GENSCAN 1.0	Date run:  6-Nov-116	Time: 22:35:14

Sequence gi568815590r:6877773_6996889 : 119117 bp : 46.08% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init -   3202   3070  133  1  1   89   36   111 0.083   6.30
 1.00 Prom -   3326   3287   40                              -2.46

 2.03 PlyA -   7476   7471    6                               1.05
 2.02 Term -  10209  10128   82  2  1  101   50    48 0.496  -0.53
 2.01 Init -  14379  14114  266  0  2   50  105   125 0.912   6.89
 2.00 Prom -  16254  16215   40                              -5.46

 3.02 PlyA -  16274  16269    6                               1.05
 3.01 Sngl -  21696  21160  537  0  0   91   42   569 0.887  48.68
 3.00 Prom -  23690  23651   40                              -3.16

 4.09 PlyA -  24695  24690    6                               1.05
 4.08 Term -  26034  25972   63  0  0   43   55    33 0.159  -6.61
 4.07 Intr -  27705  27456  250  2  1  -54   62   315 0.434  12.14
 4.06 Intr -  30318  30187  132  2  0   60   62    72 0.428   1.56
 4.05 Intr -  30752  30624  129  1  0   62  111    92 0.872   8.71
 4.04 Intr -  32738  32604  135  1  0    6   89    94 0.007   0.98
 4.03 Intr -  37442  37325  118  0  1   80   96    28 0.008   2.32
 4.02 Intr -  44075  44004   72  0  0  100   75    26 0.353   1.88
 4.01 Init -  48263  48071  193  2  1   66   86   192 0.802  14.16
 4.00 Prom -  48339  48300   40                              -4.06

 5.08 PlyA -  48480  48475    6                               1.05
 5.07 Term -  57006  56566  441  0  0  110   54   140 0.961   8.06
 5.06 Intr -  58369  58284   86  2  2  117   59    37 0.939   3.24
 5.05 Intr -  59139  58956  184  0  1  134   94    31 0.460   7.66
 5.04 Intr -  62611  62439  173  2  2   -5   86   129 0.456   3.06
 5.03 Intr -  67423  67262  162  2  0   87   27    93 0.500   3.05
 5.02 Intr -  73839  73656  184  0  1  129  110   101 0.988  15.76
 5.01 Init -  76746  76648   99  0  0   88   -7   108 0.304   1.58
 5.00 Prom -  77398  77359   40                              -7.56

 6.10 PlyA -  79016  79011    6                               1.05
 6.09 Term -  79997  79885  113  0  2   40   54   107 0.723   1.22
 6.08 Intr -  81629  81549   81  0  0  120   97    15 0.827   5.21
 6.07 Intr -  84193  83983  211  1  1   15   93   135 0.005   5.19
 6.06 Intr -  91290  91167  124  2  1  118   94    39 0.236   8.09
 6.05 Intr -  94792  94708   85  2  1   43    5   104 0.015  -3.52
 6.04 Intr - 100874 100688  187  2  1  135   94   121 0.391  16.66
 6.03 Intr - 101428 101345   84  1  0   69  115    22 0.324   3.02
 6.02 Intr - 110451 110328  124  2  1   83   94    74 0.685   8.09
 6.01 Init - 118271 118222   50  2  2   73   80    66 0.193   2.79

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  32971  32909   63  1  0   70  103   102 0.922  11.05
S.002 Init -  84148  83983  166  1  1   58   93   148 0.905  12.09
S.003 Term - 100107  99998  110  1  2  106   49    59 0.894   2.47


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:6877773_6996889|GENSCAN_predicted_peptide_1|45_aa
MDYYAAMKKDELMSFAATWMKLETTILSKLSQGQKTKHRMFSLIX

>gi568815590r:6877773_6996889|GENSCAN_predicted_CDS_1|135_bp
atggactactatgcagccatgaaaaaggatgagctcatgtcctttgcagcaacatggatg
aagctggaaaccaccattctgagcaaactatcacaaggacaaaaaaccaaacaccgcatg
ttctcactcatagnn

