Result of FASTA (ccds) for
pF1KE0693
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0693, 282 aa
1>>>pF1KE0693 282 - 282 aa - 282 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9125+/-0.00129; mu= 2.1044+/- 0.079
mean_var=352.6993+/-73.124, 0's: 0 Z-trim(112.1): 129 B-trim: 0 in 0/51
Lambda= 0.068292
statistics sampled from 12812 (12926) to 12812 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.397), width: 16
Scan time: 2.530
The best scores are: opt bits E(32554)
CCDS5383.1 TRA2A gene_id:29896|Hs108|chr7 ( 282) 1933 203.7 1.2e-52
CCDS64609.1 TRA2A gene_id:29896|Hs108|chr7 ( 181) 1268 138.0 4.9e-33
CCDS75569.1 TRA2A gene_id:29896|Hs108|chr7 ( 180) 1249 136.1 1.8e-32
CCDS33905.1 TRA2B gene_id:6434|Hs108|chr3 ( 288) 1163 127.9 8.4e-30
CCDS58872.1 TRA2B gene_id:6434|Hs108|chr3 ( 188) 838 95.6 2.8e-20
>>CCDS5383.1 TRA2A gene_id:29896|Hs108|chr7 (282 aa)
initn: 1933 init1: 1933 opt: 1933 Z-score: 1058.6 bits: 203.7 E(32554): 1.2e-52
Smith-Waterman score: 1933; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)
10 20 30 40 50 60
pF1KE0 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR
190 200 210 220 230 240
250 260 270 280
pF1KE0 GYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
::::::::::::::::::::::::::::::::::::::::::
CCDS53 GYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
250 260 270 280
>>CCDS64609.1 TRA2A gene_id:29896|Hs108|chr7 (181 aa)
initn: 1268 init1: 1268 opt: 1268 Z-score: 706.6 bits: 138.0 E(32554): 4.9e-33
Smith-Waterman score: 1268; 100.0% identity (100.0% similar) in 181 aa overlap (102-282:1-181)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::::::::::::::::::::::::::::::
CCDS64 MSNRRRHTGSRANPDPNTCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
100 110 120 130 140 150
260 270 280
pF1KE0 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
:::::::::::::::::::::::::::::::
CCDS64 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
160 170 180
>>CCDS75569.1 TRA2A gene_id:29896|Hs108|chr7 (180 aa)
initn: 1236 init1: 1102 opt: 1249 Z-score: 696.5 bits: 136.1 E(32554): 1.8e-32
Smith-Waterman score: 1249; 99.4% identity (99.4% similar) in 181 aa overlap (102-282:1-180)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::::::::::::::::::::::::::::::
CCDS75 MSNRRRHTGSRANPDPNTCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
100 110 120 130 140 150
260 270 280
pF1KE0 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY
::::::: :::::::::::::::::::::::
CCDS75 YDYRYRR-SPSPYYSRYRSRSRSRSYSPRRY
160 170 180
>>CCDS33905.1 TRA2B gene_id:6434|Hs108|chr3 (288 aa)
initn: 986 init1: 800 opt: 1163 Z-score: 648.5 bits: 127.9 E(32554): 8.4e-30
Smith-Waterman score: 1189; 65.2% identity (78.7% similar) in 305 aa overlap (1-282:1-288)
10 20 30 40 50
pF1KE0 MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRV-SKHSESHSRSRSKSRSR
::: :.:. ::::: :.: .. . :: .. .:: :. :..:.:.:::::.::::
CCDS33 MSDSGEQNYGERESRSASRSGSAHGSG-KSARHTPARSRSKEDSRRSRSKSRSRSESRSR
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 SRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNT
::: :.:.::::::.:.:::: ::::::. .::::.:.::::::.::::.:.:::::::
CCDS33 SRRSSRRHYTRSRSRSRSHRR-SRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMER
:::::::::::::::::::::.:::.. :..::::.. ::::::::::: .::.::: ::
CCDS33 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 ANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYD
::::::::::::::.::::: :::::::::::::. :..:::: :::
CCDS33 ANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTY--------------GSSRRRD-YYD
180 190 200 210 220
240 250 260 270
pF1KE0 RGYDRGYDRYEDYD--YR------------------YRRRSPSPYYSR--YRSRSRSRSY
:::::::: . :. :: :::::::::::: ::::::::::
CCDS33 RGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY
230 240 250 260 270 280
280
pF1KE0 SPRRY
:::::
CCDS33 SPRRY
>>CCDS58872.1 TRA2B gene_id:6434|Hs108|chr3 (188 aa)
initn: 871 init1: 658 opt: 838 Z-score: 477.4 bits: 95.6 E(32554): 2.8e-20
Smith-Waterman score: 864; 68.5% identity (77.3% similar) in 203 aa overlap (102-282:1-188)
80 90 100 110 120 130
pF1KE0 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT
::.::::.:.::::::: ::::::::::::
CCDS58 MSTRRRHVGNRANPDPNCCLGVFGLSLYTT
10 20 30
140 150 160 170 180 190
pF1KE0 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR
:::::::::.:::.. :..::::.. ::::::::::: .::.::: ::::::::::::::
CCDS58 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE0 VDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYED
::.::::: :::::::::::::. :..:::: ::::::::::: .
CCDS58 VDFSITKRPHTPTPGIYMGRPTY--------------GSSRRRD-YYDRGYDRGYDDRDY
100 110 120 130
260 270 280
pF1KE0 YD--YR------------------YRRRSPSPYYSR--YRSRSRSRSYSPRRY
:. :: :::::::::::: :::::::::::::::
CCDS58 YSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
140 150 160 170 180
282 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:48:36 2016 done: Sat Nov 5 02:48:37 2016
Total Scan time: 2.530 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]