GENSCAN 1.0	Date run:  5-Nov-116	Time: 21:05:56

Sequence gi568815577f:38710035_38922886 : 212852 bp : 43.57% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +  12899  13073  175  2  1   51   38   160 0.349   4.53
 1.02 PlyA +  14049  14054    6                               1.05

 2.07 PlyA -  16111  16106    6                              -0.45
 2.06 Term -  17396  17310   87  2  0   49   53   105 0.312   0.76
 2.05 Intr -  28527  28276  252  0  0   16  100    89 0.145   0.53
 2.04 Intr -  30380  30282   99  2  0   90   95    18 0.548   3.01
 2.03 Intr -  31338  31287   52  2  1   76   89    49 0.574   2.71
 2.02 Intr -  42461  42173  289  0  1   52   75   198 0.725  11.20
 2.01 Init -  53352  53286   67  0  1   66   93    99 0.314   9.43
 2.00 Prom -  56192  56153   40                              -5.36

 3.00 Prom +  57613  57652   40                              -4.16
 3.01 Init +  66797  66845   49  1  1   51   82    34 0.163   0.21
 3.02 Intr +  76323  76392   70  1  1  102   24    99 0.024   3.14
 3.03 Intr +  79654  79807  154  1  1   78   94    17 0.012   1.37
 3.04 Intr +  85250  85350  101  1  2   83   60    49 0.114   0.51
 3.05 Intr +  86840  86882   43  2  1  148   52     2 0.555   0.84
 3.06 Intr +  88903  89019  117  0  0   29   80    79 0.511   1.86
 3.07 Intr +  95871  96086  216  2  0   81   90    84 0.613   6.60
 3.08 Intr + 100001 100072   72  1  0  111  113    62 0.978  10.60
 3.09 Intr + 102969 103080  112  2  1   84   46    66 0.971   1.95
 3.10 Intr + 104239 104358  120  2  0   64   89    87 0.806   6.87
 3.11 Intr + 104747 104947  201  0  0   93   76   201 0.999  18.66
 3.12 Intr + 106974 107057   84  1  0   98   68    14 0.532   0.19
 3.13 Intr + 108391 108612  222  2  0   96   99   186 0.996  18.60
 3.14 Intr + 109469 109732  264  0  0   50   89   294 0.992  23.18
 3.15 Intr + 111552 111670  119  1  2  135   64   114 0.998  13.88
 3.16 Term + 112640 112855  216  1  0   77   51   474 0.999  39.74
 3.17 PlyA + 114844 114849    6                               1.05

 4.00 Prom + 118646 118685   40                              -6.26
 4.01 Init + 119040 119042    3  2  0   74   89     0 0.456  -1.30
 4.02 Term + 119572 120684 1113  0  0   86   43   347 0.433  22.05
 4.03 PlyA + 125559 125564    6                               1.05

 5.06 PlyA - 127313 127308    6                               1.05
 5.05 Term - 128538 128105  434  1  2   78   42    71 0.193  -3.04
 5.04 Intr - 129204 129048  157  0  1   28   66   136 0.402   4.98
 5.03 Intr - 159364 159213  152  2  2  104   63    14 0.029   0.38
 5.02 Intr - 166887 166792   96  1  0   62   97    37 0.320   1.98
 5.01 Init - 167344 167278   67  1  1   35   87    45 0.366   0.33
 5.00 Prom - 174294 174255   40                              -4.16

 6.05 PlyA - 176137 176132    6                               1.05
 6.04 Term - 184991 184882  110  0  2  120   49    73 0.556   5.27
 6.03 Intr - 191931 191867   65  2  2  114   92    37 0.300   5.06
 6.02 Intr - 200656 200523  134  1  2   87   68   111 0.648   8.44
 6.01 Intr - 205065 204957  109  2  1   84   87    20 0.339   1.79

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  43056  43017   40  0  1   72   64    62 0.918   2.66
S.002 Term + 197237 197535  299  0  2   71   53   170 0.808   7.23


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577f:38710035_38922886|GENSCAN_predicted_peptide_1|58_aa
XVYSQTPRKTSSQHHGLGRREDRGRPLKTPSDRYIYPPPHLADQKASRQQRPRLHVCF

>gi568815577f:38710035_38922886|GENSCAN_predicted_CDS_1|177_bp
nnggtctacagccaaacacctaggaagaccagcagtcagcatcacgggctcggcagaaga
gaggacagaggacgcccgctgaaaaccccgagcgaccgctacatctacccaccaccacat
ctggctgatcaaaaggcctccagacagcaacggccacggcttcacgtctgcttttaa

