GENSCAN 1.0	Date run:  5-Nov-116	Time: 14:09:45

Sequence gi568815578f:43573805_43816084 : 242280 bp : 46.58% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1105   1200   96  0  0   65  105   121 0.996  11.71
 1.02 Intr +   2420   2575  156  1  0  103   28   217 0.905  17.41
 1.03 Intr +   6168   6257   90  2  0   78   83    48 0.836   3.49
 1.04 Intr +  10786  10803   18  0  0  105   70    37 0.503   0.41
 1.05 Term +  11048  11212  165  1  0   60   43   182 0.993   8.82
 1.06 PlyA +  13841  13846    6                               1.05

 2.00 Prom +  20203  20242   40                              -0.76
 2.01 Init +  20895  21013  119  2  2  105   47   153 0.747  12.57
 2.02 Intr +  40046  40172  127  2  1   99   87    10 0.193   2.68
 2.03 Intr +  45136  45222   87  0  0   72  103    49 0.947   4.97
 2.04 Intr +  47053  47121   69  0  0   81   59    44 0.437   0.18
 2.05 Term +  50087  50263  177  1  0   75   52   287 0.814  21.49
 2.06 PlyA +  51331  51336    6                              -1.75

 3.00 Prom +  51404  51443   40                              -5.56
 3.01 Init +  51640  51645    6  0  0  104  101    10 0.106   4.21
 3.02 Intr +  63341  63449  109  1  1  132   84    62 0.985  10.06
 3.03 Intr +  68675  68820  146  0  2   73   92   140 0.871  12.90
 3.04 Term +  73132  73179   48  0  0   92   49    51 0.807  -1.10
 3.05 PlyA +  73828  73833    6                              -0.45

 4.00 Prom +  76308  76347   40                              -5.76
 4.01 Init +  78719  78894  176  1  2   83   52   126 0.991   7.32
 4.02 Intr +  93248  93403  156  2  0   68    1   117 0.445   0.13
 4.03 Intr +  95681  95752   72  2  0   92   97    10 0.599   0.82
 4.04 Intr + 100002 100095   94  0  1  105  105   137 0.993  17.07
 4.05 Intr + 107980 108051   72  0  0   92   76    98 0.921   8.60
 4.06 Intr + 113048 113268  221  1  2   -6   99   423 0.071  31.10
 4.07 Intr + 118353 118515  163  0  1   94   94   235 0.991  24.68
 4.08 Intr + 125953 126240  288  0  0   85   88   355 0.953  32.64
 4.09 Intr + 128686 129099  414  0  0   74   96   436 0.963  37.30
 4.10 Intr + 131415 131554  140  2  2   78   66   167 0.961  12.76
 4.11 Intr + 136159 136258  100  1  1   83   92   159 0.634  15.91
 4.12 Intr + 137684 137797  114  1  0   72   84   227 0.949  21.34
 4.13 Intr + 139198 139302  105  0  0   94   87   157 0.998  16.61
 4.14 Intr + 141330 141479  150  2  0   80   76   170 0.995  15.36
 4.15 Term + 142155 142283  129  2  0   94   51   137 0.893   8.78
 4.16 PlyA + 142659 142664    6                               1.05

 5.06 PlyA - 144549 144544    6                               1.05
 5.05 Term - 148228 148091  138  1  0   69   44   130 0.243   4.66
 5.04 Intr - 152831 152612  220  1  1   38   19   309 0.004  17.30
 5.03 Intr - 162317 162171  147  1  0  110   69    25 0.364   2.15
 5.02 Intr - 163512 163407  106  1  1   47   83    67 0.463   1.37
 5.01 Init - 169248 169197   52  0  1   93   80    17 0.345   2.72
 5.00 Prom - 171194 171155   40                              -3.26

