Result of FASTA (ccds) for pF1KB3649
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3649, 592 aa
  1>>>pF1KB3649 592 - 592 aa - 592 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0445+/-0.000948; mu= 8.3135+/- 0.057
 mean_var=200.8339+/-40.273, 0's: 0 Z-trim(112.9): 11  B-trim: 548 in 1/51
 Lambda= 0.090501
 statistics sampled from 13613 (13620) to 13613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.418), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS4447.1 CANX gene_id:821|Hs108|chr5             ( 592) 4150 554.6 1.3e-157
CCDS3751.1 CLGN gene_id:1047|Hs108|chr4            ( 610) 2442 331.6 1.8e-90
CCDS12288.1 CALR gene_id:811|Hs108|chr19           ( 417)  472 74.2 3.7e-13


>>CCDS4447.1 CANX gene_id:821|Hs108|chr5                  (592 aa)
 initn: 4150 init1: 4150 opt: 4150  Z-score: 2943.1  bits: 554.6 E(32554): 1.3e-157
Smith-Waterman score: 4150; 100.0% identity (100.0% similar) in 592 aa overlap (1-592:1-592)

               10        20        30        40        50        60
pF1KB3 MEGKWLLCMLLVLGTAIVEAHDGHDDDVIDIEDDLDDVIEEVEDSKPDTTAPPSSPKVTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEGKWLLCMLLVLGTAIVEAHDGHDDDVIDIEDDLDDVIEEVEDSKPDTTAPPSSPKVTY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 KAPVPTGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVEEMKESKLPGDKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KAPVPTGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVEEMKESKLPGDKGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 DKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 ILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEAVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEAVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 PDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPRC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 ESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPFRMTPFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPFRMTPFS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 AIGLELWSMTSDIFFDNFIICADRRIVDDWANDGWGLKKAADGAAEPGVVGQMIEAAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AIGLELWSMTSDIFFDNFIICADRRIVDDWANDGWGLKKAADGAAEPGVVGQMIEAAEER
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 PWLWVVYILTVALPVFLVILFCCSGKKQTSGMEYKKTDAPQPDVKEEEEEKEEEKDKGDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PWLWVVYILTVALPVFLVILFCCSGKKQTSGMEYKKTDAPQPDVKEEEEEKEEEKDKGDE
              490       500       510       520       530       540

              550       560       570       580       590  
pF1KB3 EEEGEEKLEEKQKSDAEEDGGTVSQEEEDRKPKAEEDEILNRSPRNRKPRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEEGEEKLEEKQKSDAEEDGGTVSQEEEDRKPKAEEDEILNRSPRNRKPRRE
              550       560       570       580       590  

>>CCDS3751.1 CLGN gene_id:1047|Hs108|chr4                 (610 aa)
 initn: 1793 init1: 1670 opt: 2442  Z-score: 1737.7  bits: 331.6 E(32554): 1.8e-90
Smith-Waterman score: 2446; 58.7% identity (79.6% similar) in 593 aa overlap (5-579:7-585)

                 10        20        30        40        50        
pF1KB3   MEGKWLLCMLLVLGTAIVEAHDGHDDDVIDIEDDLDDVIEEVEDSKPDTTAPPSSPKV
             :: :. :.. .  .:  :   :::    .:...  ::.     :..    : ..
CCDS37 MHFQAFWL-CLGLLFISINAEFMD---DDVET--EDFEENSEEI-----DVNESELSSEI
                10        20             30             40         

       60        70        80        90       100       110        
pF1KB3 TYKAPVPTGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVEEMKESKLPGDK
        ::.: : ::::::..:: : :.::.:::::::: :.::. :::.::.::.::...:::.
CCDS37 KYKTPQPIGEVYFAETFDSGRLAGWVLSKAKKDDMDEEISIYDGRWEIEELKENQVPGDR
      50        60        70        80        90       100         

      120       130       140       150       160       170        
pF1KB3 GLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQ
       :::: :::::::::: : :::.:  ::::::::::::.::.:::::.:::. : .: :..
CCDS37 GLVLKSRAKHHAISAVLAKPFIFADKPLIVQYEVNFQDGIDCGGAYIKLLADTDDLILEN
     110       120       130       140       150       160         

      180       190       200       210       220       230        
pF1KB3 FHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLY
       :.::: : :::::::::::::::::::::.::::..:::::: ::.::: .:::.:::::
CCDS37 FYDKTSYIIMFGPDKCGEDYKLHFIFRHKHPKTGVFEEKHAKPPDVDLKKFFTDRKTHLY
     170       180       190       200       210       220         

      240       250       260       270       280       290        
pF1KB3 TLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEA
       ::..:::..::.::::.:::.:.::.:..::..: .:::::.:.:::.:::: ::::: :
CCDS37 TLVMNPDDTFEVLVDQTVVNKGSLLEDVVPPIKPPKEIEDPNDKKPEEWDERAKIPDPSA
     230       240       250       260       270       280         

      300       310       320       330       340       350        
pF1KB3 VKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANP
       :::.::::. ::.: :  ..:: :::::::...:::.::::.::.:: ::::::::: ::
CCDS37 VKPEDWDESEPAQIEDSSVVKPAGWLDDEPKFIPDPNAEKPDDWNEDTDGEWEAPQILNP
     290       300       310       320       330       340         

