgtcagttgacagt
gtccgctggctgcgtgaggcactatttgctgtggagcgagtggaggaagaaccagagcgt
gagctccgagagcctgaggaagaggagctgggtttcacaagacgggcttttggagcttca
gcatcttctctgaagagaaaaaacagcaaagattaa

>gi568815587r:122957737_123161324|GENSCAN_predicted_peptide_7|416_aa
XPPFVNENNLGLTGVKKLAQVQQPGSDKSDFKPRYYAHNLYAQDPSPGPPEYVWDIYDIN
GKGYRGQCGHKGKKWQVTLVLFSPDLLSDPDNYALANPINTASHIKPEWYFLFAYATLRS
IPNKLGGIASHSGYVQINWKRVEKDSNKAKRQMKKRANKAAPEINNLIEEAIEFIKQHIV
IPVSYYVGTLGTHTEIKRVAEEKVTLPCHHQLGLPEKDTLDIEWLLTDNEGNQKVVITYS
SRHVYNNLTEEQKGRVAFASNFLAGDASLQIEPLKPSDEGRYTCKVKNSGRYVWSHVILK
VLVRPSKPKCELEGELTEGSDLTLQCESSSGTEPIVYYWQRIREKEGEDERLPPKSRIDY
NHPGRVLLQNLTMSYSGLYQCTAGNEAGKESCVIAGFDIELRSRRLIPGVICLTGG

>gi568815587r:122957737_123161324|GENSCAN_predicted_CDS_7|1251_bp
ncaccaccctttgtaaatgaaaacaacctggggctcacaggggtgaagaaacttgcccaa
gttcaacagccaggaagtgacaaatcagatttcaaacccagatattacgcacacaacctc
tatgctcaagatccttcaccaggccctcctgagtatgtttgggacatatatgatataaat
gggaaaggatacagggggcaatgtggacacaaagggaaaaagtggcaagtaaccctagta
ctattttcacctgacctcctgagcgacccagataactacgctttagccaaccccatcaac
accgcatcccacattaagccagagtggtacttcctgtttgcctatgcaactttacgatcc
atccctaacaaactaggaggcattgctagtcatagtggctacgtgcagattaactggaag
agagttgaaaaagattcaaacaaagcaaaaaggcagatgaagaaacgagcgaacaaagca
gcaccggaaatcaacaatttaattgaagaagcaatagaatttatcaagcagcacattgtg
atacccgtttcctactatgttggaaccttggggactcacactgagatcaagagagtggca
gaggaaaaggtcactttgccctgccaccatcaactggggcttccagaaaaagacactctg
gatattgaatggctgctcaccgataatgaagggaaccaaaaagtggtgatcacttactcc
agtcgtcatgtctacaataacttgactgaggaacagaagggccgagtggcctttgcttcc
aatttcctggcaggagatgcctccttgcagattgaacctctgaagcccagtgatgagggc
cggtacacctgtaaggttaagaattcagggcgctacgtgtggagccatgtcatcttaaaa
gtcttagtgagaccatccaagcccaagtgtgagttggaaggagagctgacagaaggaagt
gacctgactttgcagtgtgagtcatcctctggcacagagcccattgtgtattactggcag
cgaatccgagagaaagagggagaggatgaacgtctgcctcccaaatctaggattgactac
aaccaccctggacgagttctgctgcagaatcttaccatgtcctactctggactgtaccag
tgcacagcaggcaacgaagctgggaaggaaagctgtgtgattgctggatttgacatcgag
ctacgaagtcgcagactaattcctggggtcatctgtttaactggtggataa