GENSCAN 1.0	Date run:  6-Nov-116	Time: 23:00:31

Sequence gi568815597f:39959347_40171530 : 212184 bp : 43.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   3381   4058  678  2  0   28   46   945 0.789  80.49
 1.02 PlyA +   4098   4103    6                              -0.45

 2.00 Prom +   4860   4899   40                              -8.36
 2.01 Init +   5276   5301   26  1  2   81   57    -9 0.350  -5.54
 2.02 Intr +   5865   5988  124  0  1  127  113   184 0.993  25.39
 2.03 Intr +   6125   6203   79  1  1   64   78    77 0.969   3.42
 2.04 Intr +   6511   6668  158  2  2   99   89    41 0.993   5.03
 2.05 Intr +   7255   7345   91  0  1   70   94    86 0.997   6.97
 2.06 Intr +   7465   7586  122  2  2   97  101   192 0.999  21.61
 2.07 Intr +   7740   7823   84  2  0   62  101    63 0.970   5.02
 2.08 Intr +   8282   8365   84  1  0  113   70    61 0.986   6.82
 2.09 Intr +   8458   8570  113  0  2   84   82   132 0.999  11.38
 2.10 Intr +   8988   9131  144  0  0   74   64   176 0.787  13.20
 2.11 Intr +   9223   9399  177  1  0   73  105   278 0.999  27.03
 2.12 Term +  10159  10222   64  1  1  131   49    50 0.993   2.76
 2.13 PlyA +  14539  14544    6                               1.05

 3.00 Prom +  37701  37740   40                              -2.36
 3.01 Init +  95450  95457    8  1  2  114   91     0 0.662   3.40
 3.02 Intr +  99991 100112  122  1  2   65  121    77 0.416   8.84
 3.03 Intr + 100721 100824  104  0  2   73   75   100 0.744   7.09
 3.04 Intr + 102389 102466   78  1  0   91  100    45 0.980   5.75
 3.05 Intr + 104881 105024  144  0  0   99   89   105 0.997  12.18
 3.06 Intr + 105128 105213   86  1  2  101   75    91 0.891   7.72
 3.07 Intr + 107026 107069   44  1  2  124   37     6 0.293  -3.02
 3.08 Intr + 108288 108371   84  1  0  117  101    36 0.360   7.59
 3.09 Intr + 110344 110528  185  2  2   22   89   129 0.405   5.91
 3.10 Intr + 110813 110936  124  1  1   60   95   125 0.999  10.56
 3.11 Intr + 111084 111166   83  1  2  114   93   104 0.999  12.86
 3.12 Intr + 111490 111633  144  0  0  124   78   123 0.999  15.38
 3.13 Term + 112104 112187   84  2  0  130   47    91 0.999   6.85
 3.14 PlyA + 113243 113248    6                               1.05

 4.07 PlyA - 113384 113379    6                               1.05
 4.06 Term - 114837 114715  123  0  0  115   47    79 0.987   4.88
 4.05 Intr - 117567 117496   72  0  0  101   93    -4 0.657   1.00
 4.04 Intr - 119312 119214   99  2  0   95   78   186 0.988  18.61
 4.03 Intr - 121141 121051   91  0  1  113  102   106 0.999  14.50
 4.02 Intr - 130166 130064  103  0  1   31   92   133 0.443   7.23
 4.01 Init - 137892 137769  124  0  1  106   92   175 0.948  18.03
 4.00 Prom - 153061 153022   40                              -2.16

 5.04 PlyA - 157440 157435    6                               1.05
 5.03 Term - 174066 173813  254  1  2   40   38   208 0.309   6.80
 5.02 Intr - 175592 175416  177  0  0    2    4   243 0.197   7.19
 5.01 Init - 181872 181851   22  0  1   74   77    21 0.228  -1.16
 5.00 Prom - 188206 188167   40                              -4.26

