Result of FASTA (omim) for pF1KB5360
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5360, 368 aa
  1>>>pF1KB5360 368 - 368 aa - 368 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2139+/-0.000408; mu= 12.1002+/- 0.025
 mean_var=117.4226+/-26.972, 0's: 0 Z-trim(114.6): 180  B-trim: 2137 in 2/52
 Lambda= 0.118358
 statistics sampled from 24184 (24499) to 24184 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.287), width:  16
 Scan time:  6.830

The best scores are:                                      opt bits E(85289)
NP_003601 (OMIM: 603343) mRNA export factor [Homo  ( 368) 2574 450.9 2.2e-126
XP_005260639 (OMIM: 603343) PREDICTED: mRNA export ( 368) 2574 450.9 2.2e-126
NP_001015885 (OMIM: 603343) mRNA export factor [Ho ( 368) 2574 450.9 2.2e-126
XP_011527390 (OMIM: 603343) PREDICTED: mRNA export ( 368) 2574 450.9 2.2e-126
XP_011527391 (OMIM: 603343) PREDICTED: mRNA export ( 368) 2574 450.9 2.2e-126
XP_005260640 (OMIM: 603343) PREDICTED: mRNA export ( 406) 2574 450.9 2.3e-126
XP_016883597 (OMIM: 603343) PREDICTED: mRNA export ( 357) 2382 418.1 1.6e-116
XP_011527389 (OMIM: 603343) PREDICTED: mRNA export ( 357) 2382 418.1 1.6e-116
NP_001007794 (OMIM: 603719) mitotic checkpoint pro ( 326)  664 124.7   3e-28
NP_004716 (OMIM: 603719) mitotic checkpoint protei ( 328)  664 124.7   3e-28
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334)  232 50.9 4.9e-06
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334)  232 50.9 4.9e-06
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334)  232 50.9 4.9e-06
NP_004805 (OMIM: 607797) U5 small nuclear ribonucl ( 357)  202 45.8 0.00018
NP_942593 (OMIM: 610767,611081) autophagy-related  ( 444)  192 44.2 0.00069
XP_005246143 (OMIM: 610767,611081) PREDICTED: auto ( 463)  192 44.2 0.00071
XP_005246141 (OMIM: 610767,611081) PREDICTED: auto ( 480)  192 44.2 0.00073
NP_001177196 (OMIM: 610767,611081) autophagy-relat ( 491)  192 44.2 0.00074
NP_001177195 (OMIM: 610767,611081) autophagy-relat ( 523)  192 44.3 0.00078
XP_006712671 (OMIM: 610767,611081) PREDICTED: auto ( 540)  192 44.3  0.0008
NP_060444 (OMIM: 610767,611081) autophagy-related  ( 588)  192 44.3 0.00085
XP_016863186 (OMIM: 609005) PREDICTED: WD repeat-c ( 982)  195 45.0 0.00087
NP_110430 (OMIM: 610767,611081) autophagy-related  ( 607)  192 44.3 0.00087
XP_005246139 (OMIM: 610767,611081) PREDICTED: auto ( 624)  192 44.3 0.00089
XP_005262782 (OMIM: 609005) PREDICTED: WD repeat-c (1216)  195 45.1   0.001
NP_851782 (OMIM: 609005) WD repeat-containing prot (1283)  195 45.1  0.0011
XP_011529884 (OMIM: 609005) PREDICTED: WD repeat-c (1290)  195 45.1  0.0011
XP_016863178 (OMIM: 609005) PREDICTED: WD repeat-c (1307)  195 45.1  0.0011
XP_016863179 (OMIM: 609005) PREDICTED: WD repeat-c (1307)  195 45.1  0.0011
XP_016863175 (OMIM: 609005) PREDICTED: WD repeat-c (1314)  195 45.1  0.0011
XP_016863176 (OMIM: 609005) PREDICTED: WD repeat-c (1314)  195 45.1  0.0011
XP_016863177 (OMIM: 609005) PREDICTED: WD repeat-c (1314)  195 45.1  0.0011
NP_733828 (OMIM: 609005) WD repeat-containing prot (1322)  195 45.1  0.0011
NP_006089 (OMIM: 176981) receptor of activated pro ( 317)  184 42.7  0.0014
NP_008882 (OMIM: 601787) transcription initiation  ( 800)  181 42.5  0.0039
XP_016866423 (OMIM: 215100,266500,601757,614879) P ( 199)  169 40.0  0.0058
NP_115708 (OMIM: 616850) WD repeat domain-containi ( 315)  170 40.3  0.0072
NP_001093207 (OMIM: 616850) WD repeat domain-conta ( 315)  170 40.3  0.0072
NP_000279 (OMIM: 215100,266500,601757,614879) pero ( 323)  169 40.2  0.0083
NP_001269467 (OMIM: 139380,613065,616973) guanine  ( 240)  167 39.7  0.0084


