GENSCAN 1.0	Date run:  8-Nov-116	Time: 09:37:56

Sequence gi568815596r:42251222_42461161 : 209940 bp : 40.86% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5280   5409  130  1  1   80   75   127 0.961   9.43
 1.02 Intr +  11957  12085  129  2  0   52  108   105 0.955   7.79
 1.03 Intr +  13485  13510   26  0  2  104   94    50 0.912   3.95
 1.04 Intr +  29629  29746  118  2  1   84  -12   105 0.169  -1.30
 1.05 Intr +  33413  33482   70  2  1   81   96    56 0.897   3.97
 1.06 Intr +  35048  35158  111  1  0  100   92    49 0.976   6.16
 1.07 Intr +  37006  37101   96  0  0   85   94    53 0.959   4.89
 1.08 Intr +  43904  44038  135  1  0   79   78    22 0.512   0.14
 1.09 Intr +  44160  44295  136  2  1   76   87    74 0.956   5.32
 1.10 Intr +  46252  46419  168  2  0   57   89    59 0.525   1.90
 1.11 Intr +  50020  50171  152  2  2   64   94    62 0.984   3.36
 1.12 Intr +  51883  52008  126  0  0   88  115    93 0.999  11.96
 1.13 Intr +  53263  53330   68  0  2  107   91    39 0.926   2.88
 1.14 Intr +  64741  64829   89  1  2   77   68    62 0.639   1.80
 1.15 Intr +  74933  75031   99  0  0   44   87    92 0.033   3.86
 1.16 Intr +  77665  77795  131  2  2   41   92    98 0.777   4.99
 1.17 Term +  78513  78986  474  2  0   56   41   483 0.997  34.30
 1.18 PlyA +  81296  81301    6                               1.05

 2.00 Prom +  81758  81797   40                              -6.85
 2.01 Init +  82180  82264   85  0  1   52   47    77 0.501   1.03
 2.02 Intr +  82389  82631  243  1  0   31   26   191 0.023   3.75
 2.03 Intr +  85199  85351  153  0  0   60   37    97 0.021   0.92
 2.04 Intr +  86572  86739  168  2  0   57  -11   219 0.005   7.90
 2.05 Intr +  90255  90378  124  1  1  115   31    68 0.003   2.52
 2.06 Intr +  91088  91192  105  2  0  123   96    28 0.057   5.51
 2.07 Intr +  92692  92827  136  1  1   47    2    96 0.181  -3.45
 2.08 Intr +  94874  95075  202  1  1  111   82   115 0.924  11.14
 2.09 Term +  97104  97243  140  1  2   50   42   108 0.347  -0.46
 2.10 PlyA +  98397  98402    6                               1.05

 3.07 PlyA -  98515  98510    6                               1.05
 3.06 Term - 100138  99998  141  1  0   72   44   193 0.998  10.25
 3.05 Intr - 102122 101991  132  2  0  126   94    97 0.997  14.02
 3.04 Intr - 110051 109869  183  2  0  -18   96   160 0.041   5.26
 3.03 Intr - 117924 117647  278  1  2   80  111    69 0.119   4.71
 3.02 Intr - 133725 133641   85  0  1   60   80    99 0.008   4.77
 3.01 Init - 147774 147712   63  0  0   51   72    77 0.134   3.60
 3.00 Prom - 148023 147984   40                              -3.25

 4.00 Prom + 149890 149929   40                              -6.85
 4.01 Init + 156369 156818  450  2  0   74   69   270 0.575  17.66
 4.02 Intr + 157775 157967  193  1  1   25   89    97 0.611   1.64
 4.03 Term + 160722 160936  215  1  2   21   44   163 0.634   1.61
 4.04 PlyA + 165001 165006    6                               1.05

 5.04 PlyA - 167308 167303    6                               1.05
 5.03 Term - 173952 173712  241  2  1   86   55   194 0.549  10.41
 5.02 Intr - 193358 192750  609  1  0  117   48   307 0.032  20.20
 5.01 Init - 194382 194264  119  0  2   70  105    62 0.703   5.85