 6.06 PlyA - 171769 171764    6                               1.05
 6.05 Term - 181990 181883  108  1  0  102   43    66 0.217   2.01
 6.04 Intr - 192990 192807  184  2  1   90    8   114 0.193   3.39
 6.03 Intr - 193385 193225  161  2  2   44   72    49 0.190  -2.31
 6.02 Intr - 194096 193949  148  1  1   75   86    67 0.229   5.44
 6.01 Init - 203797 203739   59  1  2   81  111     9 0.304   3.28
 6.00 Prom - 211330 211291   40                              -3.26

 7.00 Prom + 218479 218518   40                              -2.96
 7.01 Init + 241563 242274  712  2  1   88   58   494 0.960  41.47

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  79295  79490  196  2  1   22   54   176 0.995   4.48
S.002 Init +  88828  88835    8  0  2  114   91     0 0.804   3.40
S.003 Init + 112991 113268  278  1  2   62   99   436 0.927  36.56
S.004 Init + 155263 155323   61  0  1   78  106    72 0.826   9.41
S.005 Term + 155591 155712  122  0  2   61   48    85 0.850   0.44


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:43573805_43816084|GENSCAN_predicted_peptide_1|174_aa
YLAPEVLRKEPYDRAVDWWCLGAVLYEMLHGLPPFYSQDVSQMYENILHQPLQIPGGRTV
AACDLLQSLLHKDQRQRLGSKADFLEIKNHVFFSPINWDDLYHKRLTPPFNPNVRHEQYL
TGPADLKHFDPEFTQEAVSKSIGCTPDTVASSSGASSAFLGFSYAPEDDDILDC

>gi568815578f:43573805_43816084|GENSCAN_predicted_CDS_1|525_bp
tacttggcacctgaagtgcttcggaaagagccttatgatcgagcagtggactggtggtgc
ttgggggcagtcctctacgagatgctccatggcctgccgcccttctacagccaagatgta
tcccagatgtatgagaacattctgcaccagccgctacagatccccggaggccggacagtg
gccgcctgtgacctcctgcaaagccttctccacaaggaccagaggcagcggctgggctcc
aaagcagactttcttgagattaagaaccatgtattcttcagccccataaactgggatgac
ctgtaccacaagaggctaactccacccttcaacccaaatgtgcgccacgaacagtacctg
acaggacctgctgacttgaagcattttgacccagagttcacccaggaagctgtgtccaag
tccattggctgtacccctgacactgtggccagcagctctggggcctcaagtgcattcctg
ggattttcttatgcgccagaggatgatgacatcttggattgctag

>gi568815578f:43573805_43816084|GENSCAN_predicted_peptide_2|192_aa
MEKELRSTILFNAYKKEIFTTNNGYKSMQKKLRSNWKIQRALTFVYPFGATLSVMKPAVA
VLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYLDKEENSKIMDVVFQWLTT
GDIHLNQIDAEDPEISDYMMLPYTATLSKRNRECLQESDEIPRDFTTLFDLSIFQLDTTS
FHSVIESVPVGL

>gi568815578f:43573805_43816084|GENSCAN_predicted_CDS_2|579_bp
atggagaaagagctgcggagcaccattcttttcaatgcctacaaaaaggagatatttacc
accaacaatggctacaaatccatgcagaaaaaacttcggagtaattggaagattcagagg
gctctcacctttgtgtatccttttggtgccacattgagtgtcatgaaaccagcagtggcg
gttctgtctacaggttctgtctgcttcccacttaacagacccattttggctttctatcac
tcaaagaaccaaggtgggaagctggcagtgcttggttcatgtcacatgttcagtgatcaa
tatttggacaaagaagaaaacagcaaaatcatggatgttgttttccagtggctcacgaca
ggagacatccacctaaaccagattgatgctgaggacccagagatttctgactacatgatg
ctgccctacacagccaccctatcaaagcggaatcgagagtgtctccaggagagtgatgag
atcccaagggactttaccaccctcttcgacctgtccatcttccagctggataccacctcc
ttccacagcgtcatcgagtcagtacctgtgggcctctga

