Result of FASTA (ccds) for pF1KB4033
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4033, 1262 aa
  1>>>pF1KB4033 1262 - 1262 aa - 1262 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4423+/-0.00123; mu= 21.6383+/- 0.074
 mean_var=62.6507+/-12.486, 0's: 0 Z-trim(99.6): 36  B-trim: 18 in 1/49
 Lambda= 0.162036
 statistics sampled from 5770 (5788) to 5770 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.528), E-opt: 0.2 (0.178), width:  16
 Scan time:  4.890

The best scores are:                                      opt bits E(32554)
CCDS6694.1 IARS gene_id:3376|Hs108|chr9            (1262) 8407 1975.1       0
CCDS1523.1 IARS2 gene_id:55699|Hs108|chr1          (1012) 1050 255.2 6.2e-67


>>CCDS6694.1 IARS gene_id:3376|Hs108|chr9                 (1262 aa)
 initn: 8407 init1: 8407 opt: 8407  Z-score: 10608.3  bits: 1975.1 E(32554):    0
Smith-Waterman score: 8407; 100.0% identity (100.0% similar) in 1262 aa overlap (1-1262:1-1262)

               10        20        30        40        50        60
pF1KB4 MLQQVPENINFPAEEEKILEFWTEFNCFQECLKQSKHKPKFTFYDGPPFATGLPHYGHIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MLQQVPENINFPAEEEKILEFWTEFNCFQECLKQSKHKPKFTFYDGPPFATGLPHYGHIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AGTIKDIVTRYAHQSGFHVDRRFGWDCHGLPVEYEIDKTLGIRGPEDVAKMGITEYNNQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AGTIKDIVTRYAHQSGFHVDRRFGWDCHGLPVEYEIDKTLGIRGPEDVAKMGITEYNNQC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 RAIVMRYSAEWKSTVSRLGRWIDFDNDYKTLYPQFMESVWWVFKQLYDKGLVYRGVKVMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RAIVMRYSAEWKSTVSRLGRWIDFDNDYKTLYPQFMESVWWVFKQLYDKGLVYRGVKVMP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 FSTACNTPLSNFESHQNYKDVQDPSVFVTFPLEEDETVSLVAWTTTPWTLPSNLAVCVNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FSTACNTPLSNFESHQNYKDVQDPSVFVTFPLEEDETVSLVAWTTTPWTLPSNLAVCVNP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 EMQYVKIKDVARGRLLILMEARLSALYKLESDYEILERFPGAYLKGKKYRPLFDYFLKCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EMQYVKIKDVARGRLLILMEARLSALYKLESDYEILERFPGAYLKGKKYRPLFDYFLKCK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 ENGAFTVLVDNYVKEEEGTGVVHQAPYFGAEDYRVCMDFNIIRKDSLPVCPVDASGCFTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ENGAFTVLVDNYVKEEEGTGVVHQAPYFGAEDYRVCMDFNIIRKDSLPVCPVDASGCFTT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 EVTDFAGQYVKDADKSIIRTLKEQGRLLVATTFTHSYPFCWRSDTPLIYKAVPSWFVRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EVTDFAGQYVKDADKSIIRTLKEQGRLLVATTFTHSYPFCWRSDTPLIYKAVPSWFVRVE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 NMVDQLLRNNDLCYWVPELVREKRFGNWLKDARDWTISRNRYWGTPIPLWVSDDFEEVVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NMVDQLLRNNDLCYWVPELVREKRFGNWLKDARDWTISRNRYWGTPIPLWVSDDFEEVVC