>gi568815577f:38710035_38922886|GENSCAN_predicted_peptide_2|281_aa
MDSKAAKDWLTTKDLLEVTNVKERRGGKNANNLATRLFISNVVAFIPRIVLKDENWMERR
YSAKVEEQGSEQRETTQPKGSVISCHAQPSSIQSMQTDAYPELSQTPGGKLPFKVLMSRD
FKKLLKNPRGRWELLMSSNSLQYTYSFLGRSSCADRLQREGNCFTFIFLKAKEEKGTSYM
AAGKRACGGELLFIKPSDLMRLIHYHGKSMTEIAPVIQLIRLIHYHENSVREIASVIQLS
PPALDTRELLKFKEAPSEFADELDVRSERKREIKDDFKVST

>gi568815577f:38710035_38922886|GENSCAN_predicted_CDS_2|846_bp
atggacagcaaagcagccaaggactggctgaccactaaggacctgctggaggtaacaaat
gtgaaagaaaggagaggaggcaaaaatgcaaacaacttggcaaccaggttgttcatatcc
aacgtcgtggctttcatcccaagaatcgttctcaaagatgagaactggatggagaggcgc
tattccgctaaggtggaggaacagggctcggaacagagagaaaccacacagcccaagggc
agtgtcatctcctgccacgcacagccttcctccatccaatccatgcagactgacgcctac
cctgagctcagccagaccccgggagggaagctgcccttcaaagtgctcatgtccagggac
tttaagaagctgctgaagaacccaagaggaaggtgggagctgttgatgagcagtaatagt
ttacaatatacctacagtttcctgggcagatcatcgtgtgcagaccggctgcagagagaa
gggaactgtttcactttcatcttcctgaaggcaaaggaggagaaaggcacgtcttacatg
gcagcaggcaagagagcttgtggaggggaactcctatttataaaaccatcagatctcatg
agacttattcactaccacgggaagagtatgacagaaattgcccctgtgattcaattaata
agacttattcactatcacgagaacagtgtgagagaaattgcctccgtgattcaattatct
ccacctgcccttgacacacgggaattattaaaatttaaggaagcaccaagtgaatttgct
gatgaattggatgtgagaagtgagagaaagagagaaatcaaggatgactttaaggtttcg
acgtga

>gi568815577f:38710035_38922886|GENSCAN_predicted_peptide_3|719_aa
MLYCLKMKGGPEPKDAVCFWMLAVIQKHLLSTSYLLNEPTRLAGRLRCTWLLEVRSSHKR
TNTSFKGLGVCEQTWTSGLVEGLPGSILVAQGEKPSGNFEERGGVIGLTSPKATLAAVCR
VDSRRSLLVMRLDLFPGALDEKKETRRHDLLYLVKHSCYQETFTLRVEKGLPASRALWSA
PRGGRPGYFLQRLTSAVSLQLRAPGAARPASGLPDRLWPAPSPSPGAHRAAAGAEQPPSR
PSAGPARSGRMNDFGIKNMDQVAPVANSYRGTLKRQPAFDTFDGSLFAVFPSLNEEQTLQ
EVPTGLDSISHDSANCELPLLTPCSKAVMSQALKATFSGFKKEQRRLGIPKNPWLWSEQQ
VCQWLLWATNEFSLVNVNLQRFGMNGQMLCNLGKERFLELAPDFVGDILWEHLEQMIKEN
QEKTEDQYEENSHLTSVPHWINSNTLGFGTEQAPYGMQTQNYPKGGLLDSMCPASTPSVL
SSEQEFQMFPKSRLSSVSVTYCSVSQDFPGSNLNLLTNNSGTPKDHDSPENGADSFESSD
SLLQSWNSQSSLLDVQRVPSFESFEDDCSQSLCLNKPTMSFKDYIQERSDPVEQGKPVIP
AAVLAGFTGSGPIQLWQFLLELLSDKSCQSFISWTGDGWEFKLADPDEVARRWGKRKNKP
KMNYEKLSRGLRYYYDKNIIHKTSGKRYVYRFVCDLQNLLGFTPEELHAILGVQPDTED

