GENSCAN 1.0	Date run:  5-Nov-116	Time: 11:50:00

Sequence gi568815580f:3153248_3377934 : 224687 bp : 40.96% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.16 Intr -   1841   1700  142  0  1  112   21   193 0.131  13.49
 1.15 Intr -   3739   3651   89  0  2  103  -19    70 0.034  -3.50
 1.14 Intr -   6986   6767  220  0  1   34   13   355 0.056  19.04
 1.13 Intr -  11192  11031  162  0  0   46  107   137 0.995  10.43
 1.12 Intr -  12882  12712  171  1  0   47   64   110 0.470   3.49
 1.11 Intr -  15734  15570  165  0  0   67  113   158 0.996  15.21
 1.10 Intr -  20753  20691   63  0  0  105   87    51 0.953   4.47
 1.09 Intr -  20961  20873   89  2  2   88   56   173 0.993  12.80
 1.08 Intr -  22887  22795   93  2  0  110   86    87 0.983   8.86
 1.07 Intr -  34390  34233  158  1  2   60   68    45 0.025  -2.41
 1.06 Intr -  35939  35501  439  1  1   77   61   516 0.319  40.39
 1.05 Intr -  40711  40571  141  0  0   55  113    56 0.155   3.35
 1.04 Intr -  62004  61687  318  2  0  102   71   284 0.009  22.25
 1.03 Intr -  75834  75779   56  0  2   53   92    54 0.307  -0.84
 1.02 Intr -  77648  77518  131  0  2   34  108    58 0.328   1.89
 1.01 Init -  81546  81393  154  0  1   77   31   118 0.257   5.19
 1.00 Prom -  84794  84755   40                              -4.65

 2.06 PlyA -  85375  85370    6                               1.05
 2.05 Term -  88211  88048  164  0  2   96   44   112 0.936   4.72
 2.04 Intr -  88512  88395  118  0  1   88   22    99 0.860   2.42
 2.03 Intr -  91011  90820  192  0  0   45   32   260 0.868  14.87
 2.02 Intr -  93093  92828  266  1  2  -29   91   215 0.957   6.41
 2.01 Init -  94810  94462  349  1  1   90   37   283 0.855  20.79
 2.00 Prom -  95974  95935   40                              -7.65

 3.00 Prom +  96135  96174   40                              -7.65
 3.01 Init + 100001 100181  181  1  1   95   30   209 0.974  15.19
 3.02 Intr + 100642 100803  162  2  0   61  119   193 0.995  18.73
 3.03 Term + 102499 102671  173  2  2  106   44   267 0.999  21.11
 3.04 PlyA + 102854 102859    6                               1.05

 4.05 PlyA - 103313 103308    6                               1.05
 4.04 Term - 106354 106239  116  2  2   30   48   163 0.038   4.25
 4.03 Intr - 109068 108806  263  2  2   39   45   211 0.662   8.11
 4.02 Intr - 110136 110112   25  1  1   90   84    53 0.738   1.27
 4.01 Init - 113159 113078   82  2  1   47   45    82 0.558   0.98
 4.00 Prom - 118591 118552   40                              -6.45

 5.00 Prom + 118778 118817   40                              -7.05
 5.01 Init + 119652 119835  184  2  1   95   42   248 0.999  20.23
 5.02 Intr + 124006 124167  162  2  0   69  109   178 0.984  17.03
 5.03 Term + 124518 124690  173  1  2  129   48   276 0.999  24.71
 5.04 PlyA + 124908 124913    6                               1.05

 6.09 PlyA - 125240 125235    6                               1.05
 6.08 Term - 130388 130195  194  0  2  118   36    48 0.338  -0.80
 6.07 Intr - 130943 130722  222  0  0   51   60   155 0.141   6.18
 6.06 Intr - 131422 131368   55  1  1   84   94    10 0.124  -1.17
 6.05 Intr - 138950 138771  180  2  0   18   80   110 0.003   2.34
 6.04 Intr - 153017 152862  156  2  0   10   67   161 0.042   5.49
 6.03 Intr - 166313 166219   95  0  2   92   95    70 0.420   6.86
 6.02 Intr - 178351 178192  160  1  1   44  -15   148 0.015  -1.26
 6.01 Init - 180987 180934   54  0  0   70   95    91 0.986   9.33
 6.00 Prom - 193282 193243   40                              -6.05

 7.05 PlyA - 194475 194470    6                               1.05
 7.04 Term - 199551 199295  257  1  2   70   38   169 0.748   4.86
 7.03 Intr - 203652 203559   94  0  1   32    7   152 0.387   0.12
 7.02 Intr - 206121 205865  257  1  2   35   97   169 0.059   8.74
 7.01 Init - 216073 215989   85  1  1   80   81   130 0.685  12.53

