Result of FASTA (omim) for pF1KB8923
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8923, 270 aa
  1>>>pF1KB8923 270 - 270 aa - 270 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2073+/-0.00035; mu= 0.0914+/- 0.022
 mean_var=266.2149+/-54.597, 0's: 0 Z-trim(123.4): 183  B-trim: 2100 in 1/56
 Lambda= 0.078606
 statistics sampled from 42948 (43185) to 42948 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.506), width:  16
 Scan time:  8.430

The best scores are:                                      opt bits E(85289)
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 1854 222.4 7.2e-58
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 1066 133.0 5.7e-31
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  529 72.1 1.2e-12
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  529 72.1 1.2e-12
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  527 71.8 1.4e-12
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222)  524 71.5 1.6e-12
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  519 71.0   3e-12
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  515 70.5 3.5e-12
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  480 66.5   5e-11
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224)  480 66.5   5e-11
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  480 66.5   5e-11
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288)  480 66.6   6e-11
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235)  467 65.0 1.4e-10
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233)  462 64.4 2.1e-10
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153)  458 63.8 2.2e-10
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217)  435 61.4 1.7e-09
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230)  434 61.3 1.9e-09
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  376 54.9 2.9e-07
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  376 54.9 2.9e-07
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  376 54.9 2.9e-07
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  376 54.9 2.9e-07
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  376 54.9 2.9e-07
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  376 54.9 2.9e-07
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  376 54.9 2.9e-07
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301)  363 53.3 6.2e-07
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352)  364 53.5 6.4e-07
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290)  362 53.2 6.5e-07
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242)  360 52.9 6.7e-07
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243)  360 52.9 6.7e-07
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243)  360 52.9 6.7e-07
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289)  360 53.0 7.6e-07
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106)  341 50.4 1.6e-06
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242)  344 51.1 2.3e-06
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376)  334 50.1 7.1e-06
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  333 50.0 7.4e-06
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  333 50.0 7.4e-06
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  330 49.6 8.2e-06
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335)  331 49.7 8.2e-06
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  333 50.1 8.4e-06
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  333 50.1 8.4e-06
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  333 50.1 8.4e-06
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  333 50.1 8.4e-06
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  333 50.1 8.4e-06
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  333 50.1 8.4e-06
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 50.2   1e-05
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 50.2   1e-05
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 50.2   1e-05
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 50.2   1e-05
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 50.2   1e-05
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  333 50.2   1e-05


>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo  (270 aa)
 initn: 1854 init1: 1854 opt: 1854  Z-score: 1160.0  bits: 222.4 E(85289): 7.2e-58
Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KB8 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK
              190       200       210       220       230       240

              250       260       270
pF1KB8 IWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
       ::::::::::::::::::::::::::::::
NP_061 IWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
              250       260       270

>>NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [Homo  (269 aa)
 initn: 951 init1: 560 opt: 1066  Z-score: 677.0  bits: 133.0 E(85289): 5.7e-31
Smith-Waterman score: 1066; 62.3% identity (78.3% similar) in 281 aa overlap (1-270:1-269)

               10        20        30        40        50        60
pF1KB8 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
       ::::::::: ::::::::::: :::. ::.: ..:: :.::.: :::.::::::::.::.
NP_002 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS
               10        20        30        40        50        60

                  70        80        90       100       110       
pF1KB8 --SGHFGS-GERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHG
         :.:::. :: .:.. : :.    :::. : :.:    .:. :::.      ..::: :
NP_002 ASSSHFGAVGESSRAFPAPAQ----EPRFRQAASSCSLSSPESLPCT------NGDSH-G
               70        80            90       100                

       120       130       140       150          160           170
pF1KB8 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPA---SSEQASAQSEP----SPAP
       .: : :. :  ...:.:.   ..   ..::.  :.: .   :   : :: ::    . ::
NP_002 AKPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAP
     110       120       130       140       150       160         