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 IGSVAELEELSGAKISDLHRESVDHLTIPSRCGKGSLHRISEVFDCWFESGSMPYAQVHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IGSVAELEELSGAKISDLHRESVDHLTIPSRCGKGSLHRISEVFDCWFESGSMPYAQVHY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 PFENKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFKNVIVNGLVLASDGQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PFENKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFKNVIVNGLVLASDGQK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 MSKRKKNYPDPVSIIQKYGADALRLYLINSPVVRAENLRFKEEGVRDVLKDVLLPWYNAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MSKRKKNYPDPVSIIQKYGADALRLYLINSPVVRAENLRFKEEGVRDVLKDVLLPWYNAY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 RFLIQNVLRLQKEEEIEFLYNENTVRESPNITDRWILSFMQSLIGFFETEMAAYRLYTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RFLIQNVLRLQKEEEIEFLYNENTVRESPNITDRWILSFMQSLIGFFETEMAAYRLYTVV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB4 PRLVKFVDILTNWYVRMNRRRLKGENGMEDCVMALETLFSVLLSLCRLMAPYTPFLTELM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PRLVKFVDILTNWYVRMNRRRLKGENGMEDCVMALETLFSVLLSLCRLMAPYTPFLTELM
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB4 YQNLKVLIDPVSVQDKDTLSIHYLMLPRVREELIDKKTESAVSQMQSVIELGRVIRDRKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YQNLKVLIDPVSVQDKDTLSIHYLMLPRVREELIDKKTESAVSQMQSVIELGRVIRDRKT
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB4 IPIKYPLKEIVVIHQDPEALKDIKSLEKYIIEELNVRKVTLSTDKNKYGIRLRAEPDHMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IPIKYPLKEIVVIHQDPEALKDIKSLEKYIIEELNVRKVTLSTDKNKYGIRLRAEPDHMV
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB4 LGKRLKGAFKAVMTSIKQLSSEELEQFQKTGTIVVEGHELHDEDIRLMYTFDQATGGTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LGKRLKGAFKAVMTSIKQLSSEELEQFQKTGTIVVEGHELHDEDIRLMYTFDQATGGTAQ
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB4 FEAHSDAQALVLLDVTPDQSMVDEGMAREVINRIQKLRKKCNLVPTDEITVYYKAKSEGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FEAHSDAQALVLLDVTPDQSMVDEGMAREVINRIQKLRKKCNLVPTDEITVYYKAKSEGT
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB4 YLNSVIESHTEFIFTTIKAPLKPYPVSPSDKVLIQEKTQLKGSELEITLTRGSSLPGPAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YLNSVIESHTEFIFTTIKAPLKPYPVSPSDKVLIQEKTQLKGSELEITLTRGSSLPGPAC
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB4 AYVNLNICANGSEQGGVLLLENPKGDNRLDLLKLKSVVTSIFGVKNTELAVFHDETEIQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AYVNLNICANGSEQGGVLLLENPKGDNRLDLLKLKSVVTSIFGVKNTELAVFHDETEIQN
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KB4 QTDLLSLSGKTLCVTAGSAPSLINSSSTLLCQYINLQLLNAKPQECLMGTVGTLLLENPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QTDLLSLSGKTLCVTAGSAPSLINSSSTLLCQYINLQLLNAKPQECLMGTVGTLLLENPL
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KB4 GQNGLTHQGLLYEAAKVFGLRSRKLKLFLNETQTQEITEDIPVKTLNMKTVYVSVLPTTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GQNGLTHQGLLYEAAKVFGLRSRKLKLFLNETQTQEITEDIPVKTLNMKTVYVSVLPTTA
             1210      1220      1230      1240      1250      1260

         
pF1KB4 DF
       ::
CCDS66 DF
         

>>CCDS1523.1 IARS2 gene_id:55699|Hs108|chr1               (1012 aa)
 initn: 764 init1: 235 opt: 1050  Z-score: 1315.1  bits: 255.2 E(32554): 6.2e-67
Smith-Waterman score: 1052; 29.1% identity (54.7% similar) in 919 aa overlap (1-858:65-923)