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -   6986   6763  224  0  2   34   49   373 0.875  24.10
S.002 Init -  25254  25160   95  0  2   62   40    80 0.874   0.50
S.003 Intr -  32702  32640   63  2  0   70  101    65 0.813   4.00
S.004 Sngl -  53477  53178  300  2  0   44   36   241 0.874  10.04
S.005 Term -  62004  61578  427  2  1  102   53   330 0.934  24.69
S.006 Term - 178351 178187  165  1  0   44   49   150 0.969   3.63
S.007 Init - 206170 205865  306  1  0   79   97   184 0.804  15.75


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580f:3153248_3377934|GENSCAN_predicted_peptide_1|864_aa
MKLQNMQGKREMVKAARKKGSVFNGTIIRLAACFPVATVQAEGGTAIASKCCVQVLGIMN
KELDKMHKQSKDRMMQQKQRFIENESILHMVGAAQLLVLVNDWKFPGAQHLETRWPGSFK
GHRMSLPFYQRCHQHYDLSYRNKDVRSTVSHYQREKKRSAVYTQGSTAYSSRSSAAHRRE
SEAFRRASASSSQQQASQHALSSEVSRKAASAYDYGSSHGLTDSSLLLDDYSSKLSPKPK
RAKHSLLSGEEKENLPSDYMVPIFSGRIQCLRCGTLNLVKLLNLITAIHNIYILPLLCFS
QKHVSGITDTEEERIKEAAAYIAQRNLLASEEGITTSKQSTASKQTTASKQSTASKQSTA
SKQSTASRQSTASRQSVVSKQATSALQQEETSEKKSRKVVIREKAERLSLRKTLEETETY
HAKLNEDHLLHAPEFIIKPRSHTVWEKENVKLHCSIAGWPEPRVTWYKNQVPINVHANPG
KYIIESRYGMHTLEINGCDFEDTAQYRASAMNVKGELSAYASVVVKRYKGEFDETRFHAG
ASTMPLSFGVTPYGYASRFEIHFDDKFDVSFGREGETMSLGCRVVITPEIKHFQPEIQWY
RNVHNHFIFDLVFYTWSPVGLWHMHMIGGNTGMAVQTNVGAGSWAQWAVGSRQCEHQAAG
VPLSPSKWVQTLWSGERATLTFSHLNKEDEGLYTIRVRMGEYYEQYSAYVFVRAWVTERD
PVSKKRKKKKRERRRKGKEGKGRERKEEEEEEEKKKKEEEKKEEEEEKKKKEEEEEKEEE
EEKEKKNSALPLPSAAPLSAIQCSESLEGKKCLAGRDADAEIEGAPAAPLDVKCLEANKD
YIIISWKQPAVDGGSPILGYFIDN