               180       190       200       210       220         
pF1KB8 PAQ-PQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIA
        .: :::.::::::::::: . ::.:::::::::::::::::::::::::::::::::::
NP_002 EGQTPQIFPWMRKLHISHD-MTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIA
     170       180        190       200       210       220        

     230       240       250       260       270
pF1KB8 HALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
       :::::::::::::::::::::::::::::::.:.::.::.:
NP_002 HALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
      230       240       250       260         

>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo  (264 aa)
 initn: 586 init1: 382 opt: 529  Z-score: 348.0  bits: 72.1 E(85289): 1.2e-12
Smith-Waterman score: 529; 49.2% identity (64.9% similar) in 185 aa overlap (96-267:54-231)

          70        80        90       100               110       
pF1KB8 SGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP--------CSAVAPSPGSDSHHG
                                     : : : :        :...  .::..  ::
NP_705 SQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-GPGNSRGHG
            30        40        50        60        70         80  

       120       130       140       150       160       170       
pF1KB8 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY
              ..:      :  .     .. ::..   :: .  :  : ..:: :   :: .:
NP_705 -----PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP-APDHPSSAASKQPIVY
                  90       100       110       120        130      

       180         190       200       210       220       230     
pF1KB8 PWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS
       :::.:.:.:  . : .: : ::.:::::: :.::::::::.::::::::::::::.::::
NP_705 PWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS
        140       150       160       170       180       190      

         240       250          260       270                      
pF1KB8 ERQIKIWFQNRRMKWKKDNKL---KSMSMAAAGGAFRP                      
       ::::::::::::::::::..:   :  :   ::.:                         
NP_705 ERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQ
        200       210       220       230       240       250      

NP_705 RAEDITRL
        260    

>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo  (264 aa)
 initn: 586 init1: 382 opt: 529  Z-score: 348.0  bits: 72.1 E(85289): 1.2e-12
Smith-Waterman score: 529; 49.2% identity (64.9% similar) in 185 aa overlap (96-267:54-231)

          70        80        90       100               110       
pF1KB8 SGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP--------CSAVAPSPGSDSHHG
                                     : : : :        :...  .::..  ::
NP_055 SQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-GPGNSRGHG
            30        40        50        60        70         80  

       120       130       140       150       160       170       
pF1KB8 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY
              ..:      :  .     .. ::..   :: .  :  : ..:: :   :: .:
NP_055 -----PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP-APDHPSSAASKQPIVY
                  90       100       110       120        130      

       180         190       200       210       220       230     
pF1KB8 PWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS
       :::.:.:.:  . : .: : ::.:::::: :.::::::::.::::::::::::::.::::
NP_055 PWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS
        140       150       160       170       180       190      

         240       250          260       270                      
pF1KB8 ERQIKIWFQNRRMKWKKDNKL---KSMSMAAAGGAFRP                      
       ::::::::::::::::::..:   :  :   ::.:                         
NP_055 ERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQ
        200       210       220       230       240       250      

NP_055 RAEDITRL
        260    

>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo  (251 aa)
 initn: 514 init1: 396 opt: 527  Z-score: 347.1  bits: 71.8 E(85289): 1.4e-12
Smith-Waterman score: 536; 44.3% identity (61.0% similar) in 228 aa overlap (49-267:23-234)

       20        30        40        50        60        70        
pF1KB8 YQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARS-YAASA
                                     :.  :   .  . :....:.: .: .   :
NP_076         MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEA
                       10        20        30        40        50  

            80        90       100       110       120       130   
pF1KB8 S----AAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAG
       .    :: .  ::.  :    .: : : :     : ::          ::  . :   ::
NP_076 GFGRRAACTVQRYA--ACRDPGPPPPPPPPPPPPPPPG----------LSPRAPAPPPAG
             60          70        80                  90       100

           140       150       160       170         180           
pF1KB8 STHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPA--QPQIYPWMRKLHIS--HDN
       .         :    :  ..:     :.   .:::.  :  .: .::::::.:.:  . :
NP_076 ALLPEP----GQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPN
                  110       120       130       140       150      