      360       370       380       390       400       410        
pF1KB3 RCESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPFRMTP
        :.   ::: :. :.::::.::: :.::..:::.:::::.::::::::.::: .:: .: 
CCDS37 ACR--IGCGEWKPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFEDDHPFLLTS
     350         360       370       380       390       400       

      420       430       440       450       460       470        
pF1KB3 FSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGWGLKKAADGAAEPGVVGQMIEAAE
       :::.:::::::::::.:::::::......: :: :::  :    .: .:::. :.. :::
CCDS37 FSALGLELWSMTSDIYFDNFIICSEKEVADHWAADGWRWKIMIANANKPGVLKQLMAAAE
       410       420       430       440       450       460       

      480       490       500         510       520            530 
pF1KB3 ERPWLWVVYILTVALPVFLVILFC--CSGKKQTSGMEYKKTDAPQPDVK-----EEEEEK
        .::::..:..:...:. :.  ::   . ::. .  ::::::   :..:     ::.:::
CCDS37 GHPWLWLIYLVTAGVPIALITSFCWPRKVKKKHKDTEYKKTDICIPQTKGVLEQEEKEEK
       470       480       490       500       510       520       

                      540        550       560       570        580
pF1KB3 ---------EEEKDKGDEEE-EGEEKLEEKQKSDAEEDGGTVSQEEEDRKPKA-EEDEIL
                :::: ..: :  : ::. : ..::. ::     .::: ... :.  :::. 
CCDS37 AALEKPMDLEEEKKQNDGEMLEKEEESEPEEKSE-EEIEIIEGQEESNQSNKSGSEDEMK
       530       540       550       560        570       580      

              590              
pF1KB3 NRSPRNRKPRRE            
                               
CCDS37 EADESTGSGDGPIKSVRKRRVRKD
        590       600       610

>>CCDS12288.1 CALR gene_id:811|Hs108|chr19                (417 aa)
 initn: 494 init1: 326 opt: 472  Z-score: 349.7  bits: 74.2 E(32554): 3.7e-13
Smith-Waterman score: 917; 36.5% identity (57.8% similar) in 490 aa overlap (69-555:21-408)

       40        50        60        70          80        90      
pF1KB3 IEEVEDSKPDTTAPPSSPKVTYKAPVPTGEVYFADSF--DRGTLSGWILSKAKKDDTDDE
                                     ::: ..:    :  : :: :: :.:    .
CCDS12           MLLSVPLLLGLLGLAVAEPAVYFKEQFLDGDGWTSRWIESKHKSDF--GK
                         10        20        30        40          

        100       110       120       130       140       150      
pF1KB3 IAKYDGKWEVEEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQN
       ..  .::.  .: :      ::::   . :. .:.::.. .::    . :.::. :. ..
CCDS12 FVLSSGKFYGDEEK------DKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQ
       50        60              70        80         90       100 

        160       170       180       190        200       210     
pF1KB3 GIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGIYE
       .:.:::.::::. ..  :.  ..:  . :.:::::: ::   : .: :: .:. .. : .
CCDS12 NIDCGGGYVKLFPNS--LDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINK
             110         120       130       140       150         

         220       230       240       250       260       270     
pF1KB3 EKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSRE
       . . :           :. :::::::. :::..:. .:.: :.::.: .:      : ..
CCDS12 DIRCK----------DDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWD--FLPPKK
     160                 170       180       190       200         

         280       290       300       310       320       330     
pF1KB3 IEDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPD
       :.::.  :::::::: :: ::   ::.:::.                     ::..::::
CCDS12 IKDPDASKPEDWDERAKIDDPTDSKPEDWDK---------------------PEHIPDPD
       210       220       230                            240      

         340       350       360       370       380       390     
pF1KB3 AEKPEDWDEDMDGEWEAPQIANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQG
       :.:::::::.::::::      :             :::.::.:::.::: .::::.:.:
CCDS12 AKKPEDWDEEMDGEWE------P-------------PVIQNPEYKGEWKPRQIDNPDYKG
        250       260                          270       280       

         400       410       420       430       440       450     
pF1KB3 IWKPRKIPNPDFFEDLEPFRMTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGW
        :   .: ::..  :   . .  :...::.::.. :  .::::.:  :.  .....:. :
CCDS12 TWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW
       290       300       310       320       330       340       

         460       470       480       490       500       510     
pF1KB3 GLKKAADGAAEPGVVGQMIEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQTSGMEYK
       :. :::.         :: .  .:.  :                      :..    . :
CCDS12 GVTKAAEK--------QMKDKQDEEQRL----------------------KEEEEDKKRK
       350               360                             370       

         520       530       540       550       560       570     
pF1KB3 KTDAPQPDVKEEEEEKEEEKDKGDEEEEGEEKLEEKQKSDAEEDGGTVSQEEEDRKPKAE
       .        .:: :.::...:: ::.:: ::  :: .. :                    
CCDS12 E--------EEEAEDKEDDEDK-DEDEEDEEDKEEDEEEDVPGQAKDEL           
               380       390        400       410                  

         580       590  
pF1KB3 EDEILNRSPRNRKPRRE




592 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:28:28 2016 done: Sat Nov  5 13:28:29 2016
 Total Scan time:  2.690 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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