>>NP_003601 (OMIM: 603343) mRNA export factor [Homo sapi  (368 aa)
 initn: 2574 init1: 2574 opt: 2574  Z-score: 2390.1  bits: 450.9 E(85289): 2.2e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
              310       320       330       340       350       360

               
pF1KB5 ELKPRNKK
       ::::::::
NP_003 ELKPRNKK
               

>>XP_005260639 (OMIM: 603343) PREDICTED: mRNA export fac  (368 aa)
 initn: 2574 init1: 2574 opt: 2574  Z-score: 2390.1  bits: 450.9 E(85289): 2.2e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
              310       320       330       340       350       360

               
pF1KB5 ELKPRNKK
       ::::::::
XP_005 ELKPRNKK
               

>>NP_001015885 (OMIM: 603343) mRNA export factor [Homo s  (368 aa)
 initn: 2574 init1: 2574 opt: 2574  Z-score: 2390.1  bits: 450.9 E(85289): 2.2e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
              310       320       330       340       350       360

               
pF1KB5 ELKPRNKK
       ::::::::
NP_001 ELKPRNKK
               

>>XP_011527390 (OMIM: 603343) PREDICTED: mRNA export fac  (368 aa)
 initn: 2574 init1: 2574 opt: 2574  Z-score: 2390.1  bits: 450.9 E(85289): 2.2e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
              310       320       330       340       350       360

               
pF1KB5 ELKPRNKK
       ::::::::
XP_011 ELKPRNKK
               

>>XP_011527391 (OMIM: 603343) PREDICTED: mRNA export fac  (368 aa)
 initn: 2574 init1: 2574 opt: 2574  Z-score: 2390.1  bits: 450.9 E(85289): 2.2e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
              310       320       330       340       350       360

               
pF1KB5 ELKPRNKK
       ::::::::
XP_011 ELKPRNKK
               

>>XP_005260640 (OMIM: 603343) PREDICTED: mRNA export fac  (406 aa)
 initn: 2574 init1: 2574 opt: 2574  Z-score: 2389.5  bits: 450.9 E(85289): 2.3e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:39-406)

                                             10        20        30
pF1KB5                               MSLFGTTSGFGTSGTSMFGSATTDNHNPMK
                                     ::::::::::::::::::::::::::::::
XP_005 PPGSALLRDAGARAGLLTKLRYWALEARFKMSLFGTTSGFGTSGTSMFGSATTDNHNPMK
       10        20        30        40        50        60        

               40        50        60        70        80        90
pF1KB5 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL
       70        80        90       100       110       120        

              100       110       120       130       140       150
pF1KB5 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD
      130       140       150       160       170       180        

              160       170       180       190       200       210
pF1KB5 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP
      190       200       210       220       230       240        

              220       230       240       250       260       270
pF1KB5 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP
      250       260       270       280       290       300        

              280       290       300       310       320       330
pF1KB5 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIF
      310       320       330       340       350       360        