     190       200       210       220       230       240         
pF1KB8 IGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK
        .: : ::.:::::: :.::::::::.:::::::::.:::::::::::::::::::::::
NP_076 YAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMK
        160       170       180       190       200       210      

     250       260       270              
pF1KB8 WKKDNKLKSMSMAAAGGAFRP              
       ::::.:: . .. ..:.:                 
NP_076 WKKDHKLPNTKIRSGGAAGSAGGPPGRPNGGPRAL
        220       230       240       250 

>>NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [Homo  (222 aa)
 initn: 523 init1: 410 opt: 524  Z-score: 345.9  bits: 71.5 E(85289): 1.6e-12
Smith-Waterman score: 625; 45.9% identity (66.4% similar) in 259 aa overlap (1-258:1-218)

               10        20        30        40        50        60
pF1KB8 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
       :::: .:::  . :: : :.... :...:.::       ....:: ::  :.:::.    
NP_061 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASE-------VQASRYCYG--GLDLSITFPP
               10        20        30               40          50 

               70        80        90       100        110         
pF1KB8 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAP-SPGSDSHHGGK
        .  .:  .. ..::.  : : .:  :  :.  :.:  :      .:: .::  :.....
NP_061 PAPSNS-LHGVDMAANPRAHPDRPACSAAAAPGHAPGRD-----EAAPLNPGMYSQKAAR
               60        70        80             90       100     

     120       130       140       150       160       170         
pF1KB8 NSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPW
        .:                  :  . .::  ..  :.. : .. :.: ::::   :::::
NP_061 PAL------------------EERAKSSGEIKEEQAQTGQPAGLSQP-PAPP---QIYPW
                           110       120       130           140   

     180       190       200       210       220       230         
pF1KB8 MRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQI
       : :::.::..    .:::.::.::::::::::::::::::::::::::::. :::.::::
NP_061 MTKLHMSHET----DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQI
           150           160       170       180       190         

     240       250       260       270
pF1KB8 KIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
       ::::::::::::::.:.::            
NP_061 KIWFQNRRMKWKKDSKMKSKEAL        
     200       210       220          

>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo  (320 aa)
 initn: 491 init1: 393 opt: 519  Z-score: 340.8  bits: 71.0 E(85289): 3e-12
Smith-Waterman score: 519; 46.3% identity (66.2% similar) in 201 aa overlap (73-267:90-287)

             50        60        70        80         90       100 
pF1KB8 GRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPR-YSQPATSTHSPQPDPL
                                     : : ..:  : :  :   :.  . :::.  
NP_002 LPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQP
      60        70        80        90       100       110         

             110       120         130       140        150        
pF1KB8 PCSAVAPSPGSDSHHGGKNSLSN--SSGASADAGSTHISSREGV-GTASGAEEDAPASSE
       : .: .:. :  . :  . .:    .  :   :.  .  .  .. :. .:.  .:::   
NP_002 PAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGG--SAPACPL
     120       130       140       150       160       170         

      160       170       180         190       200       210      
pF1KB8 QASAQSEPSPAPPAQPQIYPWMRKLHISHDN--IGGPEGKRARTAYTRYQTLELEKEFHF
         . .: :      .: .::::.:.:.:  :   .: : ::.:::::: :.:::::::::
NP_002 LLADKS-PLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHF
       180        190       200       210       220       230      

        220       230       240       250       260       270      
pF1KB8 NRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP      
       ::::::::::::::.:::::::.::::::::::::::.:: . .: ....:         
NP_002 NRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGK
        240       250       260       270       280       290      

NP_002 AQTQSPHLHPHPHPSTSTPVPSSI
        300       310       320

>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo  (255 aa)
 initn: 442 init1: 414 opt: 515  Z-score: 339.6  bits: 70.5 E(85289): 3.5e-12
Smith-Waterman score: 515; 46.6% identity (65.7% similar) in 204 aa overlap (62-256:27-215)

