Result of FASTA (ccds) for pF1KF0040
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0040, 1050 aa
  1>>>pF1KF0040 1050 - 1050 aa - 1050 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1642+/-0.00126; mu= 12.7688+/- 0.075
 mean_var=137.2796+/-28.811, 0's: 0 Z-trim(105.4): 266  B-trim: 15 in 1/50
 Lambda= 0.109464
 statistics sampled from 8110 (8418) to 8110 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.259), width:  16
 Scan time:  3.660

The best scores are:                                      opt bits E(32554)
CCDS32986.1 ANKRD27 gene_id:84079|Hs108|chr19      (1050) 6957 1111.6       0
CCDS6746.1 INVS gene_id:27130|Hs108|chr9           (1065)  367 70.9 1.6e-11


>>CCDS32986.1 ANKRD27 gene_id:84079|Hs108|chr19           (1050 aa)
 initn: 6957 init1: 6957 opt: 6957  Z-score: 5944.8  bits: 1111.6 E(32554):    0
Smith-Waterman score: 6957; 99.8% identity (99.9% similar) in 1050 aa overlap (1-1050:1-1050)

               10        20        30        40        50        60
pF1KF0 MALYDEDLLKNPFYLALQKCRPDLCSKVAQIHGIVLVPCKGSLSSSIQSTCQFESYILIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MALYDEDLLKNPFYLALQKCRPDLCSKVAQIHGIVLVPCKGSLSSSIQSTCQFESYILIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 VEEHFQTLNGKDVFIQGNRIKLGAGFACLLSVPILFEETFYNEKEESFSILCIAHPLEKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VEEHFQTLNGKDVFIQGNRIKLGAGFACLLSVPILFEETFYNEKEESFSILCIAHPLEKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 ESSEEPLAPSDPFSLKTIEDVREFLGRHSERFDRNIASFHRTFRECERKSLRHHIDSANA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ESSEEPLAPSDPFSLKTIEDVREFLGRHSERFDRNIASFHRTFRECERKSLRHHIDSANA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 LYTKCLQQLLRDSHLKMLAKQEAQMNLMKQAVEIYVHHEIYNLIFKYVGTMEASEDAAFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LYTKCLQQLLRDSHLKMLAKQEAQMNLMKQAVEIYVHHEIYNLIFKYVGTMEASEDAAFN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KF0 KITRSLQDLQQKDIGVKPEFSFNIPRAKRELAQLNKCTSPQQKLVCLRKVVQLITQSPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KITRSLQDLQQKDIGVKPEFSFNIPRAKRELAQLNKCTSPQQKLVCLRKVVQLITQSPSQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KF0 RVNLETMCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFSSLAKDELGYCLTSFEAAIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RVNLETMCADDLLSVLLYLLVKTEIPNWMANLSYIKNFRFSSLAKDELGYCLTSFEAAIE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KF0 YIRQGSLSAKPPESEGFGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGNQKEVERLLSQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YIRQGSLSAKPPESEGFGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGNQKEVERLLSQE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KF0 DHDKDTVQKMCHPLCFCDDCEKLVSGRLNDPSVVTPFSRDDRGHTPLHVAAVCGQASLID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DHDKDTVQKMCHPLCFCDDCEKLVSGRLNDPSVVTPFSRDDRGHTPLHVAAVCGQASLID
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KF0 LLVSKGAMVNATDYHGATPLHLACQKGYQSVTLLLLHYKASAEVQDNNGNTPLHLACTYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLVSKGAMVNATDYHGATPLHLACQKGYQSVTLLLLHYKASAEVQDNNGNTPLHLACTYG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KF0 HEDCVKALVYYDVESCRLDIGNEKGDTPLHIAARWGYQGVIETLLQNGASTEIQNRLKET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HEDCVKALVYYDVESCRLDIGNEKGDTPLHIAARWGYQGVIETLLQNGASTEIQNRLKET
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KF0 PLKCALNSKILSVMEAYHLSFERRQKSSEAPVQSPQRSVDSISQESSTSSFSSMSAGSRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS32 PLKCALNSKILSVMEAYHLSFERRQKSSEAPVQSPQRSVDSISQESSTSSFSSMSASSRQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KF0 EETKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EETKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKC
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KF0 APAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIRLLLKHGANAGARNADQAVP
       :::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS32 APAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KF0 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KF0 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KF0 ASLDDVAETDRKEYVTVKIRKKWNSKLYDLPDEPFTRQFYFVHSAGQFKGKTSREIMARD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ASLDDVAETDRKEYVTVKIRKKWNSKLYDLPDEPFTRQFYFVHSAGQFKGKTSREIMARD
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KF0 RSVPNLTEGSLHEPGRQSVTLRQNNLPAQSGSHAAEKGNSDWPERPGLTQTGPGHRRMLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RSVPNLTEGSLHEPGRQSVTLRQNNLPAQSGSHAAEKGNSDWPERPGLTQTGPGHRRMLR
              970       980       990      1000      1010      1020

             1030      1040      1050
pF1KF0 RHTVEDAVVSQGPEAAGPLSTPQEVSASRS
       ::::::::::::::::::::::::::::::
CCDS32 RHTVEDAVVSQGPEAAGPLSTPQEVSASRS
             1030      1040      1050

>>CCDS6746.1 INVS gene_id:27130|Hs108|chr9                (1065 aa)
 initn: 393 init1: 223 opt: 367  Z-score: 320.3  bits: 70.9 E(32554): 1.6e-11
Smith-Waterman score: 427; 24.9% identity (54.1% similar) in 651 aa overlap (407-1014:24-663)