 6.04 PlyA - 188366 188361    6                               1.05
 6.03 Term - 202230 202012  219  0  0   96   41   179 0.129  11.04
 6.02 Intr - 203766 203638  129  0  0   85   93     5 0.131   1.59
 6.01 Init - 207911 207894   18  2  0   78  116    43 0.245   5.44

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 202054 202290  237  0  0  101   94   236 0.806  21.51


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:39959347_40171530|GENSCAN_predicted_peptide_1|225_aa
MPVTKLGRLVKDMKIKSLQEIYLFSLPIKGSEIIDFFLGASLKDEVLKIMPVQKQTRAGQ
RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKISKPHTV
PCKVTGRCGSVLVRLIPAPRSTGIVSTPVPKKLLMMAGIDDCYTSARGCTATLGSFAKGT
FDAISKTYSYLTPDLWKETVFTKSPDQEFTDHLIKTHQAPAVATT

>gi568815597f:39959347_40171530|GENSCAN_predicted_CDS_1|678_bp
atgcctgtcaccaagctgggccgcttggtgaaggacatgaagatcaagtccctgcaggag
atctatctcttctctctgcccattaagggatctgagatcattgactttttcctgggggcc
tctctcaaggatgaggttttgaagattatgccagtgcagaagcagacccgtgccggccag
cgcaccaggttcaaggcgtttgttgctatcggagactacaatggccatgtcggtctgggt
gttaagtgctccaaggaggtggccaccgccatccgtggggccatcatcctggccaagctc
tccattgtccccgtgcgcagaggctactgggggaacaagatcagcaagccccacaccgtc
ccttgcaaggtgacaggccgctgcggctctgtgctggtgcgtctcatccctgcacccagg
agcactggcatcgtctccacacctgtgcccaagaagctgctcatgatggctggtatcgat
gactgctacacctcagcccggggctgcactgccaccctgggcagctttgccaagggcacc
tttgatgccatctctaagacctacagctacctgacccccgacctctggaaggagactgta
ttcaccaagtctcccgatcaggaattcactgaccacctcatcaagacccaccaggctcca
gctgtggctacaacatag

>gi568815597f:39959347_40171530|GENSCAN_predicted_peptide_2|421_aa
MPASLCVNGIIFSTPLAVIAYFLIWFVPDFPHGQTYWYLLFYCLFETMVTCFHVPYSALT
MFISTEQTERDSATAYRMTVEVLGTVLGTAIQGQIVGQADTPCFQDLNSSTVASQSANHT
HGTTSHRETQKAYLLAAGVIVCIYIICAVILILGVREQREPYEAQQSEPIAYFRGLRLVM
SHGPYIKLITGFLFTSLAFMLVEGNFVLFCTYTLGFRNEFQNLLLAIMLSATLTIPIWQW
FLTRFGKKTAVYVGISSAVPFLILVALMESNLIITYAVAVAAGISVAAAFLLPWSMLPDV
IDDFHLKQPHFHGTEPIFFSFYVFFTKFASGVSLGISTLSLDFAGYQTRGCSQPERVKFT
LNMLVTMAPIVLILLGLLLFKMYPIDEERRRQNKKALQALRDEASSSGCSETDSTELASI
L