                                             10        20          
pF1KB4                               MLQQVPENINFPAEEEKILEFWTEFNC-FQ
                                     .: :.   ... ....   :.  . .: :.
CCDS15 GATKRLLVRSVSGASNHQPNSNSGRYRDTVLLPQTSFPMKLLGRQQPDTELEIQQKCGFS
           40        50        60        70        80        90    

      30           40        50        60        70        80      
pF1KB4 ECL---KQSKHKPKFTFYDGPPFATGLPHYGHILAGTIKDIVTRYAHQSGFHVDRRFGWD
       :     .. : : .: ..::::.:.: :: :: :   .:::..:.  ..: ..    :::
CCDS15 ELYSWQRERKVKTEFCLHDGPPYANGDPHVGHALNKILKDIANRFHMMNGSKIHFVPGWD
          100       110       120       130       140       150    

         90       100       110       120       130       140      
pF1KB4 CHGLPVEYEIDKTLGIRGPEDVAKMGITEYNNQCRAIVMRYSAEWKSTVSRLGRWIDFDN
       :::::.: .. . :: :  .... :   :  .. :...     . ::.  : :   :..:
CCDS15 CHGLPIEIKVLSELG-REAQNLSAM---EIRKKARSFAKAAIEKQKSAFIRWGIMADWNN
          160        170          180       190       200       210

        150       160       170       180       190       200      
pF1KB4 DYKTLYPQFMESVWWVFKQLYDKGLVYRGVKVMPFSTACNTPLSNFESHQNYKDVQDPSV
        : :.  ..  .   .: :.::::::::. : . .: .  : :.. : . : . :.  :.
CCDS15 CYYTFDGKYEAKQLRTFYQMYDKGLVYRSYKPVFWSPSSRTALAEAELEYNPEHVSR-SI
              220       230       240       250       260          

        210                  220       230       240       250     
pF1KB4 FVTFPL-----------EEDETVSLVAWTTTPWTLPSNLAVCVNPEMQYVKIKDVARGRL
       .: :::           . .  ::...::: :::.:.: :::  :: .:. .:    : :
CCDS15 YVKFPLLKPSPKLASLIDGSSPVSILVWTTQPWTIPANEAVCYMPESKYAVVKCSKSGDL
     270       280       290       300       310       320         

         260        270       280        290       300       310   
pF1KB4 LILMEARLSALYK-LESDYEILERFPGAYLK-GKKYRPLFDYFLKCKENGAFTVLVDNYV
        .:   ..... . ::. .: .  . :. :. :   .::.        . :  .:  :.:
CCDS15 YVLAADKVASVASTLETTFETISTLSGVDLENGTCSHPLIP-------DKASPLLPANHV
     330       340       350       360       370              380  

           320       330       340        350       360       370  
pF1KB4 KEEEGTGVVHQAPYFGAEDYRVCMDFNIIRKDSLPV-CPVDASGCFTTEVTDFAGQYVKD
          .:::.:: ::  : ::: :  . :      ::. : :: .: ::    : ::  ...
CCDS15 TMAKGTGLVHTAPAHGMEDYGVASQHN------LPMDCLVDEDGVFT----DVAGPELQN
            390       400             410       420           430  

                  380       390       400       410       420      
pF1KB4 ------ADKSIIRTLKEQGRLLVATTFTHSYPFCWRSDTPLIYKAVPSWFVRVENMVDQL
             .   .:. :.    ::    ..::::. ::.  :.. .:  .::. .       
CCDS15 KAVLEEGTDVVIKMLQTAKNLLKEEKLVHSYPYDWRTKKPVVIRASKQWFINI-------
            440       450       460       470       480            

        430       440         450              460       470       
pF1KB4 LRNNDLCYWVPELVREKRF--GNWLK------DARD-WTISRNRYWGTPIPLWVSDDFEE
          .:.   . ::... .:  :. :.      : :  : :::.: ::.:::..     .:
CCDS15 ---TDIKTAAKELLKKVKFIPGSALNGMVEMMDRRPYWCISRQRVWGVPIPVFHHKTKDE
            490       500       510       520       530       540  

