Result of FASTA (ccds) for pF1KB0499
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0499, 754 aa
  1>>>pF1KB0499 754 - 754 aa - 754 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8798+/-0.00111; mu= 7.4200+/- 0.066
 mean_var=122.0023+/-23.956, 0's: 0 Z-trim(106.2): 49  B-trim: 0 in 0/50
 Lambda= 0.116115
 statistics sampled from 8820 (8829) to 8820 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.271), width:  16
 Scan time:  3.360

The best scores are:                                      opt bits E(32554)
CCDS6249.1 NBN gene_id:4683|Hs108|chr8             ( 754) 4934 838.4       0
CCDS43753.1 NBN gene_id:4683|Hs108|chr8            ( 672) 4402 749.2 4.7e-216


>>CCDS6249.1 NBN gene_id:4683|Hs108|chr8                  (754 aa)
 initn: 4934 init1: 4934 opt: 4934  Z-score: 4473.2  bits: 838.4 E(32554):    0
Smith-Waterman score: 4934; 99.9% identity (100.0% similar) in 754 aa overlap (1-754:1-754)

               10        20        30        40        50        60
pF1KB0 MWKLLPAAGPAGGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MWKLLPAAGPAGGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 DEIPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGSKFRIEYEPLVACSSCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DEIPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGSKFRIEYEPLVACSSCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 DVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 LKAVQSKKQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNAKQHKKLSS
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LKAVESKKQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNAKQHKKLSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 AVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQSIMDMLQRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 AVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQSIMDMLQRQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 GLRPIPEAEIGLAVIFMTTKNYCDPQGHPSTGLKTTTPGPSLSQGVSVDEKLMPSAPVNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GLRPIPEAEIGLAVIFMTTKNYCDPQGHPSTGLKTTTPGPSLSQGVSVDEKLMPSAPVNT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 TTYVADTESEQADTWDLSERPKEIKVSKMEQKFRMLSQDAPTVKESCKTSSNNNSMVSNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TTYVADTESEQADTWDLSERPKEIKVSKMEQKFRMLSQDAPTVKESCKTSSNNNSMVSNT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 LAKMRIPNYQLSPTKLPSINKSKDRASQQQQTNSIRNYFQPSTKKRERDEENQEMSSCKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LAKMRIPNYQLSPTKLPSINKSKDRASQQQQTNSIRNYFQPSTKKRERDEENQEMSSCKS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB0 ARIETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASKSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ARIETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIVKNSASKSH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB0 AAEKLRSNKKREMDDVAIEDEVLEQLFKDTKPELEIDVKVQKQEEDVNVRKRPRMDIETN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 AAEKLRSNKKREMDDVAIEDEVLEQLFKDTKPELEIDVKVQKQEEDVNVRKRPRMDIETN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB0 DTFSDEAVPESSKISQENEIGKKRELKEDSLWSAKEISNNDKLQDDSEMLPKKLLLTEFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DTFSDEAVPESSKISQENEIGKKRELKEDSLWSAKEISNNDKLQDDSEMLPKKLLLTEFR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB0 SLVIKNSTSRNPSGINDDYGQLKNFKKFKKVTYPGAGKLPHIIGGSDLIAHHARKNTELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SLVIKNSTSRNPSGINDDYGQLKNFKKFKKVTYPGAGKLPHIIGGSDLIAHHARKNTELE
              670       680       690       700       710       720

              730       740       750    
pF1KB0 EWLRQEMEVQNQHAKEESLADDLFRYNPYLKRRR
       ::::::::::::::::::::::::::::::::::
CCDS62 EWLRQEMEVQNQHAKEESLADDLFRYNPYLKRRR
              730       740       750    

>>CCDS43753.1 NBN gene_id:4683|Hs108|chr8                 (672 aa)
 initn: 4402 init1: 4402 opt: 4402  Z-score: 3992.4  bits: 749.2 E(32554): 4.7e-216
Smith-Waterman score: 4402; 99.9% identity (100.0% similar) in 672 aa overlap (83-754:1-672)

             60        70        80        90       100       110  
pF1KB0 SVTNLSQTDEIPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGSKFRIEYEP
                                     ::::::::::::::::::::::::::::::
CCDS43                               MQNGFSRTLKSGDGITFGVFGSKFRIEYEP
                                             10        20        30

            120       130       140       150       160       170  
pF1KB0 LVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIV
               40        50        60        70        80        90

            180       190       200       210       220       230  
pF1KB0 KPEYFTEFLKAVQSKKQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNA
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KPEYFTEFLKAVESKKQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNA
              100       110       120       130       140       150

            240       250       260       270       280       290  
pF1KB0 KQHKKLSSAVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQHKKLSSAVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQS
              160       170       180       190       200       210

            300       310       320       330       340       350  
pF1KB0 IMDMLQRQGLRPIPEAEIGLAVIFMTTKNYCDPQGHPSTGLKTTTPGPSLSQGVSVDEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IMDMLQRQGLRPIPEAEIGLAVIFMTTKNYCDPQGHPSTGLKTTTPGPSLSQGVSVDEKL
              220       230       240       250       260       270

            360       370       380       390       400       410  
pF1KB0 MPSAPVNTTTYVADTESEQADTWDLSERPKEIKVSKMEQKFRMLSQDAPTVKESCKTSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MPSAPVNTTTYVADTESEQADTWDLSERPKEIKVSKMEQKFRMLSQDAPTVKESCKTSSN
              280       290       300       310       320       330

            420       430       440       450       460       470  
pF1KB0 NNSMVSNTLAKMRIPNYQLSPTKLPSINKSKDRASQQQQTNSIRNYFQPSTKKRERDEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NNSMVSNTLAKMRIPNYQLSPTKLPSINKSKDRASQQQQTNSIRNYFQPSTKKRERDEEN
              340       350       360       370       380       390

            480       490       500       510       520       530  
pF1KB0 QEMSSCKSARIETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEMSSCKSARIETSCSLLEQTQPATPSLWKNKEQHLSENEPVDTNSDNNLFTDTDLKSIV
              400       410       420       430       440       450

            540       550       560       570       580       590  
pF1KB0 KNSASKSHAAEKLRSNKKREMDDVAIEDEVLEQLFKDTKPELEIDVKVQKQEEDVNVRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KNSASKSHAAEKLRSNKKREMDDVAIEDEVLEQLFKDTKPELEIDVKVQKQEEDVNVRKR
              460       470       480       490       500       510

            600       610       620       630       640       650  
pF1KB0 PRMDIETNDTFSDEAVPESSKISQENEIGKKRELKEDSLWSAKEISNNDKLQDDSEMLPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PRMDIETNDTFSDEAVPESSKISQENEIGKKRELKEDSLWSAKEISNNDKLQDDSEMLPK
              520       530       540       550       560       570

            660       670       680       690       700       710  
pF1KB0 KLLLTEFRSLVIKNSTSRNPSGINDDYGQLKNFKKFKKVTYPGAGKLPHIIGGSDLIAHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KLLLTEFRSLVIKNSTSRNPSGINDDYGQLKNFKKFKKVTYPGAGKLPHIIGGSDLIAHH
              580       590       600       610       620       630

            720       730       740       750    
pF1KB0 ARKNTELEEWLRQEMEVQNQHAKEESLADDLFRYNPYLKRRR
       ::::::::::::::::::::::::::::::::::::::::::
CCDS43 ARKNTELEEWLRQEMEVQNQHAKEESLADDLFRYNPYLKRRR
              640       650       660       670  




754 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:04:30 2016 done: Sat Nov  5 02:04:30 2016
 Total Scan time:  3.360 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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