>gi568815577f:38710035_38922886|GENSCAN_predicted_CDS_3|2160_bp
atgctatactgcttgaagatgaaggggggccctgagccaaaggatgcagtctgtttctgg
atgctggcagtcattcagaaacatttgctgagcacctcgtacctgctgaatgaacccacg
aggttggctggaaggctcagatgcacatggctgctggaagtgaggtcctcccacaagaga
accaacacgtccttcaagggtctcggggtctgtgaacagacatggacatcaggattggtt
gaggggcttccaggttcaatcctggtggcacagggtgagaaaccttctgggaattttgag
gagagaggtggcgtcataggattaacttctccaaaggctacattggctgctgtgtgcagg
gtggattctaggaggtcacttctcgtgatgagattggacttgtttcctggggctctggat
gaaaagaaagaaacgagaaggcacgacttgctgtatctagtcaaacattcttgctaccaa
gaaacattcacgctccgagtggagaaggggctgcctgcatctcgtgccctctggagcgcg
ccgcgtgggggacggcccggttacttcctccagagactgacgagtgcggtgtcgctccag
ctcagagctcccggagccgcccggccagcgtccggcctccctgatcgtctctggccggcg
ccctcgccctcgcccggcgcgcaccgagcagccgcgggcgccgagcagccaccgtcccga
ccaagcgccggccctgcccgcagcggcaggatgaatgatttcggaatcaagaatatggac
caggtagcccctgtggctaacagttacagagggacactcaagcgccagccagcctttgac
acctttgatgggtccctgtttgctgtttttccttctctaaatgaagagcaaacactgcaa
gaagtgccaacaggcttggattccatttctcatgactccgccaactgtgaattgcctttg
ttaaccccgtgcagcaaggctgtgatgagtcaagccttaaaagctaccttcagtggcttc
aaaaaggaacagcggcgcctgggcattccaaagaacccctggctgtggagtgagcaacag
gtatgccagtggcttctctgggccaccaatgagttcagtctggtgaacgtgaatctgcag
aggttcggcatgaatggccagatgctgtgtaaccttggcaaggaacgctttctggagctg
gcacctgactttgtgggtgacattctctgggaacatctggagcaaatgatcaaagaaaac
caagaaaagacagaagatcaatatgaagaaaattcacacctcacctccgttcctcattgg
attaacagcaatacattaggttttggcacagagcaggcgccctatggaatgcagacacag
aattaccccaaaggcggcctcctggacagcatgtgtccggcctccacacccagcgtactc
agctctgagcaggagtttcagatgttccccaagtctcggctcagctccgtcagcgtcacc
tactgctctgtcagtcaggacttcccaggcagcaacttgaatttgctcaccaacaattct
gggactcccaaagaccacgactcccctgagaacggtgcggacagcttcgagagctcagac
tccctcctccagtcctggaacagccagtcgtccttgctggatgtgcaacgggttccttcc
ttcgagagcttcgaagatgactgcagccagtctctctgcctcaataagccaaccatgtct
ttcaaggattacatccaagagaggagtgacccagtggagcaaggcaaaccagttatacct
gcagctgtgctggccggcttcacaggaagtggacctattcagctgtggcagtttctcctg
gagctgctatcagacaaatcctgccagtcattcatcagctggactggagacggatgggag
tttaagctcgccgaccccgatgaggtggcccgccggtggggaaagaggaaaaataagccc
aagatgaactacgagaagctgagccggggcttacgctactattacgacaagaacatcatc
cacaagacgtcggggaagcgctacgtgtaccgcttcgtgtgcgacctccagaacttgctg
gggttcacgcccgaggaactgcacgccatcctgggcgtccagcccgacacggaggactga

>gi568815577f:38710035_38922886|GENSCAN_predicted_peptide_4|371_aa
MVCQRSGSRKKENFRPISLMNIDAKILSKILANQIQQHIKNLIHHDQVGFIPGMQGWFNI
RKSINVIQHINRAKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDK
PTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVK
LSLFADDMTVYPENPIVSAQNLLKLRSNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSE
LPFTIASKRIKYLGIQLIRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMA
ILPKVIYRFNAIPIKLPMPFFTELEKTTLKFIWNQKRARITKSILSQKNKAGGITLPDFK
LHYKATVTKTA