>gi568815578f:43573805_43816084|GENSCAN_predicted_peptide_3|102_aa
MAVFPPSFRELPPPPLELFDLDETFSSEKARLAQITNKCTEEDLEFYVRKCGDILGVTSK
LPKDQQDAKHILEHVFFQVVEFKKLNQEHDIDTSETAFQNNF

>gi568815578f:43573805_43816084|GENSCAN_predicted_CDS_3|309_bp
atggcggtttttcctcccagtttccgggagttaccacctcctcctctggagctatttgat
ttagatgaaacgttctcctctgagaaggcacggctggctcagattaccaataagtgtact
gaagaagacctggaattttatgtcaggaagtgtggtgatattcttggagtaaccagtaaa
ctaccaaaggaccaacaggatgccaaacatatccttgagcacgtcttcttccaagtggtg
gagttcaagaaattgaaccaggaacatgacatcgatacaagtgaaacagcattccagaac
aatttctga

>gi568815578f:43573805_43816084|GENSCAN_predicted_peptide_4|797_aa
MPSRLRKTQKLRGHVSHGHGRIGKLQKHPRGHSNAGGMHHHRINFNKYYPGYFGKVGMRT
GRRRRAWREIEKCFNPRRRRLQFLRARSAGPADTLTPSSAARGPERPEQPGAPLPALSLT
HPCPGAEPSTLKGKSEDLDELHYQDTDSDVPEQRDSKCKVKWTHEEDEQLRALVRQFGQQ
DWKFLASHFPVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEED
RIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESKDCKPPVYLL
LELEDKDGLQSAQPTEGQGSLLTNWPSVPPTIKEEENSEEELAAATTSKEQEPIGTDLDA
VRTPEPLEEFPKREDQEGSPPETSLPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWC
DLSKFDLPEEPSAEDSINNSLVQLQASHQQQVLPPRQPSALVPSVTEYRLDGHTISDLSR
SSRGELIPISPSTEVGGSGIGTPPSVLKRQRKRRVALSPVTENSTSLSFLDSCNSLTPKS
TPVKTLPFSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQKHAAF
VTPDQKYSMDNTPHTPTPFKNALEKYGPLKPLPQTPHLEEDLKEVLRSEAGIELIIEDDI
RPEKQKRKPGLRRSPIKKVRKSLALDIVDEDVKLMMSTLPKSLSLPTTAPSNSSSLTLSG
IKEDNSLLNQGFLQAKPEKAAVAQKPRSHFTTPAPMSSAWKTVACGGTRDQLFMQEKARQ
LLGRLKPSHTSRTLILS

