FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0097, 283 aa
  1>>>pF1KE0097 283 - 283 aa - 283 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4810+/-0.000671; mu= 15.2147+/- 0.041
 mean_var=69.9332+/-14.167, 0's: 0 Z-trim(110.6): 19  B-trim: 141 in 1/51
 Lambda= 0.153367
 statistics sampled from 11694 (11712) to 11694 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.36), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS34502.1 CCNC gene_id:892|Hs108|chr6            ( 283) 1917 432.5 1.6e-121
CCDS47461.1 CCNC gene_id:892|Hs108|chr6            ( 198) 1353 307.7 4.4e-84
CCDS45160.1 CCNK gene_id:8812|Hs108|chr14          ( 580)  265 67.2 3.2e-11


>>CCDS34502.1 CCNC gene_id:892|Hs108|chr6                 (283 aa)
 initn: 1917 init1: 1917 opt: 1917  Z-score: 2295.1  bits: 432.5 E(32554): 1.6e-121
Smith-Waterman score: 1917; 100.0% identity (100.0% similar) in 283 aa overlap (1-283:1-283)

               10        20        30        40        50        60
pF1KE0 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQ
              190       200       210       220       230       240

              250       260       270       280   
pF1KE0 WKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
       :::::::::::::::::::::::::::::::::::::::::::
CCDS34 WKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
              250       260       270       280   

>>CCDS47461.1 CCNC gene_id:892|Hs108|chr6                 (198 aa)
 initn: 1353 init1: 1353 opt: 1353  Z-score: 1623.0  bits: 307.7 E(32554): 4.4e-84
Smith-Waterman score: 1353; 100.0% identity (100.0% similar) in 198 aa overlap (86-283:1-198)

          60        70        80        90       100       110     
pF1KE0 KLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV
                                     ::::::::::::::::::::::::::::::
CCDS47                               MAPTCVFLASKVEEFGVVSNTRLIAAATSV
                                             10        20        30

         120       130       140       150       160       170     
pF1KE0 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPL
               40        50        60        70        80        90

         180       190       200       210       220       230     
pF1KE0 AWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVIL
              100       110       120       130       140       150

         240       250       260       270       280   
pF1KE0 KLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
              160       170       180       190        

>>CCDS45160.1 CCNK gene_id:8812|Hs108|chr14               (580 aa)
 initn: 204 init1: 127 opt: 265  Z-score: 315.0  bits: 67.2 E(32554): 3.2e-11
Smith-Waterman score: 305; 30.1% identity (55.7% similar) in 289 aa overlap (14-282:24-301)

                         10        20          30        40        
pF1KE0           MAGNFWQSSHYLQWILDKQDLLKE--RQKDLKFLSEEEYWKLQIFFTNVI
                              :  ::.:: .   . . :   .: .: .    :   :
CCDS45 MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARF---I
               10        20        30        40        50          

       50        60        70        80        90       100        
pF1KE0 QALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRL
         .: .: :. ...::. .::.:::  .:.:..   . .  :.:::.::::    .   .
CCDS45 FDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPK-KCKDI
        60        70        80        90       100       110       

      110       120          130       140       150       160     
pF1KE0 IAAATSVLKTRFSYAF---PKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQD
       : .: :.:.      :   :::      ...  :  ::. .   : : :::. ::.:...
CCDS45 IKTARSLLNDVQFGQFGDDPKE------EVMVLERILLQTIKFDLQVEHPYQFLLKYAKQ
        120       130             140       150       160       170

          170          180       190       200          210        
pF1KE0 M-GQEDM---LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA---CVVQQKD------
       . :...    :. .:: .:::.  : : : . : .::.: ...:   :  . ..      
CCDS45 LKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPM
              180       190       200       210       220       230

            220         230       240       250       260       270
pF1KE0 ARQWFAELSVDME-KILE-IIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQ
        :.:. ..  :.   .:: : . :: :: : :. .  ..    :.. :. .: :.    :
CCDS45 YRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQ-QMPHHTPHQLQQPPSLQPTPQVPQVQ
              240       250       260        270       280         

              280                                                  
pF1KE0 GPNGSQNSSYSQS                                               
         . ::.:  ::                                                
CCDS45 QSQPSQSSEPSQPQQKDPQQPAQQQQPAQQPKKPSPQPSSPRQVKRAVVVSPKEENKAAE
     290       300       310       320       330       340         




283 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:15:52 2016 done: Sat Nov  5 02:15:53 2016
 Total Scan time:  2.520 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]