>gi568815577f:38710035_38922886|GENSCAN_predicted_CDS_4|1116_bp
atggtttgtcaaagatcaggtagccgtaaaaaagagaattttagaccaatatccttgatg
aacattgatgcaaaaatcctcagtaaaatactggcaaaccaaatccagcagcacatcaaa
aaccttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaatata
cgcaaatcaataaatgtaatccagcatataaacagagccaaagacaaaaaccacatgatt
atctcaatagatgcagaaaaggcctttgacaaaattcaacaacccttcatgctaaaaact
ctcaataaattaggtatcgatggaacatatttcaaaataataagagctatctatgacaaa
cccacagctaatatcatactgaatgggcaaaaactggaagcattccctttgaaaactggc
acaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggcc
agggcaattaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtcaaa
ttgtccctgtttgcagatgacatgactgtatatccagaaaaccccattgtctcagcccaa
aatctccttaagctgagaagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaa
aaatcacaagcattcctatacaccaacaacagacaaacagagagccaaatcatgagtgaa
ctcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttataagggat
gtgaaggacctcttcaaggagaactacaaaccgctgctcaaggaaataaaagaggataca
aacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggcc
atactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgcctttc
ttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatc
accaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaa
ctacactacaaggctacagtaaccaaaacagcatga

>gi568815577f:38710035_38922886|GENSCAN_predicted_peptide_5|301_aa
MAVDICKTLLDGIPEIGAPTIEVRDGQPRKCPPKGRPVPWIVQEEDNTKARLFLVLPSPS
NVHKESQSEQMSQGQLRGPKSHSRGNCYCKNKGNLRRVCFPQTLLVGDKDQGQGLLHTHR
MQAEVWLHMKHAQVFGKRSTLAVCRHELEEVIVKWGPRNAPVPSTSPDPALYLSKDSCCS
TSHPAVGITWEQPGVSAPAARPDNLNLLSERSPSDSSTPSCVKSIGGSSYSFISVKLRDH
LLQRAFLDVPTLPSRLQRQLEHGAQLQQCAVATLVGTSSSSFFRSQDSSSLGSDDTTSSS
F

>gi568815577f:38710035_38922886|GENSCAN_predicted_CDS_5|906_bp
atggctgtagacatatgtaagacattattggatggtatacctgagattggagcacctaca
atagaagtgagggatggacagcccaggaagtgccctccaaagggccggcctgtcccatgg
attgtccaggaggaggacaacacaaaggcgaggttgtttctcgtgcttccttccccaagt
aatgttcacaaagagtcccaaagtgagcagatgtcccagggccaactgaggggccccaag
tcacactcaagagggaactgctattgcaagaacaaaggaaatctgcgcagggtttgcttc
ccccaaacgctcctggtaggagacaaggaccaaggtcaagggctgctgcacactcaccgc
atgcaggccgaggtctggcttcatatgaagcatgctcaggtctttggtaaaaggtccact
ctggctgtgtgcagacatgaattggaggaagtaatagtgaagtgggggcctagaaatgct
cctgtcccttcaacttccccggatcctgccctgtatttatcgaaggattcttgctgttcc
acatctcatcctgctgtaggcatcacctgggagcaacccggggtctcagctcctgctgca
agacctgataatctgaacctgcttagtgaaagatctccaagtgattcatctaccccttca
tgtgtgaaaagcattggaggtagctcctactcattcatcagtgttaagctcagggaccac
ctcctccagagagccttccttgatgttcccaccctccccagccggctgcagagacagttg
gagcatggggcacagctccagcaatgcgccgtggccaccttagtaggcacctctagctct
agtttcttcaggtcccaagacagttcttcactgggctcagatgacaccacatcctcctcc
ttttag

>gi568815577f:38710035_38922886|GENSCAN_predicted_peptide_6|139_aa
XTGKESGGAAAPGRLGPPLLTGTLMPVQLGSLDDRQKVASGFLPQAKCVASESDDLLLLE
MAGAILNVSGRFLQIPIDSGLSPLNMKMTRMKTFMMIHSHLLNRSLWNWRSDMAFHGCHR
GATMHRTSWASIAYIRPVE

>gi568815577f:38710035_38922886|GENSCAN_predicted_CDS_6|420_bp
nncacaggaaaagagagtggaggggctgctgccccaggaaggctgggcccacccctcctc
acaggcaccctgatgcctgttcagcttggctctctggatgacaggcagaaggtagcctcg
ggctttcttccacaagcgaagtgtgtggccagtgagtcagatgacctgctccttctggag
atggctggtgccattctcaatgtcagtggtcgcttcttacagatcccgatagattcaggc
ctcagcccactcaacatgaagatgacaaggatgaagacctttatgatgatccattcccac
ttactgaatagatctctgtggaactggagatcagacatggccttccatgggtgtcacagg
ggtgccaccatgcacagaacttcctgggccagcatcgcctacatcagacctgtggagtga