>gi568815590r:6877773_6996889|GENSCAN_predicted_peptide_2|115_aa
MTEAEQSHYLPSASQRPRKAADVVQSKPEGLSTRAVYGENPDRSLKAPELEVPMSQGRKG
WMFQLKKRERVCLFVLFLPQEIAQCRPCCSIHFSHLIITTSNLVPYAKDKHVDDR

>gi568815590r:6877773_6996889|GENSCAN_predicted_CDS_2|348_bp
atgacggaggctgagcagtcccactatctgccatctgcaagccagaggcccaggaaagct
gcagatgtcgtgcagtccaaacccgagggcctgagcaccagggcagtctacggagaaaat
cctgatcggagtcttaaagcgcctgaactagaagttccaatgtcccagggcaggaaagga
tggatgttccagctcaagaaaagagagcgagtttgcctctttgttctattcctcccccaa
gaaattgcacaatgccgcccatgctgttcaattcatttttctcatctaataatcacaaca
tctaatctcgtcccctatgcaaaagacaagcatgttgacgaccgctga

>gi568815590r:6877773_6996889|GENSCAN_predicted_peptide_3|178_aa
MAPKAKMEAPAPPEAEAKVKALKAKKVVLKGVHSHKKKRRSARHPLSDNTATPEAAQISS
RQRPPKNKHPDILERAPPGEQAAQISSRELPPTGRTSAKISSGERLLENKLDHYAIIELP
LTTESAVKKTEDNNTLLFIVDVKANKHQIKQAVKKLYDMDVAKVNSLIRPDGEKKAYV

>gi568815590r:6877773_6996889|GENSCAN_predicted_CDS_3|537_bp
atggcgccgaaagcaaagatggaagctcctgcccctcctgaagcggaagccaaagtgaag
gctttgaaggccaagaaggtagtgttgaaaggcgtccacagccacaaaaaaaaaagaaga
tccgcacgtcacccactttccgataacactgcgactccggaggcagcccaaatatcctcg
agacagcgccccccgaagaacaagcacccagatatcctcgagagagctccccctggagaa
caagcagcccagatatcctcgagagagctcccccccaccgggagaacaagcgccaaaata
tcctcgggagagcgtctcctggagaacaagcttgaccactatgctatcatcgagttgccg
ctgaccactgagtcggccgtgaagaagacagaagacaacaacacacttctgtttattgtg
gatgttaaagccaacaagcaccagatcaaacaggctgtgaagaagctctatgacatggat
gtggccaaggtcaactccctgattcggcctgatggagagaagaaggcatatgtttga

>gi568815590r:6877773_6996889|GENSCAN_predicted_peptide_4|363_aa
MRTLTILTAVLLVALQAKAEPLQAEDDPLQAKAYEADAQEQRGANDQDFAVSFAEDASSS
LRALGPDPGNKQIEKTLSENGWDHRNPQCVPQAPVMCRDDARDPGMEKPTPAFQGWGDRE
IYSYQIARFHDSLMEFAPGFSSNVAMAQFPLLLARDQQTYQAKPSAQGNRPLSDHYGGQG
LSLWTAYQDPRRPPMLSHTMQSREFQGANGLHHGCWTRDLSDLSPIFSEPSTEPGIQQTT
NSCFLKERCSYDNSSCFGCCSKCVIKQQRQLATSTTHLVQELLMNTQYSGGSDEKRSGRP
REIDHDQFRAIIEADPLTTTQEVAKQLNVDHSTVIRHLKQIGKAALMPSVHTSPWSAYAG
DWG