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 193358 192713  646  1  1  117   38   296 0.942  20.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:42251222_42461161|GENSCAN_predicted_peptide_1|752_aa
XQPSPRAVIPMSCITNGSGANRKPSHTSAVSIAGKETLSSAAKSIKRPSPAEKSHNSWEN
SDDSRNKLSKIPSTPKLIPKVTKTADKHKDVIINQEGEYIKMFMRGRPITMFIPSDVDNY
DDIRTELPPEKLKLDLAIHPDKIRIATGQIAGVDKDGRPLQPHVRVWDSVTLSTLQIIGL
GTFERGVGCLDFSKADSGVHLCIIDDSNEHMLTVWDWQKKAKGAEIKTTNEVVLAVEFHP
TDANTIITCGKSHIFFWTWSGNSLTRKQGIFGKYEKPKFVQCLAFLGNGDVLTGDSGGVM
LIWSKTTVEPTPGKGPKGNRKSNLVNCWAHEMACVVLCHMTNPIMGKVAKNLRFSIGWEE
FGERSEINGSPDQSVYQISKQIKAHDGSVFTLCQMRNGMLLTGGGKDRKIILWDHDLNPE
REIEVPDQYGTIRAVAEGKADQFLVGTSRNFILRGTFNDGFQIEVQEPGHCADFHPSGTV
VAIGTHSGRWFVLDAETRDLVSIHTDGNEQLSVMRYSIGDIPNGCKLIRNRSDCKDIDWT
TYTCVLGFQVFGVWPEGSDGTDINALVRSHNRKVIAVADDFCKVHLFQYPCSKAKAPSHK
YSAHSSHVTNVSFTHNDSHLISTGGKDMSIIQWKLVEKLSLPQNETVADTTLTKAPVSST
ESVIQSNTPTPPPSQPLNETAEEESRISSSPTLLENSLEQTVEPSEDHSEEESEEGSGDL
GEPLYEEPCNEISKEQAKATLLEDQQDPSPSS

>gi568815596r:42251222_42461161|GENSCAN_predicted_CDS_1|2259_bp
ngccaaccaagccctcgagcagttattcccatgtcctgtataaccaatggaagtggtgca
aacagaaaaccaagtcataccagtgctgtctcaattgcaggaaaagaaactctttcatct
gctgctaaaagcataaaacgaccatcaccagctgaaaagtcacataattcttgggaaaat
tcagatgatagccgtaataaattgtcgaaaataccttcaacacccaaattaataccaaaa
gttaccaaaactgcagacaagcataaagatgtcatcatcaaccaagaaggagaatatatt
aaaatgtttatgcgcggtcggccaattaccatgttcattccttccgatgttgacaactat
gatgacatcagaacggaactgcctcctgagaagctcaaactggaccttgctatacatcct
gacaaaattaggattgcaactggacagatagctggcgtggataaagatggaaggcctcta
caaccccacgtcagagtgtgggattctgttactctatccacactgcagattattggactt
ggcacttttgagcgtggagtaggatgcctggatttttcaaaagcagattcaggtgttcat
ttatgtattattgatgactccaatgagcatatgcttactgtatgggactggcagaagaaa
gcaaaaggagcagaaataaagacaacaaatgaagttgttttggctgtggagtttcaccca
acagatgcaaataccataattacatgcggtaaatctcatattttcttctggacctggagc
ggcaattcactaacaagaaaacagggaatttttgggaaatatgaaaagccaaaatttgtg
cagtgtttagcattcttggggaatggagatgttcttactggagactcaggtggagtcatg
cttatatggagcaaaactactgtagagcccacacctgggaaaggacctaaaggaaacagg
aaatccaatcttgtaaattgctgggcacatgaaatggcctgtgttgtactttgccacatg
actaaccctattatgggcaaagttgctaagaatttgaggttttcaattggctgggaagaa
tttggtgagcgcagtgaaataaatggaagtccagaccagagtgtatatcaaatcagcaaa
caaatcaaagctcatgatggcagtgtgttcacactttgtcagatgagaaatgggatgtta
ttaactggaggagggaaagacagaaaaataattctgtgggatcatgatctgaatcctgaa
agagaaatagaggttcctgatcagtatggcacaatcagagctgtagcagaaggaaaggca
gatcaatttttagtaggcacatcacgaaactttattttacgaggaacatttaatgatggc
ttccaaatagaagtacaggaaccaggacactgtgcagattttcatccaagtggcacagtg
gtggccataggaacgcactcaggcaggtggtttgttctggatgcagaaaccagagatcta
gtttctatccacacagacgggaatgaacagctctctgtgatgcgctactcaataggggac
attccaaatggctgcaaactaatcaggaatcgatcggattgtaaggacattgattggacg
acatatacctgtgtgctaggatttcaagtatttggtgtctggccagaaggatctgatggg
acagatatcaatgcactggtgcgatcccacaatagaaaggtgatagctgttgccgatgac
ttttgtaaagtccatctgtttcagtatccctgctccaaagcaaaggctcccagtcacaag
tacagtgcccacagcagccatgtcaccaatgtcagttttactcacaatgacagtcacctg
atatcaactggtggaaaagacatgagcatcattcagtggaaacttgtggaaaagttatct
ttgcctcagaatgagactgtagcggatactactctaaccaaagcccccgtctcttccact
gaaagtgtcatccaatctaatactcccacaccgcctccttctcagcccttaaatgagaca
gctgaagaggaaagtagaataagcagttctcccacacttctggagaacagcctggaacaa
actgtggagccaagtgaagaccacagcgaggaggagagtgaagagggcagcggagacctt
ggtgagcctctttatgaagagccatgcaacgagataagcaaggagcaggccaaagccacc
cttctggaggaccagcaagacccttcgccctcgtcctaa

>gi568815596r:42251222_42461161|GENSCAN_predicted_peptide_2|451_aa
MDQEELPLEEYLLWAQHLPIPRCSGIQGGERHSLDIEGKDQGRFTDLLWKGDKGNRRESV
SVLVLSLGRGESTTQQCRTSVSPSLKPCWKSPFVQDAHDWSLQQPQKQNDLIEGTEKKVS
ARRKGLREEKEFLNMQSLQPGHPISCLTDHSNQALVPPRKGNMEKKMSLTTTKPFETLPA
RVHLQCSTDQSEEAVRTVGPSGAHWLSSARSATMGPSMGLLFASHVVQSSQQCSPSPPAA
VGAHILQLKEQVLTQSDGRAETRDLSSLLGKMPSETTPISAPTYSLALQAGTSFTAKSHW
MKGPRRRAKASQTLKGNLADRKSKARDKWALLYKDKCKPGTKQLTGPVEDTSPKWDNNIL
SLLELRACCQQLDNNFLPNPMRNRESWSAETELNSCIIKRVTERTGYLLTAKGKGYQLDK
GEIRQTQLQITNNGTNWYQVPPDITRTPYHL

>gi568815596r:42251222_42461161|GENSCAN_predicted_CDS_2|1356_bp
atggaccaagaagagctgcccctggaggagtacctactgtgggcccaacatctcccaata
cccaggtgttcagggatacagggaggagaaagacattcattagacatagaaggaaaggac
cagggtagattcacagacttactttggaaaggagataagggaaacagaagagagtctgtg
tcagtcttggtcctcagtctgggacgaggtgagtccacgacacagcagtgccgcacatct
gtatcaccatcactgaagccctgctggaaaagtccctttgtccaagatgcccacgactgg
agtctccagcagccacagaaacagaatgatctcattgaaggcactgagaagaaagtgagt
gcccgaagaaagggcctcagggaggaaaaggaatttcttaatatgcaaagccttcagcct
ggtcatcccatctcatgcttgactgatcacagtaaccaagcccttgtgcctcctaggaaa
gggaatatggagaagaaaatgagccttactaccacgaagccttttgaaactctccctgca
cgtgtgcacctgcagtgctccactgaccagtcagaggaggcagtgcggaccgtgggacca
agcggtgcccactggctttctagcgcccgctctgctaccatgggtccctccatgggattg
ctttttgcaagtcatgtggttcaatctagccagcagtgctcccccagccctcctgctgcc
gtgggcgcccacatccttcagctcaaagaacaggtcctgactcagagtgatgggagagct
gagacgagggacttgagctctctgcttggcaagatgccctcagaaaccaccccaatttct
gcacccacttattccttggcccttcaggcaggcaccagcttcacagcaaagtcacactgg
atgaaggggccgagaaggagagcgaaagctagtcagaccctgaaagggaatctggctgac
agaaagagcaaagccagggataagtgggcactgctttacaaggacaagtgtaaacctggc
accaaacagctgactggcccagtggaggacacctcacccaaatgggacaataacattctc
tctctcctggaattaagggcatgttgccagcagctggacaacaatttccttccaaatcca
atgagaaacagagaaagctggtctgcagagacagaattaaacagctgcataatcaagaga
gtgacagaaaggacaggctacttattaactgcaaaggggaaagggtatcaacttgacaag
ggagaaatccggcagacacaacttcaaatcaccaataatgggacaaactggtatcaagtg
ccacctgacataacgaggacaccatatcacctataa

>gi568815596r:42251222_42461161|GENSCAN_predicted_peptide_3|293_aa
MNRQFTKDEPYKAMNIEKMLRLPCSSNSLADDHSPETGKAGTLQSWGKAAASRCPKQEDI
TVIGHREHGWGVCQAGQCREAKNSGRKHNKVRPAQNGKHSSRATTHFPSGSGGESSQGGR
EMDGNCWGCEKPGALTGVVIDLSQHRVLALSLGTTAGEAGSFSGAVALAADAGSRTLGVM
YYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVP
ELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK

>gi568815596r:42251222_42461161|GENSCAN_predicted_CDS_3|882_bp
atgaacaggcagttcacaaaagatgagccttacaaggcaatgaacattgaaaagatgctg
aggcttccttgcagcagcaacagccttgctgacgaccacagtccagaaactggcaaggct
ggcaccttgcagagctgggggaaggcagcagcaagcagatgcccaaaacaggaggacatc
acggtgataggccacagagaacatggctggggcgtgtgccaggcaggacaatgcagggaa
gccaaaaacagtgggagaaaacacaataaagtgagacccgcccagaatggtaaacacagc
agcagagctaccacacacttcccttctgggagcggtggggaaagcagccagggaggtcgg
gagatggacggaaactgctggggatgtgagaagcctggggcactaactggagttgttatt
gacttgtcccagcaccgggtccttgcgctgagtctcgggaccacagccggggaggcgggg
tccttctctggggcggtcgcgttggcagcggatgcgggaagccggactctgggcgtcatg
tactacaagtttagtggcttcacgcagaagttggcaggagcatgggcttcggaggcctat
agcccgcagggattaaagcctgtggtttccacagaagcaccacctatcatatttgccaca
ccaactaaactgacctccgattccacagtgtatgattatgctgggaaaaacaaagttcca
gagctacaaaagtttttccagaaagctgatggtgtgcccgtctacctgaaacgaggcctg
cctgaccaaatgctttaccggaccaccatggcgctgactgtgggagggaccatctactgc
ctgatcgccctctacatggcttcgcagcccaaaaacaaatga

>gi568815596r:42251222_42461161|GENSCAN_predicted_peptide_4|285_aa
MAVDPGLLLLQGAPLGGQLQLPKSQLQTRASLCSCRCQEQAGALPSLVQLQTRASLCSCR
CQKQAGALPSLVQLQTRASMQQAGTPSPPTLGQLQPPKPWLWTKASLHSWGPRKPHLTLQ
ARKCLLPLPDFSLLLVPTPISEQSWGEDSQPHREPVPVLAPGAAHPTAAASMSDCVQWPD
PTLTHTPLAIPCLTCPWWCGIQAGSKNQMQPARPTNSRYDLALMNQIHTYIQEQEDGKDV
EPLVLLLWWLASQVELTTPGLNIPVSSHYLCGHEKIVVAAAVTAS

>gi568815596r:42251222_42461161|GENSCAN_predicted_CDS_4|858_bp
atggctgtggacccaggcctcctgctcctccagggagccccgcttggggggcagctgcag
ctgcccaaatcacagctgcagacccgggcctccctgtgctcttgcaggtgccaagagcaa
gcaggagccctgccctccctggtgcagcttcagacccgggcctccctgtgctcttgcagg
tgccaaaagcaagcaggagccctgccctccctggtgcagcttcagacccgggcctccatg
cagcaggcaggaaccccatccccgccaactctggggcagctgcagccacccaaaccgtgg
ctgtggaccaaggcatccctacactcttgggggcccagaaagccccacctgaccttgcag
gctcggaaatgcctgctcccactgcctgacttctccctgctgttggtgcccacgccgatc
tcagaacaaagctggggtgaagacagccagcctcacagagagccagtgcctgtgctggca
cctggagctgcccaccccactgcagcagccagcatgtctgactgtgtgcagtggccagac
cccacactcactcacacaccccttgccattccatgtctgacttgcccttggtggtgtggg
atccaggctggcagcaagaaccaaatgcagcctgccaggccaacaaattctagatatgat
ttagctttgatgaatcaaatacatacatacatacaagagcaggaagatggaaaagacgtg
gagccccttgtcctcctgctgtggtggctggcaagccaggttgaactgactacccctgga
ctcaatattccagtgtctagtcactacctttgtggacatgagaagattgtggtggcagca
gcagtgacagcttcctga

>gi568815596r:42251222_42461161|GENSCAN_predicted_peptide_5|322_aa
MMMEYKVFVVFGKILAAILLQCGSPRPRFCWDLFRIVVTWIIEAICIGWFTAECIVRFIV
SKNKCEFVKRPLNIIDLLAITPYYISVLMTVFTGENSQLQRAGVTLRVLRMMRIFWVIKL
ARHFIGLQTLGLTLKRCYREMVMLLVFICVAMAIFSALSQLLEHGLDLETSNKDFTSIPA
ACWWVIISMTTVGYGDMYPITVPGRILGGVCVVSGIVLLALPITFIYHSFVQCYHELKFR
SASGPPVEQLPPDPLTRWCFHPAGSTLCGPANSMAVASPGSRPAAPGGGFLRTEALVLIV
AAGPVDGLNCENHPFRGGCKDF

>gi568815596r:42251222_42461161|GENSCAN_predicted_CDS_5|969_bp
atgatgatggaatacaaagtatttgtggtctttgggaaaatcctagcggccattttgctc
caatgtgggagtcctcggcctcgtttctgctgggacctttttaggatagttgtgacctgg
ataattgaagctatctgcataggttggttcactgccgagtgcatcgtgaggttcattgtc
tccaaaaacaagtgtgagtttgtcaagagacccctgaacatcattgatttactggcaatc
acgccgtattacatctctgtgttgatgacagtgtttacaggcgagaactctcaactccag
agggctggagtcaccttgagggtacttagaatgatgaggattttttgggtgattaagctt
gcccgtcacttcattggtcttcagacactcggtttgactctcaaacgttgctaccgagag
atggttatgttacttgtcttcatttgtgttgccatggcaatctttagtgcactttctcag
cttcttgaacatgggctggacctggaaacatccaacaaggactttaccagcattcctgct
gcctgctggtgggtgattatctctatgactacagttggctatggagatatgtatcctatc
acagtgcctggaagaattcttggaggagtttgtgttgtcagtggaattgttctattggca
ttacctatcacttttatctaccatagctttgtgcagtgttatcatgagctcaagtttaga
tctgctagtggcccaccggtggagcagctgcccccagaccccttgacccggtggtgcttc
caccctgccggaagcaccttgtgtggccccgccaacagcatggcggttgcatccccagga
agcaggcccgcagcgccaggagggggtttcctgaggacagaggcccttgtcctgattgtc
gcagcaggccctgtcgatggacttaactgtgaaaatcaccctttcaggggtggatgcaag
gacttctga