>gi568815597f:39959347_40171530|GENSCAN_predicted_CDS_2|1266_bp
atgccagcttccctgtgtgtgaatgggatcatcttctccacgcccctggccgtcattgcc
tacttcctcatctggttcgtgcccgacttcccacacggccagacctattggtacctgctt
ttctattgcctctttgaaacaatggtcacgtgtttccatgttccctactcggctctcacc
atgttcatcagcaccgagcagactgagcgggattctgccaccgcctatcggatgactgtg
gaagtgctgggcacagtgctgggcacggcgatccagggacaaatcgtgggccaagcagac
acgccttgtttccaggacctcaatagctctacagtagcttcacaaagtgccaaccataca
catggcaccacctcacacagggaaacgcaaaaggcatacctgctggcagcgggggtcatt
gtctgtatctatataatctgtgctgtcatcctgatcctgggcgtgcgggagcagagagaa
ccctatgaagcccagcagtctgagccaatcgcctacttccggggcctacggctggtcatg
agccacggcccatacatcaaacttattactggcttcctcttcacctccttggctttcatg
ctggtggaggggaactttgtcttgttttgcacctacaccttgggcttccgcaatgaattc
cagaatctactcctggccatcatgctctcggccactttaaccattcccatctggcagtgg
ttcttgacccggtttggcaagaagacagctgtatatgttgggatctcatcagcagtgcca
tttctcatcttggtggccctcatggagagtaacctcatcattacatatgcggtagctgtg
gcagctggcatcagtgtggcagctgccttcttactaccctggtccatgctgcctgatgtc
attgacgacttccatctgaagcagccccacttccatggaaccgagcccatcttcttctcc
ttctatgtcttcttcaccaagtttgcctctggagtgtcactgggcatttctaccctcagt
ctggactttgcagggtaccagacccgtggctgctcgcagccggaacgtgtcaagtttaca
ctgaacatgctcgtgaccatggctcccatagttctcatcctgctgggcctgctgctcttc
aaaatgtaccccattgatgaggagaggcggcggcagaataagaaggccctgcaggcactg
agggacgaggccagcagctctggctgctcagaaacagactccacagagctggctagcatc
ctctag

>gi568815597f:39959347_40171530|GENSCAN_predicted_peptide_3|429_aa
MPRWSIMADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGP
VAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKE
VITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKD
VMGSTGFLDFSTTKVFSTISCSYESASRSSLFAQINQGESITHALKHVSDDMKTHKNPAL
KAQSGPVRSGPKPFSAPKPQTSPSPKRATKKEPAVLELEGKKWRVENQENVSNLVIEDTE
LKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVP
TISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKL
VTTVTEIAG

>gi568815597f:39959347_40171530|GENSCAN_predicted_CDS_3|1290_bp
atgcccaggtggtccattatggctgacatgcaaaatctggtagaaagattggagagggca
gtgggccgcctggaggcagtatctcatacctctgacatgcaccgtgggtatgcagacagt
ccttcaaaagcaggagcagctccatatgtgcaggcatttgactcgctgcttgctggtcct
gtggcagagtacttgaagatcagtaaagagattgggggagacgtgcagaaacatgcggag
atggtccacacaggtttgaagttggagcgagctctgttggttacagcttctcagtgtcaa
cagccagcagaaaataagctttccgatttgttggcacccatctcagagcagatcaaagaa
gtgataacctttcgggagaagaaccgaggcagcaagttgtttaatcacctgtcagctgtc
agcgaaagtatccaggccctgggctgggtggctatggctcccaagcctggcccttatgtg
aaagaaatgaatgatgccgccatgttttatacaaaccgagtcctcaaagagtacaaagat
gtcatggggtccacaggtttcttagacttcagcactaccaaagtcttctctaccatttca
tgctcatatgagtctgcttcccgctcatcactgttcgcgcagattaatcagggggagagc
attacacatgccctgaaacatgtatctgatgacatgaagactcacaagaaccctgccctg
aaggctcagagtggtccagtacgcagtggccccaaaccattctctgcacctaaaccccaa
accagcccatcccccaaacgagccacaaagaaggagccagctgtacttgaactggagggc
aagaagtggagagtggaaaatcaggaaaatgtttccaacctggtgattgaggacacagag
ctgaaacaggtggcttacatatacaagtgtgtcaacacgacattgcaaatcaagggcaaa
attaactccattacagtagataactgtaagaaacttggcctggtattcgatgacgtggtg
ggcattgtggagataatcaacagtaaggatgtcaaagttcaggtaatgggtaaagtgcca
accatatccatcaacaaaacagatggctgccatgcttacctgagcaagaattccctggat
tgtgaaatagtcagtgccaaatcttccgagatgaatgtcctcattcctacagaaggcggt
gactttaatgaattcccagttcctgagcagttcaagaccctatggaacgggcagaagttg
gtcaccacagtgacagaaattgctggataa