              340       350       360        
pF1KB5 AYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRNKK
       ::::::::::::::::::::::::::::::::::::::
XP_005 AYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRNKK
      370       380       390       400      

>>XP_016883597 (OMIM: 603343) PREDICTED: mRNA export fac  (357 aa)
 initn: 2382 init1: 2382 opt: 2382  Z-score: 2213.0  bits: 418.1 E(85289): 1.6e-116
Smith-Waterman score: 2382; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:1-340)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
       ::::::::::::::::::::::::::::::::::::::::                    
XP_016 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKACCCFCVSLFEGLLCEP   
              310       320       330       340       350          

               
pF1KB5 ELKPRNKK

>>XP_011527389 (OMIM: 603343) PREDICTED: mRNA export fac  (357 aa)
 initn: 2382 init1: 2382 opt: 2382  Z-score: 2213.0  bits: 418.1 E(85289): 1.6e-116
Smith-Waterman score: 2382; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:1-340)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
       ::::::::::::::::::::::::::::::::::::::::                    
XP_011 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKACCCFCVSLFEGLLCEP   
              310       320       330       340       350          

               
pF1KB5 ELKPRNKK

>>NP_001007794 (OMIM: 603719) mitotic checkpoint protein  (326 aa)
 initn: 594 init1: 211 opt: 664  Z-score: 628.1  bits: 124.7 E(85289): 3e-28
Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (31-366:6-325)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
                                     ...... :.:.:. ..::: :  ..::...
NP_001                          MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
                                        10        20          30   

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       :: ..:: ..:  ... . : :  ::: ::: :   : ....... :.  :: ::...: 
NP_001 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
            40        50           60         70        80         

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
         .. ::::.. ...   :. . ..:::::.:.:.:: :.     ... ::. :  .:  
NP_001 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
      90       100         110       120       130       140       

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
          .:.:: : ..:..:.:.    .: :: ::.: ::.  : .::    :..:.::::::
NP_001 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
       150       160       170       180       190           200   

               250       260       270       280       290         
pF1KB5 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
       :..:..: :.  : ...::::: . .:    ..:: ::.:.:: .:.:.:: ::::  ..
NP_001 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
           210       220       230          240       250       260

     300       310       320       330       340       350         
pF1KB5 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
       ::   . .:   ..    :..  :...:. .: :::: . .  .  .:.  . ::.:...
NP_001 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
              270       280       290        300         310       

     360         
pF1KB5 E-ELKPRNKK
       . : ::..  
NP_001 DAETKPKST 
       320       

>>NP_004716 (OMIM: 603719) mitotic checkpoint protein BU  (328 aa)
 initn: 594 init1: 211 opt: 664  Z-score: 628.1  bits: 124.7 E(85289): 3e-28
Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (31-366:6-325)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
                                     ...... :.:.:. ..::: :  ..::...
NP_004                          MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
                                        10        20          30   

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       :: ..:: ..:  ... . : :  ::: ::: :   : ....... :.  :: ::...: 
NP_004 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
            40        50           60         70        80         

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
         .. ::::.. ...   :. . ..:::::.:.:.:: :.     ... ::. :  .:  
NP_004 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
      90       100         110       120       130       140       

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
          .:.:: : ..:..:.:.    .: :: ::.: ::.  : .::    :..:.::::::
NP_004 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
       150       160       170       180       190           200   

               250       260       270       280       290         
pF1KB5 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
       :..:..: :.  : ...::::: . .:    ..:: ::.:.:: .:.:.:: ::::  ..
NP_004 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
           210       220       230          240       250       260

     300       310       320       330       340       350         
pF1KB5 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
       ::   . .:   ..    :..  :...:. .: :::: . .  .  .:.  . ::.:...
NP_004 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
              270       280       290        300         310       

     360          
pF1KB5 E-ELKPRNKK 
       . : ::..   
NP_004 DAETKPKSPCT
       320        




368 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:29:57 2016 done: Sat Nov  5 12:29:58 2016
 Total Scan time:  6.830 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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