>gi568815590r:6877773_6996889|GENSCAN_predicted_CDS_4|1092_bp
atgagaaccctcaccatcctcactgctgttctcctcgtggccctccaggccaaggctgag
ccactccaagctgaggatgatccactgcaggcaaaagcttatgaggctgatgcccaggag
cagcgtggggcaaatgaccaggactttgccgtctcctttgcagaggatgcaagctcaagt
cttagagctttgggaccagaccctggcaataagcaaatagagaaaacactctctgaaaac
ggatgggatcatcgtaatccacaatgtgttccccaagcccctgtgatgtgcagggacgat
gcaagggaccctgggatggagaagcccacccctgccttccagggttggggtgacagagaa
atctacagttaccaaattgccagatttcatgactctctcatggagtttgctcctggattt
tcctccaacgtggctatggctcagttcccactcctcctggctcgtgatcagcagacatac
caggctaagccatcagcacaaggcaataggccactcagtgatcactacggaggacaaggc
ctctctctgtggactgcctaccaagatcctcgcaggccacctatgctgagccacaccatg
cagtcccgagagttccagggagccaacgggctccaccacggctgttggaccagggacctc
tctgacttatcccctatattctccgagcctagcacagaacctggcatacaacaaacgacc
aacagctgtttcctgaaggaaaggtgctcctatgataactcatcatgctttggttgttgt
tcaaaatgcgtcataaagcagcagagacaacttgcaacatcaacaacgcatttggtccag
gaactgctaatgaacacacagtacagtgggggttcagatgagaagcgtagtggccggcca
cgggaaattgaccacgaccagttcagagcaatcatcgaggctgatcctcttacaactacc
caagaagttgccaaacaactcaacgtcgaccattctacggtcattcggcatctgaagcaa
attggaaaggctgcactcatgccctcagttcacaccagtccttggagcgcctacgctggt
gactggggctga

>gi568815590r:6877773_6996889|GENSCAN_predicted_peptide_5|442_aa
MASDNIAPAQGVVKGGNGLAGIGDTKETCLDCGVTPAIRSLALLAAILLVALQARAEPLQ
AIADEATAQEQPGADDQEVVDSFAWDERAPLQVSASPERGVKVLTVSRLMVSRLLLSVQT
RLNIPWKFKTMWMREEFQPRLLCLGVDTAGKATPTRKAITSEDSALIQGFVLGNSGLTRT
RDTKESHLDCGVIPKPDSPYSPSCRKVTPAMRIIALLAAILLVALQVRAGPLQARGDEAP
GQEQRGPEDQDISISFAWDKSSALQVSGSTRGMVCSCRLVFCRRTELRVGNCLIGGKPTV
PLTIVEDVLSTAYEDMITKLQGQVQLGPQISYILDLAVPVYESTTHAWKNTFSVQAMAPL
IWRVIHRMPPQLPRVTEKLQFANKGTVILVGLFPILDQNNLMGQDTAVTTNTNHPQCPEP
RRRKQVFSTSTHADSEQVSAPD