              40        50        60        70        80        90 
pF1KB8 EQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPAT
                                     :..:  . :  :...:..:  .:    :. 
NP_055     MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGE-QGADYYGGGAQGADFQP----PGL
                   10        20        30         40            50 

               100       110       120       130       140         
pF1KB8 STHSPQPD--PLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGA
           :.::    : .. .:.:::     :...  .. :.       : ..      :  :
NP_055 ---YPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGG-------HYAAPGEPCPAPPA
                 60        70        80               90       100 

     150       160       170            180         190       200  
pF1KB8 EEDAPASSEQASAQSEPSPAPPA----QPQI-YPWMRKLHIS--HDNIGGPEGKRARTAY
          ::  . .: .::.:.  : .    :: . ::::.:.:..  . :  : : ::.::::
NP_055 PPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAY
             110       120       130       140       150       160 

            210       220       230       240       250       260  
pF1KB8 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMA
       :: :.:::::::::::::::::::::::.::::::::::::::::::::::.::      
NP_055 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGR
             170       180       190       200       210       220 

            270                          
pF1KB8 AAGGAFRP                          
                                         
NP_055 SSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
             230       240       250     

>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei  (224 aa)
 initn: 528 init1: 448 opt: 480  Z-score: 318.9  bits: 66.5 E(85289): 5e-11
Smith-Waterman score: 482; 46.0% identity (67.4% similar) in 187 aa overlap (95-264:30-215)

           70        80        90       100          110       120 
pF1KB8 GSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPL---PCSAVAPSPGSDSHHGGKNS
                                     :   :::   : .  .:.::.:.  . .. 
XP_005  MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYP-APYGPGPGQDKGFATSSY
                10        20        30        40         50        

                  130       140         150         160       170  
pF1KB8 LSNSSG-----ASADAGSTHISSRE--GVGTASGAEEDAPASSE--QASAQSEPSPAPPA
          ..:     :  : : .    ::  .. . :::.:. :   :  ...  .. :    .
XP_005 YPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGET
       60        70        80        90       100       110        

                 180       190       200       210       220       
pF1KB8 QPQ-----IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE
       . :     .::::....  ...  :: :.:.: .::::::::::::::.:::::::::::
XP_005 EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE
      120       130       140       150       160       170        

       230       240       250       260       270   
pF1KB8 IAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP   
       :::::::.:::::::::::::::::..:: : :. .:         
XP_005 IAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
      180       190       200       210       220    

>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo  (224 aa)
 initn: 528 init1: 448 opt: 480  Z-score: 318.9  bits: 66.5 E(85289): 5e-11
Smith-Waterman score: 482; 46.0% identity (67.4% similar) in 187 aa overlap (95-264:30-215)

           70        80        90       100          110       120 
pF1KB8 GSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPL---PCSAVAPSPGSDSHHGGKNS
                                     :   :::   : .  .:.::.:.  . .. 
NP_061  MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYP-APYGPGPGQDKGFATSSY
                10        20        30        40         50        

                  130       140         150         160       170  
pF1KB8 LSNSSG-----ASADAGSTHISSRE--GVGTASGAEEDAPASSE--QASAQSEPSPAPPA
          ..:     :  : : .    ::  .. . :::.:. :   :  ...  .. :    .
NP_061 YPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGET
       60        70        80        90       100       110        

                 180       190       200       210       220       
pF1KB8 QPQ-----IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE
       . :     .::::....  ...  :: :.:.: .::::::::::::::.:::::::::::
NP_061 EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE
      120       130       140       150       160       170        

       230       240       250       260       270   
pF1KB8 IAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP   
       :::::::.:::::::::::::::::..:: : :. .:         
NP_061 IAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
      180       190       200       210       220    




270 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:02:32 2016 done: Sat Nov  5 20:02:33 2016
 Total Scan time:  8.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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