>gi568815580f:3153248_3377934|GENSCAN_predicted_CDS_1|2592_bp
atgaagctgcagaacatgcagggtaaaagggaaatggtaaaagctgccagaaaaaaaggg
agtgtcttcaatggaacaataattaggctggcagcctgctttcctgtagcaaccgtgcaa
gctgaaggtggcacagcaatagcttcaaaatgctgtgtccaagttcttggcatcatgaac
aaagaattggacaaaatgcacaaacaaagcaaggacagaatgatgcaacaaaagcagaga
tttattgaaaatgaaagtatactccatatggtgggagcggcccaacttctagtcctggtg
aatgactggaaatttccaggtgctcaacacttagagaccaggtggcccggttccttcaag
gggcacaggatgtctttgcctttttatcagaggtgccaccagcactatgatctcagctac
cgcaacaaggacgtgcgcagcaccgtgagtcactaccagcgggagaagaaacgctccgcc
gtctacacccagggctccacggcctacagcagccgctcctccgccgcgcaccgccgggag
tccgaggccttccgtcgggcgtccgcctcctcctcccagcagcaggcctcgcagcacgcc
ctgagctctgaagtcagtcggaaggcagcctcagcctacgattatggctcctcccatgga
cttacagattccagtctgctgttagatgattattcatccaagttgagccccaaaccaaag
agagccaagcacagcctactgtctggagaagagaaagaaaatttgcccagtgactacatg
gtacccattttctcaggacggatacagtgtctgagatgtggtactttgaacttagtaaaa
ttactcaatcttatcactgccatccacaacatctacattttgccattgttgtgttttagt
caaaagcatgtcagtggaattactgatacggaagaagaaagaattaaagaagctgctgct
tatatagcccagaggaatcttcttgctagtgaggaaggaatcacaacatctaaacagtcc
acggcatccaagcagaccacggcatctaagcagtccacggcatccaagcagtccacagca
tccaagcagtccacggcatccaggcagtccacggcatccaggcagtctgtggtttccaaa
caggccacatccgctcttcaacaggaagaaacttctgaaaagaagtcaaggaaagttgtg
attcgagaaaaggcagaacgcctgtccctgaggaaaacattagaagaaaccgagacatat
catgccaagctgaatgaagaccatcttctccatgctcctgagtttatcattaaacctcgc
tcccacacggtttgggagaaggagaatgtaaaattgcattgctccatagcaggctggcca
gaacctcgtgtcacgtggtataaaaaccaggtgccaataaatgtccatgcaaaccctgga
aagtatattattgagagtcgatatgggatgcacactctggagattaatggatgtgatttt
gaagatacagctcagtaccgggcctcggcgatgaatgttaaaggagagctttcggcatat
gcttcagttgtggtaaaaaggtataagggagagtttgatgagactcgcttccacgctggg
gcttccaccatgcccctcagctttggtgtgaccccatatggttatgcatcccggtttgag
atccactttgatgacaaatttgatgtgtcttttgggagagagggagagacaatgagtcta
ggctgtcgtgttgtcatcactcctgaaattaaacatttccagccagagatccagtggtac
agaaacgttcataatcactttatctttgatcttgtgttttatacatggagtccagtggga
ctatggcacatgcacatgatcggaggaaatacgggaatggcagtgcagacaaatgtaggt
gcaggctcctgggcacagtgggcagtgggtagtaggcagtgtgagcaccaagctgcagga
gtacctctttctccatcaaaatgggtgcaaacactttggagtggagagcgggcaacgctg
acattttcccatctcaacaaagaagatgaaggcctctatacaatccgtgtacggatggga
gaatattatgaacaatatagtgcttatgtctttgttcgagcttgggtgacagaacgagac
cctgtctcaaaaaaaagaaagaaaaaaaagagagagagaagaagaaaaggaaaggaaggg
aagggaagggaaaggaaggaggaggaggaggaggaagagaagaagaagaaggaggaggag
aagaaggaggaggaggaagagaagaagaagaaggaggaggaggaggagaaggaggaggaa
gaggagaaggagaagaagaactctgctctgcctttgccatcagcagccccactctccgcc
atccagtgctctgaaagcctggaaggaaagaagtgtctcgccgggcgcgatgctgatgca
gagattgaaggagccccagctgctcccttggatgtgaagtgcttggaggccaacaaagat
tatatcatcatctcctggaaacagccagctgtcgatggagggagtcctattctcggatat
tttattgataan

>gi568815580f:3153248_3377934|GENSCAN_predicted_peptide_2|362_aa
MASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPL
RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCVGSY
RRGRGLSERAGSDGTNPRRLRGCVCSWSLRALAMHGHLHRVVACHHESTSSASVLSRGHF
RAERNGQFSLPLSLKAAFFCFSLSQWFSIVEEWWLGFALKEHLAMSGETVLLFTNGTDTA
SSGEKPGTLRNILLCTGRPSTTERYSAQKADAECLLLSRHTVQVVGVSITLWSGGQWSSS
HSSTEWGPSPTPCGSCQGLGLAPFEATARAVPWPLSAMAGAAGMQGTKSLGCLQHRDPGP
GP

>gi568815580f:3153248_3377934|GENSCAN_predicted_CDS_2|1089_bp
atggcctcggatcccagaaccggggacctggctggcacacctgcccaggtgcgctaccgg
cgccaggagccccgccgccctccagctgcccccgcggagacgggtccccgggatgggtct
cacgcgcccgaacgcgagcgccactcacccggcacagctacgagaatccgagcacctctc
cgagcccctcgctgccgctatcacaccaccctgctacccagagagccgctaaaaaccacc
gcttccggcctctgcttagcaagccggaaggaagcccggtcacctttcttggcccgcaga
gtgggtctgacttcacggaggggcgacagagagggaagtcgccagtgtgtgggctcttat
cggcgagggcggggactcagcgagagggctggcagcgacgggacaaaccccagacggctg
cgcggatgcgtttgttcctggagcttgcgagcacttgcaatgcatggacacctccacagg
gtggtggcctgccaccacgagagcaccagctccgccagcgtcctctccagaggacacttt
agagcagaaagaaacggacagttcagtcttcccctcagcttgaaggcagcattcttttgc
ttctctttgagtcagtggttctcaatagtggaggagtggtggttgggttttgccctgaag
gaacatttggcgatgtctggagagacagttttgcttttcacaaacgggacagatactgca
tctagtggggagaagccagggacgctgcgaaacatcctactatgcacaggacggccctcg
acaacagaacgttattcagcccaaaaagctgacgctgagtgtctgttgctttccaggcac
acagtgcaagttgtcggtgtatccatcactctgtggtctggaggacagtggtcctcttct
cacagctccactgagtggggccccagcccaacaccatgtggaagctgccaaggcttgggt
cttgcaccctttgaggccacggcccgagctgtaccttggcccctttcagccatggctgga
gcagctgggatgcagggcaccaagtccctaggctgcctgcagcatagggaccctggacct
ggcccatga