>gi568815590r:6877773_6996889|GENSCAN_predicted_CDS_5|1329_bp
atggcttcagacaacatcgcccctgcccaaggggtcgtcaagggaggcaatggccttgct
ggaattggagacaccaaggaaacttgccttgactgtggggtgaccccagccataaggagc
cttgccctccttgctgccattctcctggtggccctgcaggctcgggcggagccactccag
gcaattgctgatgaggctacagcccaggagcagcctggagcagatgatcaggaagtggtt
gattcctttgcatgggatgaaagagctcctcttcaggtttcagcttcaccagaacgtggt
gtcaaggttctgacggtgtccaggctgatggtgtcgaggctcttattaagtgtccagact
cgtttaaatattccctggaaattcaagacgatgtggatgagagaagagtttcagccacgt
ctactgtgcctgggagtcgatactgctggaaaggccacccctacccgaaaggccatcacc
tcagaagacagtgctctgatccaagggtttgtcctgggaaacagtggcctcaccagaacc
agagacaccaaggaatctcatcttgactgtggggtcatccccaaaccagactcaccttac
tctccttcctgccgcaaggtcaccccagccatgaggattatcgccctcctcgctgctatt
ctcttggtagccctccaggtccgggcaggcccactccaggcaagaggtgatgaggctcca
ggccaggagcagcgtgggccagaagaccaggacatatctatttcctttgcatgggataaa
agctctgctcttcaggtttcaggctcaacaaggggcatggtctgctcttgcagattagta
ttctgccggcgaacagaacttcgtgttgggaactgcctcattggtggtaaacccactgta
cctttaacaatagttgaggatgtcttgtcaacggcctatgaggacatgatcacaaagctc
cagggacaagtccagcttggcccacagatttcttatattttggatctagcagttccagtt
tatgaatccactacacatgcttggaaaaataccttctctgttcaagccatggctcctctt
atctggagggtcattcatagaatgcccccacaacttccaagagtgacagagaaactacag
tttgcaaataaagggacagtgattctagtaggattattccccattcttgaccaaaacaat
ctgatgggccaagacacagctgtgaccaccaacaccaaccacccacaatgcccagagccc
aggagaaggaagcaggtgttctccacatctacccatgcagattctgagcaggtctcagcc
ccagactga

>gi568815590r:6877773_6996889|GENSCAN_predicted_peptide_6|352_aa
MVAFLLLQGAEAAQGPRLRQSHFRQELMKLQPRSSLEQMIRKWLMPLHGMKVPLFRFQPD
KIIVLSTLIPTGDYSPHNLKNLFMRMVTPAMRTLAILAAILLVALQAQAEPLQARADEVA
AAPEQIAADIPEVVVSLAWDESLAPKHPEENHFDHEITTNQPFLTATNTDLAISSTRLRR
SHFGQELMKLQPRSSLEQMIRKCLFPLHGMKALHFHFQLFHLSNLLQMLHNCRMVDVEFF
GNFLCSCKQISFNDCSQLVVVNFQWQATMLLIFKGLVSFAELPEPPLHCPRTLLRCSCRI
RDYHLQERNYGTCTSDTAVTTNTNDKCPEPRRRMQVFLRTPHADSEQIVAPD

>gi568815590r:6877773_6996889|GENSCAN_predicted_CDS_6|1059_bp
atggtagcgttcttgttgctgcagggggctgaggcagcccaggggcccaggctcaggcag
agccacttcaggcaagagctgatgaagctgcagcccaggagcagcctggagcagatgatc
aggaaatggctcatgcctttacatggcatgaaagtgccgctcttccgctttcagcctgat
aaaatcattgtcctctccaccctgattcctacaggagactactcaccccataacctcaaa
aacctcttcatgaggatggtgaccccagccatgaggaccctcgccatccttgctgccatt
ctcctggtggccctgcaggcccaggctgagccactccaggcaagagctgatgaggttgct
gcagccccggagcagattgcagcggacatcccagaagtggttgtttcccttgcatgggac
gaaagcttggctccaaagcatccagaggaaaatcactttgaccacgagatcaccaccaac
cagcctttccttactgctacaaacacggaccttgccatctccagtacacggctcaggcgg
agccacttcgggcaagagctgatgaagctgcagcccaggagtagcctggagcagatgatc
aggaagtgtctgtttcctttacatgggatgaaagcgctgcacttccactttcagcttttt
cacctttccaatttgcttcaaatgctgcacaactgcagaatggttgatgtcgaattcttt
ggcaactttttatgtagttgtaagcagatcagcttcaatgattgttctcaattggttgtc
gtcaacttccaatggcaggccactatgctcctcatcttcaagggtctcgtctcctttgca
gaacttccagaaccaccactgcactgcccaagaaccctcttgagatgctcttgcagaata
agagattatcatcttcaagaacgcaactatggaacctgcacctccgacactgccgtgacc
accaacactaacgacaaatgcccagagcccaggagaagaatgcaggtgtttttacgcaca
ccccatgcagattctgagcagatcgtggctccagactga