>gi568815597f:39959347_40171530|GENSCAN_predicted_peptide_4|203_aa
MASPGCLWLLAVALLPWTCASRALQHLDPPAPLPLVIWHGMGVFGLPRCPGESSHICDFI
RKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALK
KFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFL
ATEGDHLQLSEEWFYAHIIPFLG

>gi568815597f:39959347_40171530|GENSCAN_predicted_CDS_4|612_bp
atggcgtcgcccggctgcctgtggctcttggctgtggctctcctgccatggacctgcgct
tctcgggcgctgcagcatctggacccgccggcgccgctgccgttggtgatctggcatggg
atgggtgtttttggactccctcgatgcccaggagagagctctcacatctgtgacttcatc
cgaaaaacactgaatgctggggcgtactccaaagttgttcaggaacgcctcgtgcaagcc
gaatactggcatgaccccataaaggaggatgtgtatcgcaaccacagcatcttcttggca
gatataaatcaggagcggggtatcaatgagtcctacaagaaaaacctgatggccctgaag
aagtttgtgatggtgaaattcctcaatgattccattgtggaccctgtagattcggagtgg
tttggattttacagaagtggccaagccaaggaaaccattcccttacaggagacctccctg
tacacacaggaccgcctggggctaaaggaaatggacaatgcaggacagctagtgtttctg
gctacagaaggggaccatcttcagttgtctgaagaatggttttatgcccacatcatacca
ttccttggatga

>gi568815597f:39959347_40171530|GENSCAN_predicted_peptide_5|150_aa
MAKPAAQAWVTEQDPVEEEKKEEKETEKEKGKEEEEEEEDEETYYEIQVILSMRKKKRRR
RRRRRPSHEASVGSLGDKGSHNLKAPKAEGPEQGGSVLVVLVEANEDMVGAQLLLGELLE
NCKAILAPLGQRTTRNLRCRGCRRSARLAS

>gi568815597f:39959347_40171530|GENSCAN_predicted_CDS_5|453_bp
atggcaaagcctgcagctcaagcctgggtgacagaacaagaccctgttgaagaagaaaag
aaggaggagaaggagacagagaaggagaaggggaaagaggaggaggaggaagaggaggat
gaggagacctactatgagattcaagtgattcttagtatgaggaagaagaagaggaggagg
aggaggaggaggagacctagccatgaagcaagtgtcgggtctcttggggacaaggggtct
cacaatctcaaagccccaaaagctgaaggtccggagcaaggcggctctgtcctcgtggtt
cttgtggaagcaaatgaagacatggtcggcgctcagctgctcctcggcgaactgctggag
aactgcaaagctatcctcgctcccctggggcagcgcaccaccaggaatctccgatgcaga
ggctgccgccgctcagcacggctcgccagttaa

>gi568815597f:39959347_40171530|GENSCAN_predicted_peptide_6|121_aa
MAINLKLIVFPIRISHEGSLLTIVSTTPPFPSLPKPHWKYCHSYHLPPTLCLQLPQTRPQ
SRGSRRWRYGAMTPNHGLSLDSISGSRYRRSLSPSPGDSGGVSLSVRHLPTAHQRVGNQA
T

>gi568815597f:39959347_40171530|GENSCAN_predicted_CDS_6|366_bp
atggccatcaacctcaagttaattgtctttcccatcaggatatcccatgaaggctctctc
ctcaccattgtctctacaacacctccttttccatcattaccaaaaccgcactggaaatac
tgtcattcctaccacctcccaccaactctctgtctccagctgccacagacacggccgcag
tcccgaggctcccggcgctggagatacggggcgatgaccccgaaccatggactcagtctc
gactccatctccggctcccgctaccgccggagcctcagccccagccccggcgacagcggc
ggcgtctccctttccgtccgccatcttcccacggcccaccagcgcgtaggcaaccaagcc
acgtga