>gi568815580f:3153248_3377934|GENSCAN_predicted_peptide_3|171_aa
MSSKRTKTKTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASL
GKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQED
YLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD

>gi568815580f:3153248_3377934|GENSCAN_predicted_CDS_3|516_bp
atgtcgagcaaaagaacaaagaccaagaccaagaagcgccctcagcgtgcaacatccaat
gtgtttgctatgtttgaccagtcacagattcaggagttcaaagaggccttcaacatgatt
gatcagaacagagatggtttcatcgacaaggaagatttgcatgatatgcttgcttcattg
gggaagaatccaactgatgagtatctagatgccatgatgaatgaggctccaggccccatc
aatttcaccatgttcctcaccatgtttggtgagaagttaaatggcacagatcctgaagat
gtcatcagaaatgcctttgcttgctttgatgaagaagcaactggcaccatacaggaagat
tacttgagagagctgctgacaaccatgggggatcggtttacagatgaggaagtggatgag
ctgtacagagaagcacctattgataaaaaggggaatttcaattacatcgagttcacacgc
atcctgaaacatggagccaaagacaaagatgactga

>gi568815580f:3153248_3377934|GENSCAN_predicted_peptide_4|161_aa
MRVFGFVIIHLAAFALLCHGSLNRREPVIKRKAFTRRATGGGAGVRRRRPEGSREQSRAR
LTRRQTPEPGPPCARPQTTAKSVRLWPDSGGADTSCLKGRSGRRTGRRTGRRTGRRGGTK
WNGEKINCTREEDLIRHTQVWHIGPAQEIESELFQNPLVPN

>gi568815580f:3153248_3377934|GENSCAN_predicted_CDS_4|486_bp
atgagggtgtttggctttgtcataatacaccttgcagcttttgccctgctctgtcatgga
tcactcaatcggcgggagccagttataaaacgcaaagccttcacaaggcgcgcgacggga
gggggcgcgggggtacggagacggcggcccgaggggtctcgcgagcagagtcgagcgcga
ctcacccgacgccaaacaccagaaccggggccgccctgcgcgagaccacaaacgacagcg
aagagcgttaggctgtggccggacagtggcggcgccgacacttcctgcctgaaggggcgg
agcggaaggcgcaccggaaggcgcaccggaaggcgcaccggaaggcgcggcgggaccaag
tggaacggggaaaaaataaactgtacccgtgaagaggacctaattcgacacacacaagtc
tggcatattggacctgctcaggaaatcgaaagtgaactatttcagaatccactagtacca
aactga

>gi568815580f:3153248_3377934|GENSCAN_predicted_peptide_5|172_aa
MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
LGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD

>gi568815580f:3153248_3377934|GENSCAN_predicted_CDS_5|519_bp
atgtcgagcaaaaaggcaaagaccaagaccaccaagaagcgccctcagcgtgcaacatcc
aatgtgtttgccatgtttgaccagtcacagattcaggagttcaaagaggccttcaacatg
attgatcagaacagagatggcttcatcgacaaggaagatttgcatgatatgcttgcttct
ctagggaagaatcccactgatgcataccttgatgccatgatgaatgaggccccagggccc
atcaatttcaccatgttcctgaccatgtttggtgagaagttaaatggcacagatcctgaa
gatgtcatcagaaacgcctttgcttgctttgatgaagaagcaacaggcaccattcaggaa
gattacctaagagagctgctgacaaccatgggggatcggtttacagatgaggaagtggat
gagctgtacagagaagcacctattgacaaaaaggggaatttcaattacatcgagttcaca
cgcatcctgaaacatggagccaaagacaaagatgactga

>gi568815580f:3153248_3377934|GENSCAN_predicted_peptide_6|371_aa
MSKELKGRLEAVKGGGEMVIVKIESDNHHESTLKSQACSVSIRNKGDSDWLCSTYSAPLA
AHGSPVPLEMLKRDISLEQGGTTAELTSVTVLPRKFSDTTSFPGFSKCVGMPITHTRQQA
DLGRGPEETEDKKQQSRGSDELRSEGEEPEPYLLRTSKGQGQRKDPKSSKRKKQITYNGA
PIHLAADFSVETLQAKKEWCDIFKVLKKKTFYPKMVLTAGPSHPQSVISVSFTGLANAAS
LTMSPDLHGQPGFAGLSSVAAVDWQWALLRPSPPQGRMGLLPICQATQGPQLCMASPSDK
EGFLLLFDPCLFLLTSLVFSYPRGRGEEQRRTQGQFQNKRKSSGVGWGRQIPLPDKRGET
TVAKKKPGLRG

>gi568815580f:3153248_3377934|GENSCAN_predicted_CDS_6|1116_bp
atgtcaaaggagctgaagggaagactcgaggcagtaaaaggaggaggagagatggtcatc
gtgaaaattgaaagtgataatcaccatgaaagtactctgaaaagtcaagcatgctctgtg
agtataaggaataagggagacagtgattggctctgcagcacctattcagctcctctggct
gctcatggctctcccgtgcccttggaaatgctcaagcgtgacatctccctggagcaaggt
gggaccactgctgagctcacatcagtcactgtacttcctaggaagttttctgatacaacg
tcatttcctggtttctcaaaatgtgtgggaatgccaataacacacactcggcagcaggct
gaccttgggcgagggccagaggagacagaagacaagaagcaacagagcagaggaagcgat
gagctcaggtctgagggagaggaaccagagccttatctgctgcgtacttccaaaggtcaa
ggacaaagaaaggatcctaaaagcagcaagagaaagaaacaaataacatacaatggagct
ccaatacatctggcagcagacttctcagtggaaaccttacaggccaagaaggagtggtgt
gacatatttaaagtgctaaagaaaaaaaccttttatcctaaaatggtcctcacggccggc
ccatcccaccctcaatctgttatcagtgtctctttcacaggcctggccaatgctgccagc
ctgacaatgagcccggatttgcacggccagcccggatttgcaggtctctccagtgtggcc
gctgtggactggcagtgggctctcctccgcccctcccctccacagggcaggatgggcttg
cttcccatctgccaggcaactcagggtccgcagctctgcatggcaagcccatcagataaa
gagggattcctgctcttgtttgatccttgtcttttcctgttgacatccttggtgttttca
tacccacggggaagaggagaagagcagcgcagaactcaagggcaattccaaaacaaaagg
aaaagctctggagttgggtggggcagacagatcccactgcctgataaacggggtgagacc
acagtggctaagaagaagcctggattaagaggctag

>gi568815580f:3153248_3377934|GENSCAN_predicted_peptide_7|230_aa
MVLASAFGEGSRELTIMAEGEGEAAVSHGKCCAAVPLGGNPTLRVDQLWRKQRPPLQQCT
ASAPGGWVTSLMGAGTHAANTGFQLVWSSKRPMYKVLQAFFGVQRSDRSAMNGQSSVDRH
FDCFHTLAIVNKNAMDTEVQMFLRGGSGRRRLWQQAEQGALYSSPGASSQIPKCLYWKAR
TIAVVAGSLGTVEHKPGPTRKLGHALKNAKNTLLSPRAPEGRIQFTFASK

>gi568815580f:3153248_3377934|GENSCAN_predicted_CDS_7|693_bp
atggtgctggcctctgcttttggtgagggctccagggagcttacaatcatggcggaaggt
gaaggggaagctgctgtatcacatggaaagtgctgtgctgccgtgcccctcggtggaaat
cctacactgagagttgaccagctttggaggaagcagaggcctcccctgcagcagtgcaca
gcatcagcaccaggtggctgggtgacatccctcatgggagctgggactcacgcagccaat
acaggttttcagttggtttggtcctcgaagaggccaatgtataaggttttgcaggccttc
tttggtgttcagagatctgatagatcagccatgaatgggcagtcatctgttgatcgacac
tttgactgtttccataccttggcaattgtgaataagaatgcaatggacacggaagtgcag
atgtttctacgaggtggcagtggccgcagaagactctggcagcaggcagagcagggagcc
ctgtacagtagtcctggtgcctcgtcacagatcccaaagtgcctttactggaaggctagg
actattgcagttgttgcagggtccctggggactgtcgaacataagcctggccccacaaga
aaactgggccacgcactgaagaatgcaaagaacactcttctgtctcccagagctccagag
ggaagaatccagttcacttttgcttccaaatga