       480            490        500       510        520          
pF1KB4 VVCIGS-----VAELEELSGAKIS-DLHRESVDHLTIPSRCG-KGSLHRI--SEVFDCWF
        . :.:     ...: :  :. :   :  :..    . :. :   .:. .  ....: ::
CCDS15 YL-INSQTTEHIVKLVEQHGSDIWWTLPPEQLLPKEVLSEVGGPDALEYVPGQDILDIWF
             550       560       570       580       590       600 

      530       540       550       560       570       580        
pF1KB4 ESGSMPYAQVHYPFENKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFKNVI
       .::.  .. :  :  ..:       ::.  :: ::  ::: . :. ..:   . :.:.::
CCDS15 DSGT-SWSYV-LPGPDQR-------ADLYLEGKDQLGGWFQSSLLTSVAARKRAPYKTVI
              610               620       630       640       650  

      590       600         610              620       630         
pF1KB4 VNGLVLASDGQKMSKRKKN--YPDPV-------SIIQKYGADALRLYLINSPVVRAENLR
       :.:..:.  :.::::   :  .:: :       :    ::::.:: .. .: :     . 
CCDS15 VHGFTLGEKGEKMSKSLGNVIHPDVVVNGGQDQSKEPPYGADVLRWWVADSNVFTEVAIG
            660       670       680       690       700       710  

     640       650       660       670       680       690         
pF1KB4 FKEEGVRDVLKDVLLPWYNAYRFLIQNVLRLQKEEEIEFLYNENTVRESPNITDRWILSF
           .: .. .: .    :. :::. ::  .. :       ...   ..  . :...: .
CCDS15 ---PSVLNAARDDISKLRNTLRFLLGNVADFNPE-------TDSIPVNDMYVIDQYMLHL
               720       730       740              750       760  

     700       710       720         730       740           750   
pF1KB4 MQSLIGFFETEMAAYRLYTVVPRLVK--FVDILTNWYVRMNRRRL--KGENGME--DCVM
       .:.: . . ::.     .  : ::..  ..  :.:.:  . . ::  . ::  .  .:  
CCDS15 LQDLANKI-TELYKQYDFGKVVRLLRTFYTRELSNFYFSIIKDRLYCEKENDPKRRSCQT
            770        780       790       800       810       820 

           760       770       780       790       800       810   
pF1KB4 ALETLFSVLLSLCRLMAPYTPFLTELMYQNLKVLIDPVSVQDKDTLSIHYLMLPRVREEL
       ::  ...:..   : .::  : :.: ..:..  . .: ::     .:   .     ..  
CCDS15 ALVEILDVIV---RSFAPILPHLAEEVFQHIPYIKEPKSVFRTGWISTSSIW----KKPG
             830          840       850       860       870        

           820       830         840         850       860         
pF1KB4 IDKKTESAVSQMQSVIEL--GRVIRDRKTIPIKYP--LKEIVVIHQDPEALKDIKSLEKY
       ... .::: .. .: .    :.   . :.: .  :  : ::. . :. :           
CCDS15 LEEAVESACAMRDSFLGSIPGKNAAEYKVITVIEPGLLFEIIEMLQSEETSSTSQLNELM
          880       890       900       910       920       930    

     870       880       890       900       910       920         
pF1KB4 IIEELNVRKVTLSTDKNKYGIRLRAEPDHMVLGKRLKGAFKAVMTSIKQLSSEELEQFQK
                                                                   
CCDS15 MASESTLLAQEPREMTADVIELKGKFLINLEGGDIREESSYKVIVMPTTKEKCPRCWKYT
          940       950       960       970       980       990    




1262 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:03:26 2016 done: Fri Nov  4 23:03:27 2016
 Total Scan time:  4.890 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com