FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5412, 352 aa
  1>>>pF1KB5412 352 - 352 aa - 352 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7842+/-0.000748; mu= 10.6420+/- 0.046
 mean_var=107.8288+/-21.379, 0's: 0 Z-trim(112.1): 16  B-trim: 78 in 1/50
 Lambda= 0.123511
 statistics sampled from 12879 (12886) to 12879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.396), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS14177.1 SYAP1 gene_id:94056|Hs108|chrX         ( 352) 2282 416.7 1.4e-116


>>CCDS14177.1 SYAP1 gene_id:94056|Hs108|chrX              (352 aa)
 initn: 2282 init1: 2282 opt: 2282  Z-score: 2206.3  bits: 416.7 E(32554): 1.4e-116
Smith-Waterman score: 2282; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KB5 MFRGLSSWLGLQQPVAGGGQPNGDAPPEQPSETVAESAEEELQQAGDQELLHQAKDFGNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MFRGLSSWLGLQQPVAGGGQPNGDAPPEQPSETVAESAEEELQQAGDQELLHQAKDFGNY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LFNFASAATKKITESVAETAQTIKKSVEEGKIDGIIDKTIIGDFQKEQKKFVEEQHTKKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LFNFASAATKKITESVAETAQTIKKSVEEGKIDGIIDKTIIGDFQKEQKKFVEEQHTKKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 EAAVPPWVDTNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EAAVPPWVDTNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LSKMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKSNGREQDLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LSKMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKSNGREQDLPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRKEMEQLVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRKEMEQLVLD
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KB5 KKQEETAVLEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEKMLQEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KKQEETAVLEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEKMLQEEN
              310       320       330       340       350  




352 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:34:54 2016 done: Sat Nov  5 12:34:55 2016
 Total Scan time:  2.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]