>gi568815578f:43573805_43816084|GENSCAN_predicted_CDS_4|2394_bp
atgccatccagactgaggaagacccagaaacttcggggccatgtgagccatggccatggc
cgcataggcaagctccaaaagcaccccagaggccacagtaatgctggtggaatgcatcac
cacaggatcaacttcaacaaatactacccaggttactttgggaaagttggtatgaggact
gggcggcgccgacgcgcttggcgggagatagaaaagtgcttcaacccgcgccggcggcga
ctgcagttcctgcgagcgaggagcgcgggacctgctgacacgctgacgccttcgagcgcg
gcccggggcccggagcggccggagcagcccggtgccccacttcccgctttgtctctgact
cacccctgtcctggagcagagcccagcacgttgaagggcaaaagcgaggatctggatgag
ctgcactaccaggacacagattcagatgtgccggagcagagggatagcaagtgcaaggtc
aaatggacccatgaggaggacgagcagctgagggccctggtgaggcagtttggacagcag
gactggaagttcctggccagccacttccctgtcatcgagctggttaagaagtatggcaca
aagcagtggacactgattgccaagcacctgaagggccggctggggaagcagtgccgtgaa
cgctggcacaaccacctcaaccctgaggtgaagaagtcttgctggaccgaggaggaggac
cgcatcatctgcgaggcccacaaggtgctgggcaaccgctgggccgagatcgccaagatg
ttgccagggaggacagacaatgctgtgaagaatcactggaactctaccatcaaaaggaag
gtggacacaggaggcttcttgagcgagtccaaagactgcaagcccccagtgtacttgctg
ctggagctcgaggacaaggacggcctccagagtgcccagcccacggaaggccagggaagt
cttctgaccaactggccctccgtccctcctaccataaaggaggaggaaaacagtgaggag
gaacttgcagcagccaccacatcgaaggaacaggagcccatcggtacagatctggacgca
gtgcgaacaccagagcccttggaggaattcccgaagcgtgaggaccaggaaggctcccca
ccagaaacgagcctgccttacaagtgggtggtggaggcagctaacctcctcatccctgct
gtgggttctagcctctctgaagccctggacttgatcgagtcggaccctgatgcttggtgt
gacctgagtaaatttgacctccctgaggaaccatctgcagaggacagtatcaacaacagc
ctagtgcagctgcaagcgtcacatcagcagcaagtcctgccaccccgccagccttccgcc
ctggtgcccagtgtgaccgagtaccgcctggatggccacaccatctcagacctgagccgg
agcagccggggcgagctgatccccatctcccccagcactgaagtcgggggctctggcatt
ggcacaccgccctctgtgctcaagcggcagaggaagaggcgtgtggctctgtcccctgtc
actgagaatagcaccagtctgtccttcctggattcctgtaacagcctcacgcccaagagc
acacctgttaagaccctgcccttctcgccctcccagtttctgaacttctggaacaaacag
gacacattggagctggagagcccctcgctgacatccaccccagtgtgcagccagaaggtg
gtggtcaccacaccactgcaccgggacaagacacccctgcaccagaaacatgctgcgttt
gtaaccccagatcagaagtactccatggacaacactccccacacgccaaccccgttcaag
aacgccctggagaagtacggacccctgaagcccctgccacagaccccgcacctggaggag
gacttgaaggaggtgctgcgttctgaggctggcatcgaactcatcatcgaggacgacatc
aggcccgagaagcagaagaggaagcctgggctgcggcggagccccatcaagaaagtccgg
aagtctctggctcttgacattgtggatgaggatgtgaagctgatgatgtccacactgccc
aagtctctatccttgccgacaactgccccttcaaactcttccagcctcaccctgtcaggt
atcaaagaagacaacagcttgctcaaccagggcttcttgcaggccaagcccgagaaggca
gcagtggcccagaagccccgaagccacttcacgacacctgcccctatgtccagtgcctgg
aagacggtggcctgcggggggaccagggaccagcttttcatgcaggagaaagcccggcag
ctcctgggccgcctgaagcccagccacacatctcggaccctcatcttgtcctga

>gi568815578f:43573805_43816084|GENSCAN_predicted_peptide_5|220_aa
MGQCGWCAERIGRKRMPGWNCQRPYDAGQASPKVELSPQGFLALPRKEFKGQSLTCTSRM
NYLYLKSHLRVYFWKNSSIIPVELHKTEKLKAAGGREANATSRFQYHLASCRRKNPKKAK
KMATCKYNACHVVPIKNLEEHEAVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQGPLQL
PKSQLPTQASSSTEQAGTLPYWTGLQLPKLQLWIQAFPCS