        380       390       400       410       420       430      
pF1KF0 FGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGNQKEVERLLSQEDHDKDTVQKMCH-PLC
                                     .:..  ..::.  ..  ::  ... . :: 
CCDS67        MNKSENLLFAGSSLASQVHAAAVNGDKGALQRLIVGNSALKDKEDQFGRTPLM
                      10        20        30        40        50   

         440         450       460       470       480       490   
pF1KF0 FCDDCEKL--VSGRLNDPSVVTPFSRDDRGHTPLHVAAVCGQASLIDLLVSKGAMVNATD
       .:   ..:  ... :.  . :.  ....:  : ::.::  :.  .. ::... :     :
CCDS67 YCVLADRLDCADALLKAGADVNKTDHSQR--TALHLAAQKGNYRFMKLLLTRRANWMQKD
            60        70        80          90       100       110 

           500       510       520         530       540       550 
pF1KF0 YHGATPLHLACQKGYQSVTLLLLHYKASAEV--QDNNGNTPLHLACTYGHEDCVKALVYY
        .  :::::. ..   .   :::.. : .::  ::.: .: :: .  :.. . :: :. .
CCDS67 LEEMTPLHLTTRHRSPKCLALLLKFMAPGEVDTQDKNKQTALHWSAYYNNPEHVKLLIKH
             120       130       140       150       160       170 

             560       570       580         590           600     
pF1KF0 DVESCRLDIGNEKGDTPLHIAARWGYQGVIETL--LQNGASTEI----QNRLKETPLKCA
       : .   . : . .:  ::: ::     ....:.  . ..: ::     :.   .:::. :
CCDS67 DSN---IGIPDVEGKIPLHWAANHKDPSAVHTVRCILDAAPTESLLNWQDYEGRTPLHFA
                180       190       200       210       220        

            610           620         630       640       650      
pF1KF0 L---NSKILSVMEAYH----LSFER--RQKSSEAPVQSPQRSVDSISQESSTSSFSSMSA
       .   :  ...:. .:.     :..   :     : . .  . :  . ........ : : 
CCDS67 VADGNVTVVDVLTSYESCNITSYDNLFRTPLHWAALLGHAQIVHLLLERNKSGTIPSDSQ
      230       240       250       260       270       280        

          660       670           680       690            700     
pF1KF0 GSR--QEETKKDYREVEKLL----RAVADGDLEMVRYLLEW-----TEEDLEDAEDTVSA
       :.   .  ..... :. :..     .  :.:::  :  . :     ... :.   .  : 
CCDS67 GATPLHYAAQSNFAETVKVFLKHPSVKDDSDLEG-RTSFMWAAGKGSDDVLRTMLSLKSD
      290       300       310       320        330       340       

         710       720        730          740       750       760 
pF1KF0 ADPEFCHPLCQCPKCAPAQK-RLAKVP---ASGLGVNVTSQDGSSPLHVAALHGRADLIR
        : ..          : : . ... :     ..  :..:.    .::  :   :. :.:.
CCDS67 IDINMADKYGGTALHAAALSGHVSTVKLLLENNAQVDATDVMKHTPLFRACEMGHKDVIQ
       350       360       370       380       390       400       

             770       780       790       800       810       820 
pF1KF0 LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG
        :.: :: .   . :    :: :   :. .: . :.... .:: .: .: :::  :  ::
CCDS67 TLIKGGARVDLVDQDGHSLLHWAALGGNADVCQILIENKINPNVQDYAGRTPLQCAAYGG
       410       420       430       440       450       460       

             830       840       850       860        870          
pF1KF0 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA-SVQVLNKRQR-TA
       . . .:.:....:. : ....: :::: .  . .. ...:::  .:   :. :...: : 
CCDS67 YINCMAVLMENNADPNIQDKEGRTALHWSCNNGYLDAIKLLLDFAAFPNQMENNEERYTP
       470       480       490       500       510       520       

     880          890       900       910        920        930    
pF1KF0 VDCA---EQNSKIMELLQVVPSCVASLDDVAETDRKE-YVTVKIRKKW-NSKLYDLPDEP
       .: :   :..  :. .:.     .:...:.:    .  :   :.:: . . :   .  : 
CCDS67 LDYALLGERHEVIQFMLEHGALSIAAIQDIAAFKIQAVYKGYKVRKAFRDRKNLLMKHEQ
       530       540       550       560       570       580       

          940       950       960       970        980       990   
pF1KF0 FTRQFYFVHSAGQFKGKTSREIMARDRSVPNLTEGSLHE-PGRQSVTLRQNNLPAQSGSH
       . ..    .   . : : ...  .: ::  .    .:   :. :.:  ::.  :    :.
CCDS67 LRKDAAAKKREEENKRKEAEQQKGR-RSPDSCRPQALPCLPSTQDVPSRQSRAP----SK
       590       600       610        620       630       640      

          1000      1010      1020      1030      1040      1050   
pF1KF0 AAEKGNSDWPERPGLTQTGPGHRRMLRRHTVEDAVVSQGPEAAGPLSTPQEVSASRS   
           ::     .:  .. .::                                       
CCDS67 QPPAGNVAQGPEPRDSRGSPGGSLGGALQKEQHVSSDLQGTNSRRPNETAREHSKGQSAC
            650       660       670       680       690       700  




1050 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:32:47 2016 done: Sat Nov  5 20:32:48 2016
 Total Scan time:  3.660 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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