Result of FASTA (omim) for pF1KE0131
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0131, 183 aa
  1>>>pF1KE0131 183 - 183 aa - 183 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8878+/-0.00034; mu= 10.3121+/- 0.021
 mean_var=74.8118+/-15.412, 0's: 0 Z-trim(116.2): 49  B-trim: 917 in 2/55
 Lambda= 0.148282
 statistics sampled from 27072 (27121) to 27072 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.318), width:  16
 Scan time:  5.740

The best scores are:                                      opt bits E(85289)
NP_149076 (OMIM: 300450) fetal and adult testis-ex ( 183) 1209 267.4 9.2e-72
XP_005246742 (OMIM: 614785,617086) PREDICTED: mito ( 289)  142 39.2  0.0071
NP_001263991 (OMIM: 614785,617086) mitochondrial f ( 291)  142 39.2  0.0071
XP_006712701 (OMIM: 614785,617086) PREDICTED: mito ( 291)  142 39.2  0.0071
XP_005246739 (OMIM: 614785,617086) PREDICTED: mito ( 317)  142 39.2  0.0077
XP_016860001 (OMIM: 614785,617086) PREDICTED: mito ( 317)  142 39.2  0.0077
XP_016860004 (OMIM: 614785,617086) PREDICTED: mito ( 243)  140 38.8  0.0082
NP_001263992 (OMIM: 614785,617086) mitochondrial f ( 243)  140 38.8  0.0082
XP_005246743 (OMIM: 614785,617086) PREDICTED: mito ( 269)  140 38.8   0.009


>>NP_149076 (OMIM: 300450) fetal and adult testis-expres  (183 aa)
 initn: 1209 init1: 1209 opt: 1209  Z-score: 1409.3  bits: 267.4 E(85289): 9.2e-72
Smith-Waterman score: 1209; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KE0 MAGGPPNTKAEMEMSLAEELNHGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MAGGPPNTKAEMEMSLAEELNHGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SASAKRVWNMTATRPKKMGSQLPKPRMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 SASAKRVWNMTATRPKKMGSQLPKPRMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VAQTSLEEFNVLEMEVMRRQLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 VAQTSLEEFNVLEMEVMRRQLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLW
              130       140       150       160       170       180

          
pF1KE0 MNQ
       :::
NP_149 MNQ
          

>>XP_005246742 (OMIM: 614785,617086) PREDICTED: mitochon  (289 aa)
 initn: 165 init1: 133 opt: 142  Z-score: 172.6  bits: 39.2 E(85289): 0.0071
Smith-Waterman score: 142; 20.9% identity (56.1% similar) in 148 aa overlap (36-180:143-286)

          10        20        30        40        50        60     
pF1KE0 PNTKAEMEMSLAEELNHGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAK
                                     :.  .:  .:  :.... ..:..   .   
XP_005 LKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQNGQ-LVRND
            120       130       140       150       160        170 

          70        80        90          100       110       120  
pF1KE0 RVWNMTATRPKKMGSQLPKPRMLRESG---HGDAHLQEYAGNFQGIRFHYDRNPGTDAVA
        .:. . . :..  :..  :    :     .: .       . ...:.  .   . :.. 
XP_005 SLWHRSDSAPRNKISRFQAPISAPEYTPVLRGGSAAATSNPHHDNVRYGIS---NIDTTI
             180       190       200       210       220           

            130       140       150       160       170       180  
pF1KE0 QTSLEEFNVLEMEVMRRQLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMN
       . . ....:..   .:::.  .::::. :::..    .:: .. .. :.  . : :::  
XP_005 EGTSDDLTVVDAASLRRQIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFR
      230       240       250       260       270       280        

        
pF1KE0 Q
        
XP_005 R
        

>>NP_001263991 (OMIM: 614785,617086) mitochondrial fissi  (291 aa)
 initn: 149 init1: 133 opt: 142  Z-score: 172.6  bits: 39.2 E(85289): 0.0071
Smith-Waterman score: 142; 22.2% identity (55.7% similar) in 185 aa overlap (5-180:109-288)

                                         10        20            30
pF1KE0                           MAGGPPNTKAEMEMSLAEELNHGRQ-GEN---QE
                                     ::.:  . :.  . .:.. :. .::   :.
NP_001 STPFKPLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQN
       80        90       100       110       120       130        