>gi568815578f:43573805_43816084|GENSCAN_predicted_CDS_5|663_bp
atgggccagtgtggctggtgtgcagagaggataggaaggaagcgcatgccaggatggaac
tgccaaagaccttatgatgcagggcaggcaagccccaaagtggagctcagtccacaaggg
ttcttggctttgcccaggaaagaattcaagggccagagccttacctgcacttcccgaatg
aactacttatatctgaaatctcatcttagggtctacttctggaagaactctagcataata
ccagtagaactccacaaaactgaaaagctcaaagcagcaggtggcagagaagcaaatgcc
accagcagattccagtaccacctggcatcgtgcaggagaaagaaccccaagaaagccaaa
aagatggccacctgcaaatacaacgcctgccacgtggtccccatcaaaaatctggaggaa
catgaggctgtttgtgtcaacaggagcgctgtggaagaagaggacaccgagaaccctctg
aaagtcagtcctcctagttcagagcagaacgatgacacccagcaggggccgctgcagctg
cccaaatctcagctgccaacccaggcctccagctccacagagcaggcaggaaccctgccc
tactggacagggctgcagctgcccaaactgcagctgtggatccaagccttcccgtgctct
tag

>gi568815578f:43573805_43816084|GENSCAN_predicted_peptide_6|219_aa
MGPLLTSSIHRHDFFKGVDRFASTAARSSLAAENQKYSPFTSTGSLYLTNAAARNVSTAL
PRHLYPHSQSLIHPRVPECHRCARHCMGRSMVNGTDTVPLEAALFLAVPSRQDMCAQPRL
PSRAGANHSTSPSLNYLTNKMGTIAVAVREGPPIDSTNRDRAATICQALGVAVQSKEGDE
CRLLLLPQSDETLLFVRKGPKINPTAHVGDGTEEEVKKD

>gi568815578f:43573805_43816084|GENSCAN_predicted_CDS_6|660_bp
atgggccctttattaacttccagcatccacaggcatgacttcttcaagggagttgaccgg
tttgccagcacagctgccagaagctctctcgcagcagagaaccaaaaatacagcccattt
acttcaacaggctccctctacctgacaaatgcagcagccaggaatgtatccactgctctt
ccccggcatctatacccacattcccagtctctcattcacccaagggttcctgagtgtcac
cgctgtgcccggcattgcatggggaggagcatggtgaatgggacagacacggtccctctg
gaggcggctctcttcctggcagttcccagccgccaggacatgtgtgcccagcccagactc
cctagcagggctggggcaaatcactcaacatctccaagcctcaactacctcaccaacaaa
atggggacaatagcagtagctgtcagagaaggaccacctattgactccacaaatagagat
cgggcagctactatttgccaggcacttggggttgctgtgcagagcaaagagggtgatgaa
tgccggctcctgctactcccacaaagtgatgaaactttgctttttgtgagaaagggccct
aaaataaatccaactgctcatgttggtgatgggacagaagaagaagtgaagaaagattaa

>gi568815578f:43573805_43816084|GENSCAN_predicted_peptide_7|238_aa
MGKKQNRKTGNSKTQSASPPPKERSSSPATEQSWMENDFDELREEGFRRSNYSELREDIQ
TKGKEVENFEKNLEEYITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSA
MEDEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDAENGTKLENTLQD
IIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKX

>gi568815578f:43573805_43816084|GENSCAN_predicted_CDS_7|714_bp
atggggaaaaaacagaacagaaaaactggaaactctaaaacgcagagcgcctctcctcct
ccaaaggaacgcagttcctcaccagcaacggaacaaagctggatggagaatgattttgac
gagctgagagaagaaggcttcagacgatcaaattactctgagctacgggaggacattcaa
accaaaggcaaagaagttgaaaactttgaaaaaaatttagaagaatatataactagaata
accaatactgagaagtgcttaaaggagctgatggagctgaaaaccaaggctcgagaacta
cgtgaagaatgcagaagcctcaggagccgatgcgatcaactggaagaaagggtatcagca
atggaagatgaaatgaatgaaatgaagcgagaagggaagtttagagaaaaaagaataaaa
agaaatgagcaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctg
attggtgtacctgaaagtgatgcggagaatggaaccaagttggaaaacactctgcaggat
attatccaggagaacttccccaatctagcaaggcaggccaacgttcagattcaggaaata
cagagaacgccacaaagatactcctcgagaagagcaactccaagacacataattgtcaga
ttcaccaaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaagnn