GENSCAN 1.0	Date run:  7-Nov-116	Time: 22:29:29

Sequence gi568815579f:29508657_29715377 : 206721 bp : 50.61% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  17265  18009  745  2  1   85  101   296 0.278  23.50
 1.02 Intr +  18555  18739  185  1  2  108   86   286 0.987  29.91
 1.03 Intr +  19777  19806   30  0  0  139   94    20 0.972   6.03
 1.04 Intr +  21163  21634  472  0  1  106   90   886 0.919  83.25
 1.05 Term +  29521  29696  176  2  2   46   41    82 0.041  -2.78
 1.06 PlyA +  31065  31070    6                               1.05

 2.06 PlyA -  31422  31417    6                               1.05
 2.05 Term -  34297  34284   14  2  2  127   50     7 0.125  -0.84
 2.04 Intr -  36475  36362  114  2  0  106   14    73 0.159   2.12
 2.03 Intr -  37192  37073  120  2  0   66   64    50 0.056   0.87
 2.02 Intr -  53546  53426  121  2  1   79   68    66 0.060   3.77
 2.01 Init -  55346  55320   27  2  0   90   45    44 0.145  -0.03
 2.00 Prom -  57180  57141   40                               0.74

 3.04 PlyA -  59678  59673    6                               1.05
 3.03 Term -  67356  67235  122  1  2   29   47   126 0.352   1.24
 3.02 Intr -  73256  73170   87  0  0   24   86    79 0.319   1.24
 3.01 Init -  74104  73963  142  1  1   49   89    67 0.500   3.20
 3.00 Prom -  76804  76765   40                              -5.06

 4.00 Prom +  81209  81248   40                              -4.06
 4.01 Init +  89380  89472   93  0  0   41   94    98 0.672   6.08
 4.02 Intr +  97540  97669  130  0  1   76   63    86 0.055   5.17
 4.03 Intr + 100001 100053   53  0  2  107   82    44 0.995   4.33
 4.04 Intr + 101753 101976  224  1  2   76   76   436 0.998  38.13
 4.05 Intr + 103206 103283   78  0  0   83  113    11 0.761   1.77
 4.06 Intr + 103461 103522   62  0  2   91   91    24 0.769   1.38
 4.07 Intr + 105215 105316  102  0  0  107   95    46 0.925   7.35
 4.08 Intr + 106588 106674   87  2  0  107    5    82 0.251   1.74
 4.09 Intr + 108068 108211  144  0  0   53   30   106 0.008   1.55
 4.10 Intr + 108748 108793   46  2  1  111   80    20 0.011   0.97
 4.11 Intr + 113184 113289  106  0  1   39   61    67 0.274  -0.68
 4.12 Intr + 115591 115742  152  0  2   84   75   182 0.801  15.46
 4.13 Intr + 133027 133225  199  1  1   13   -2   241 0.096   6.95
 4.14 Intr + 149175 149277  103  2  1   73   64    42 0.016   0.05
 4.15 Intr + 162955 163003   49  2  1   76   74    45 0.059  -0.36
 4.16 Intr + 165168 165996  829  0  1  112  -11  1733 0.151 157.21
 4.17 Intr + 166020 166211  192  2  0   71   95    41 0.311   2.79
 4.18 Intr + 168544 168728  185  0  2  136   40    43 0.163   2.89
 4.19 Term + 173554 173779  226  1  1   56   55   133 0.295   3.05
 4.20 PlyA + 176482 176487    6                               1.05

 5.00 Prom + 178976 179015   40                              -7.46
 5.01 Init + 181255 181341   87  0  0   70  100   108 0.616  10.84
 5.02 Term + 188403 189086  684  2  0  -15   47   300 0.509   9.24
 5.03 PlyA + 189878 189883    6                               1.05

 6.03 PlyA - 190951 190946    6                               1.05
 6.02 Term - 194321 194056  266  0  2  102   47   505 0.996  43.47
 6.01 Init - 199757 199598  160  2  1  102  111   199 0.809  23.59

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  96902  96977   76  1  1   86   58    11 0.838  -2.84
S.002 Term - 122307 122185  123  0  0   48   47   136 0.862   3.88


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579f:29508657_29715377|GENSCAN_predicted_peptide_1|535_aa
MQRWRRLGAQPLTAPSLPLPSPSPRLSPAPGPPRRTRSPRAALGRTPGLRAAAERPLALR
KEPRRNRRGRLREPKEVAIGSRTRRRQGGRSSRLRGTHSLGQGWVPARPSPCPARRAETE
PRIPTVLWTTGQREALTDRQQPPGGTASPAHPAQRPPPEPHRASRRGSGADWRPPAARGG
GAARGHGRLGGVLARAGADPSPRGRRLSAPGPPPPPRPPREMEQRNRLGALGYLPPLLLH
ALLLFVADAAFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHEL
ALSVPGARSKVTNKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQE
HKAQAMLRVLSRFAPPNMQAAEAVSHIQSSGPRRHGPASAANANNAGAASRTTSEPGRGD
KSPPPGSPPAAIDPAVPEAAAASAAHTPTTTVAAAAAASSASPPSGQAVLLRQRHGSVLC
LFSGYIQPFDWNLESITSHSLCTSSVICYHQHDTDSYAREWLAGSGGIIRGKMLA

>gi568815579f:29508657_29715377|GENSCAN_predicted_CDS_1|1608_bp
atgcagcggtggaggcggcttggcgcccagccactgaccgccccctcccttcccctcccc
tccccctctccccgcctctctccggctccgggtccgccacgccggacccgctctccccgc
gctgcgctgggtcggacgccaggtctgcgcgccgcggctgagcgcccactcgccctgcgg
aaagagccgcggaggaaccggcgggggcggctgcgggagccgaaggaggtggcaatcggg
agcagaaccagaaggagacagggaggcagaagctcgcggctccgtggcacgcactccctc
ggccagggatgggtcccggcgcggcccagcccctgcccggcccgccgggcagagactgaa
ccgcggatccccaccgtcctgtggacgaccggacagagagaggcactgaccgatcgccag
cagcctcccggtgggaccgcgtctcctgcacaccccgcgcagcgccccccgccggagccg
caccgggcaagccggcgagggagcggggctgattggcggccgccggcggccaggggaggg
ggcgccgcgcggggccatggcaggctcggaggcgtcctagcccgagccggagccgatccg
agcccacgcggccgccgcctctccgctcccgggcccccgccgccaccgcgccccccgcgg
gagatggaacagcggaaccggctcggtgccctcggatacctgccgcctctgctgctgcat
gccctgctgctcttcgtggccgacgctgcattcacagaagtccccaaagatgtgacagta
cgggagggagacgacatcgaaatgccctgcgcgttccgggccagcggagccacctcgtat
tcgctggagattcagtggtggtacctcaaggagccaccccgggagctgctgcacgagctg
gcgctcagcgtgccgggcgcccggagcaaggtaacaaataaggatgcaactaaaatcagc
accgtacgcgtccagggcaatgacatctcacaccggcttcggctgtctgccgtgcggctg
caggacgagggcgtgtacgagtgccgcgtgtcggactacagcgacgacgacacgcaggag
cacaaggcccaggcgatgctgcgcgtgctctcgcgcttcgcgccgcccaacatgcaggcc
gccgaggccgtgtcccacatccagagcagcggcccgcgtcgccacggcccagccagcgcc
gccaacgccaacaacgcgggcgccgcgagccgtaccacctccgagcccggccgcggcgac
aagagcccgccgcccgggagccctcccgccgccatcgatcccgcagtccccgaggccgcg
gcagcctcggcggcccacacgcccaccaccacagtcgcggcagctgctgctgcctcgtca
gcgtcgccgccatcgggacaggcggtcctgctgcgccagaggcacggctcggtattatgc
ttgttttccggatacatccaaccatttgattggaatcttgagtccatcacttcccactct
ctctgtacgagttccgtcatctgttatcatcagcacgacaccgattcctatgccagagag
tggttggcaggatccggggggataatccgtggaaagatgttagcttaa

>gi568815579f:29508657_29715377|GENSCAN_predicted_peptide_2|131_aa
MVLTEGPGQKEEVVQIIWPESPGFHLTTVGNTGCVQTSECKVGGAIRGAESGGTCAGWFY
QKDTCTCMFIIALMTHNSKHMEPTQMPINDHGSPSDIGPSLTQSGGSLCPTGSKASSISS
GLYVDGRSSVA

>gi568815579f:29508657_29715377|GENSCAN_predicted_CDS_2|396_bp
atggtcctcaccgagggccccgggcagaaggaggaggttgtacaaatcatctggcctgaa
agtccaggattccacctgaccactgtgggaaacacaggctgtgttcaaacatccgaatgc
aaagtgggtggtgctatccgaggggcagaatcagggggtacatgtgcaggttggttctac
caaaaagacacctgcacctgtatgttcatcatagcactcatgactcacaacagcaaacac
atggaaccaacccagatgcccatcaacgaccatgggtctccttcagacattgggccctcg
ctgacccagtctggaggctccctttgtcctacaggctccaaggcaagttccatttcttcg
gggctgtatgtggatggccgtagttcagtggcctag

>gi568815579f:29508657_29715377|GENSCAN_predicted_peptide_3|116_aa
MANLLYLIIVTHKNGNARWFNQILLLIHEKPNIWDQQGSRKTFTIERGLDTADNDIPVIA
LEELHDSPVTVGPPWQAAGEEGLTFAQTTVALVVGEIQLSVSNKTLRASGRDEEAS

>gi568815579f:29508657_29715377|GENSCAN_predicted_CDS_3|351_bp
atggcaaatttgctgtatttgatcattgtgacccataaaaatggcaatgccagatggttc
aatcaaatacttttactaattcatgagaaacctaacatctgggaccaacagggtagcaga
aagaccttcaccatagaacgtgggcttgacacagcagacaatgatattcctgtgatagcc
ctagaggagttacatgattctccagtgactgttgggcctccatggcaagccgctggcgag
gaaggattgacttttgcccaaacgacagtggctctggttgtaggggagatccagctgtct
gtgtctaataagactctccgagcatcagggagagacgaggaggcctcttaa

>gi568815579f:29508657_29715377|GENSCAN_predicted_peptide_4|1019_aa
MFYHLVPDGKKPGATLKATSAPKGKANGGRQAHAPPRWASAGDVTHSAISELRESATAAA
SASSESAGSGPRMKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQARE
DQLQRKAVVLEYFTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQ
YIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKII
TKEDRLKVIPKLNCVFTVETDGFISYIYGSKFQLRSRCSEAAQVLSPKQHAVTAASDEHT
HGLGTWSPSTLPPRTRAPAQRLPCGYTVALMAHPGVISPSPQCNHICLFHIIFFHWNVSC
SDAGTLPMVFAAITIPSALKGGSPTRRVEMAPAVQAAEQGAVDKASVAKEAGAAAEVFSG
EKGAGRARRCQKRKKEKQKRRRRRRKEEGGEGGGKKKKRKKRKRRKQKKWKKKMEEEKEE
EKEKEGKERRVLQGVGRCWLEASVSPMGFSGGLHGPLHDSAASFPWSLQYTAKISKLKIA
VLTRQLETMVDHLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTKECRKKAKP
RIFFLFNDILVYGSIVLNKRKYRSQHIIPLEEVTLELLPETLQAKNRWMIKTAKKSFVVS
AASATERQEWISHIEECVRRQLRATGRPPSTEHAAPWIPDKATDICMRCTQTRFSALTRR
HHCRKCGFVVCAECSRQRFLLPRLSPKPVRVCSLCYRELAAQQRQEEAEEQGAGSPGQPA
HLARPICGASSGDDDDSDEDKEGSRDGDWPSSVEFYASGLTPGLQNICPQASSTAQAPKR
AAPEAAQGSGTPSHGGRCSGGEWLFLDSQCLFAGHCVLMASLQGWNRTAAAPSPKVLGPV
RAHGLGWPRTFAEPSHLRSCSRTSWAMPAAGDTAGSETNKARTACCPRQHLGYGDLGSGI
LEQHTGTLRTVCKLLIPLKYQNAFGFQQPPDLLGAPTMKQRPLNLACPSHNHLLAQPNP

>gi568815579f:29508657_29715377|GENSCAN_predicted_CDS_4|3060_bp
atgttttaccatttggttcccgatgggaagaagccaggggcaaccctcaaagccaccagt
gctccaaaaggaaaggccaacgggggccgccaggcgcatgcgcccccgaggtgggcgagc
gccggtgatgtcacgcatagcgccatctccgagctccgagagtctgcgacagcagctgcc
agtgcgtcatcagagagcgccggaagcggtccgagaatgaagagtgtgatctaccatgca
ttgtctcagaaagaggcgaatgactccgatgtccagccttcaggagcacagcgggccgag
gccttcgtgagggccttcctgaagcgcagcacgccccgcatgagcccgcaggcccgcgag
gaccagctgcagcgcaaggcggtggtcctggagtacttcacccgccacaagcgcaaggag
aagaagaagaaagccaaaggcctctctgccaggcaaaggagggagctgcggctctttgac
attaaaccagagcagcagagatacagccttttcctccctctccatgaactctggaaacag
tacatcagggacctgtgcagtgggctcaagccagacacgcagccacagatgattcaggcc
aagctcttaaaggcagatcttcacggggctattatttcagtgacaaaatccaaatgcccc
tcttatgtgggtattacaggaatccttctacaggaaacaaagcacattttcaaaattatc
accaaagaagaccgcctgaaagttatccccaagctaaactgcgtgttcactgtggaaacc
gatggctttatttcctacatttacgggagcaaattccagcttcggtcaaggtgttctgag
gcagctcaagtgctctcccccaagcagcacgcagtcaccgctgccagtgatgaacacacg
cacgggctaggcacatggagcccaagcacactgccacctcggacacgggccccggcccag
cgactgccttgtggatacactgttgccctcatggcccacccaggggtcatatctcccagt
ccccagtgcaaccatatctgcctgtttcatatcattttcttccactggaatgtgagctgc
tcggacgctgggacactgcccatggtgttcgccgccataaccattcccagtgccctgaag
ggtggcagccccactaggcgagtggagatggctccagccgtccaagctgctgaacaaggg
gctgtggacaaggccagcgtggccaaggaggcaggggctgcagctgaggtcttctcaggg
gaaaagggagcaggcagagcaagacgctgtcagaaaaggaagaaagagaagcagaagagg
aggaggaggaggagaaaagaagaaggaggtgaaggaggaggaaagaagaaaaagaggaag
aagaggaagaggaggaagcagaagaagtggaagaagaagatggaggaggagaaagaggag
gagaaggagaaggaggggaaagaaaggagagttttgcaaggggttggtcgctgttggctg
gaggcctcagtgtctcccatgggcttctccggagggctgcatggacctcttcatgactca
gcagccagcttcccctggagtttgcagtatacagccaagatcagcaagctaaaaatagca
gttcttacccgccagctggagacgatggtggaccacttggccaacacggagatcaacagc
cagcgcatcgcggcagtggagagctgcttcggggcctcggggcagccgctggcgctgcca
ggccgagtgctgctgggcgagggcgtgctgaccaaagagtgccgcaagaaggccaagccg
cgcatcttcttcctctttaacgacatcctggtgtatggcagcatcgtgctcaacaagcgc
aagtaccgcagccagcacatcatccccctggaggaggtcacactggagctgttgccggag
acgctgcaggccaagaaccgctggatgatcaagacggccaagaagtcctttgtggtgtcg
gccgcctccgctacggagcgccaggaatggattagccacatcgaggagtgcgtgcggcgg
caactgagggccacgggccgcccgcccagcacggagcacgcggcaccctggatccccgac
aaggccacggacatctgcatgcgctgcacgcagacgcgcttctctgccctcacgaggcgc
caccactgccgcaagtgcggcttcgtggtctgcgctgagtgctcgcgccagcgcttcctg
ctcccgcgcctgtcccccaagcccgtgcgcgtctgcagcctctgctaccgcgaactggcc
gcccagcagcggcaggaggaggcggaggagcagggcgcggggtccccagggcagccagcc
cacctggcccggcccatctgcggagcgtccagtggagatgacgatgactccgacgaggac
aaggagggcagcagggacggcgactggcccagcagcgtggagttctacgcctcggggctg
acccccggcctgcagaacatctgtccccaagccagctccactgcccaggcccccaagagg
gcagctccagaagctgcccagggctccgggaccccatcccatggtggcaggtgcagcggt
ggggagtggctctttctggactcccagtgcctttttgctggacactgtgtccttatggct
tcactgcagggctggaacagaactgctgctgccccaagtcccaaggtgttagggcctgta
agggcccacggcttggggtggcccaggaccttcgcagagccttcacacctgcggtcttgc
tcccgcaccagctgggccatgccagctgctggggacaccgctgggagtgagacaaacaag
gcccgcacagcatgctgcccacggcagcacctgggctatggggacctgggctccgggatt
ctggagcagcacactgggacacttcgtacagtttgcaaattactaatacccttaaaatac
caaaatgcctttggatttcagcagccaccagacctcctgggggcccccaccatgaagcag
aggcctttgaacctcgcctgccccagccataaccacttgctggcacaacccaatccctga

>gi568815579f:29508657_29715377|GENSCAN_predicted_peptide_5|256_aa
MLLAIIPYFPGIIASNMAAPSELSDEELKAPDTRHPDTWTPNTQTPRHSDTQTPRNLTPR
HPDTQTPRNLTPRHPDTQTPDTQTPRNLTARHPDTQTPDTQTPGHSDTQTLRHPDIQTPD
TQKPDTPPPGHPDILPPEHPATQSLGHLDTQPPHHPDTLPLQYPDTPTPRHPDTPLPGHL
DNPPPGHLDTQTPRPSATQTPCHSDTQTPHHLDTWTPGHPDTRTLRHLTTQTPRNLTPRN
LDTRTPRHLTPRHTDT

>gi568815579f:29508657_29715377|GENSCAN_predicted_CDS_5|771_bp
atgttgctggcaattatcccgtattttcctgggataattgccagcaacatggcagccccc
tctgagcttagtgatgaagaattgaaggcacctgacaccagacacccagacacctggaca
cccaacactcagacacccagacactcagatacccagacacccagaaacctgacacccaga
cacccggatacccagacacccagaaacctgacacccagacacccagatacccagacaccc
gacacccagacacccagaaacctgacagccagacacccggatacccagacacccgacacc
cagacacccggacactcagacacccagacactcagacacccagacatccagacacctgat
acccagaaacctgacaccccaccacccggacacccagacatcctgccacctgaacaccct
gccactcagtcacttggacacctggatactcagccaccccaccatccagataccctgcca
ctccaatacccagacaccccaacccccagacacccagacactccactacctggacacctg
gacaacccaccacctggacacctggacacccaaacacccagaccctctgccacccagaca
ccctgccactcagacacccagacaccccaccacctggacacctggacacccggacaccca
gacacccggacactcagacacctcaccacccagacaccgagaaacctgacacccagaaac
ctggacacccggacacccagacacctgacaccaagacacacagacacttga

>gi568815579f:29508657_29715377|GENSCAN_predicted_peptide_6|141_aa
MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL
LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTALVMGSEALQQQ
LLAMLVNYVTKELRAEIQYDD

>gi568815579f:29508657_29715377|GENSCAN_predicted_CDS_6|426_bp
atgactatcatggtggaggacatcatgaagctgctgtgctccctttctggggagaggaag
atgaaggcggctgtcaagcactctgggaagggtgccctggtcacaggggccatggccttc
gtcgggggtttggtgggcggcccaccgggactcgccgttgggggggctgtcggggggctg
ttaggtgcctggatgacaagtggacagtttaagccggttcctcagatcctaatggagctg
ccccctgccgagcaacagaggctctttaacgaagccgcagccatcatcaggcacctggag
tggacggacgccgtgcagctgaccgcgctggtcatgggcagcgaggccctgcagcagcag
ctgctggccatgctggtgaactacgtcaccaaggagctgcgggccgagatccagtatgat
gactag