                40        50        60        70        80         
pF1KE0 -HLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ----LPKP
        .::  . .   : ...     . : . .:. .::. . ..  .  ..  .:    : . 
NP_001 GQLVRNDSLVTPSPQQARVCPPHMLPEDGANLSSARGILSLIQSSTRRAYQQILDVLDEN
      140       150       160       170       180       190        

          90       100       110       120       130       140     
pF1KE0 RMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRRQLYAVN
       :  :   .: .       . ...:.  .   . :.. . . ....:..   .:::.  .:
NP_001 R--RPVLRGGSAAATSNPHHDNVRYGIS---NIDTTIEGTSDDLTVVDAASLRRQIIKLN
        200       210       220          230       240       250   

         150       160       170       180   
pF1KE0 RRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
       :::. :::..    .:: .. .. :.  . : :::   
NP_001 RRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
           260       270       280       290 

>>XP_006712701 (OMIM: 614785,617086) PREDICTED: mitochon  (291 aa)
 initn: 149 init1: 133 opt: 142  Z-score: 172.6  bits: 39.2 E(85289): 0.0071
Smith-Waterman score: 142; 22.2% identity (55.7% similar) in 185 aa overlap (5-180:109-288)

                                         10        20            30
pF1KE0                           MAGGPPNTKAEMEMSLAEELNHGRQ-GEN---QE
                                     ::.:  . :.  . .:.. :. .::   :.
XP_006 STPFKPLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQN
       80        90       100       110       120       130        

                40        50        60        70        80         
pF1KE0 -HLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ----LPKP
        .::  . .   : ...     . : . .:. .::. . ..  .  ..  .:    : . 
XP_006 GQLVRNDSLVTPSPQQARVCPPHMLPEDGANLSSARGILSLIQSSTRRAYQQILDVLDEN
      140       150       160       170       180       190        

          90       100       110       120       130       140     
pF1KE0 RMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRRQLYAVN
       :  :   .: .       . ...:.  .   . :.. . . ....:..   .:::.  .:
XP_006 R--RPVLRGGSAAATSNPHHDNVRYGIS---NIDTTIEGTSDDLTVVDAASLRRQIIKLN
        200       210       220          230       240       250   

         150       160       170       180   
pF1KE0 RRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
       :::. :::..    .:: .. .. :.  . : :::   
XP_006 RRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
           260       270       280       290 

>>XP_005246739 (OMIM: 614785,617086) PREDICTED: mitochon  (317 aa)
 initn: 133 init1: 133 opt: 142  Z-score: 172.0  bits: 39.2 E(85289): 0.0077
Smith-Waterman score: 142; 22.2% identity (55.7% similar) in 185 aa overlap (5-180:135-314)

                                         10        20            30
pF1KE0                           MAGGPPNTKAEMEMSLAEELNHGRQ-GEN---QE
                                     ::.:  . :.  . .:.. :. .::   :.
XP_005 STPFKPLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQN
          110       120       130       140       150       160    

                40        50        60        70        80         
pF1KE0 -HLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ----LPKP
        .::  . .   : ...     . : . .:. .::. . ..  .  ..  .:    : . 
XP_005 GQLVRNDSLVTPSPQQARVCPPHMLPEDGANLSSARGILSLIQSSTRRAYQQILDVLDEN
          170       180       190       200       210       220    

          90       100       110       120       130       140     
pF1KE0 RMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRRQLYAVN
       :  :   .: .       . ...:.  .   . :.. . . ....:..   .:::.  .:
XP_005 R--RPVLRGGSAAATSNPHHDNVRYGIS---NIDTTIEGTSDDLTVVDAASLRRQIIKLN
            230       240       250          260       270         

         150       160       170       180   
pF1KE0 RRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
       :::. :::..    .:: .. .. :.  . : :::   
XP_005 RRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
     280       290       300       310       

>>XP_016860001 (OMIM: 614785,617086) PREDICTED: mitochon  (317 aa)
 initn: 133 init1: 133 opt: 142  Z-score: 172.0  bits: 39.2 E(85289): 0.0077
Smith-Waterman score: 142; 22.2% identity (55.7% similar) in 185 aa overlap (5-180:135-314)

                                         10        20            30
pF1KE0                           MAGGPPNTKAEMEMSLAEELNHGRQ-GEN---QE
                                     ::.:  . :.  . .:.. :. .::   :.
XP_016 STPFKPLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQN
          110       120       130       140       150       160    

                40        50        60        70        80         
pF1KE0 -HLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ----LPKP
        .::  . .   : ...     . : . .:. .::. . ..  .  ..  .:    : . 
XP_016 GQLVRNDSLVTPSPQQARVCPPHMLPEDGANLSSARGILSLIQSSTRRAYQQILDVLDEN
          170       180       190       200       210       220    

          90       100       110       120       130       140     
pF1KE0 RMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRRQLYAVN
       :  :   .: .       . ...:.  .   . :.. . . ....:..   .:::.  .:
XP_016 R--RPVLRGGSAAATSNPHHDNVRYGIS---NIDTTIEGTSDDLTVVDAASLRRQIIKLN
            230       240       250          260       270         

         150       160       170       180   
pF1KE0 RRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
       :::. :::..    .:: .. .. :.  . : :::   
XP_016 RRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
     280       290       300       310       

>>XP_016860004 (OMIM: 614785,617086) PREDICTED: mitochon  (243 aa)
 initn: 164 init1: 133 opt: 140  Z-score: 171.5  bits: 38.8 E(85289): 0.0082
Smith-Waterman score: 140; 23.7% identity (61.8% similar) in 131 aa overlap (52-180:114-240)

              30        40        50        60        70        80 
pF1KE0 HGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ
                                     :. : .:.:  . .:  . .:.:   ...:
XP_016 PLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVR---QNGQ
            90       100       110       120       130          140

                90       100       110       120       130         
pF1KE0 LPKPRML--RESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRR
       : .   :  : ..    ..... . ... .. :  . . :.. . . ....:..   .::
XP_016 LVRNDSLWHRSDSAPRNKISRFQAPISAPEYTYGIS-NIDTTIEGTSDDLTVVDAASLRR
              150       160       170        180       190         

     140       150       160       170       180   
pF1KE0 QLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
       :.  .::::. :::..    .:: .. .. :.  . : :::   
XP_016 QIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
     200       210       220       230       240   

>>NP_001263992 (OMIM: 614785,617086) mitochondrial fissi  (243 aa)
 initn: 164 init1: 133 opt: 140  Z-score: 171.5  bits: 38.8 E(85289): 0.0082
Smith-Waterman score: 140; 23.7% identity (61.8% similar) in 131 aa overlap (52-180:114-240)

              30        40        50        60        70        80 
pF1KE0 HGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ
                                     :. : .:.:  . .:  . .:.:   ...:
NP_001 PLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVR---QNGQ
            90       100       110       120       130          140

                90       100       110       120       130         
pF1KE0 LPKPRML--RESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRR
       : .   :  : ..    ..... . ... .. :  . . :.. . . ....:..   .::
NP_001 LVRNDSLWHRSDSAPRNKISRFQAPISAPEYTYGIS-NIDTTIEGTSDDLTVVDAASLRR
              150       160       170        180       190         

     140       150       160       170       180   
pF1KE0 QLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
       :.  .::::. :::..    .:: .. .. :.  . : :::   
NP_001 QIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
     200       210       220       230       240   

>>XP_005246743 (OMIM: 614785,617086) PREDICTED: mitochon  (269 aa)
 initn: 149 init1: 133 opt: 140  Z-score: 170.8  bits: 38.8 E(85289): 0.009
Smith-Waterman score: 140; 23.7% identity (61.8% similar) in 131 aa overlap (52-180:140-266)

              30        40        50        60        70        80 
pF1KE0 HGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ
                                     :. : .:.:  . .:  . .:.:   ...:
XP_005 PLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVR---QNGQ
     110       120       130       140       150       160         

                90       100       110       120       130         
pF1KE0 LPKPRML--RESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRR
       : .   :  : ..    ..... . ... .. :  . . :.. . . ....:..   .::
XP_005 LVRNDSLWHRSDSAPRNKISRFQAPISAPEYTYGIS-NIDTTIEGTSDDLTVVDAASLRR
        170       180       190       200        210       220     

     140       150       160       170       180   
pF1KE0 QLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
       :.  .::::. :::..    .:: .. .. :.  . : :::   
XP_005 QIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
         230       240       250       260         




183 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:27:58 2016 done: Fri Nov  4 01:27:58 2016
 Total Scan time:  5.740 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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