GENSCAN 1.0	Date run:  6-Nov-116	Time: 23:29:31

Sequence gi568815589r:72801211_73053000 : 251790 bp : 37.27% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   2108   2416  309  1  0   71   48   175 0.979   7.45
 1.02 PlyA +   2689   2694    6                               1.05

 2.08 PlyA -   3316   3311    6                               1.05
 2.07 Term -   7900   7702  199  0  1   19   42   208 0.227   5.19
 2.06 Intr -  15732  15606  127  1  1   58   42   122 0.351   3.42
 2.05 Intr -  26938  26860   79  1  1  108   30    76 0.114   2.01
 2.04 Intr -  27639  27543   97  2  1   54   89    56 0.062   1.39
 2.03 Intr -  35637  35534  104  0  2   99   37    87 0.051   2.75
 2.02 Intr -  35917  35808  110  2  2    8   48   154 0.489   2.48
 2.01 Init -  36670  36538  133  1  1   43   89    62 0.884   2.15
 2.00 Prom -  41859  41820   40                              -4.85

 3.00 Prom +  44875  44914   40                              -5.25
 3.01 Init +  49409  49529  121  1  1   68   74    90 0.927   6.00
 3.02 Term +  69498  69619  122  1  2   20   53   182 0.030   5.56
 3.03 PlyA +  69779  69784    6                               1.05

 4.00 Prom +  70088  70127   40                              -5.75
 4.01 Sngl +  79030  79224  195  0  0   65   42   202 0.930   8.21
 4.02 PlyA +  79422  79427    6                               1.05

 5.15 PlyA -  80333  80328    6                               1.05
 5.14 Term -  88768  88649  120  1  0   66   48    99 0.369   1.19
 5.13 Intr -  91088  90981  108  2  0   92   84    48 0.044   4.36
 5.12 Intr - 104822 104804   19  1  1  112  103   -14 0.107  -1.80
 5.11 Intr - 108549 108392  158  0  2   59  103    93 0.924   5.79
 5.10 Intr - 110912 110748  165  2  0   34   84   206 0.999  14.04
 5.09 Intr - 115894 115710  185  2  2   88  111    98 0.997  10.69
 5.08 Intr - 117612 117510  103  0  1  109   74   139 0.997  13.43
 5.07 Intr - 122922 122809  114  0  0  100   75   124 0.847  12.02
 5.06 Intr - 124402 124274  129  1  0   43  107    55 0.708   2.87
 5.05 Intr - 125967 125906   62  1  2  108   69   -21 0.646  -4.47
 5.04 Intr - 127811 127682  130  2  1   39  111   110 0.900   7.75
 5.03 Intr - 129809 129669  141  2  0   60  101   133 0.993  11.43
 5.02 Intr - 139042 138938  105  1  0   86  113    95 0.993  11.29
 5.01 Init - 147428 147381   48  2  0   47  121    37 0.636   3.90
 5.00 Prom - 148634 148595   40                              -3.85

 6.03 PlyA - 150957 150952    6                               1.05
 6.02 Term - 157758 157337  422  1  2   62   53   203 0.832   8.67
 6.01 Init - 158420 158285  136  2  1   59   25   120 0.621   3.15
 6.00 Prom - 160537 160498   40                              -8.55

 7.00 Prom + 160832 160871   40                              -4.55
 7.01 Init + 179804 179942  139  1  1   49   54   140 0.961   7.05
 7.02 Intr + 180360 180441   82  1  1  123   45    66 0.766   3.58
 7.03 Intr + 181873 182128  256  1  1   54   75    96 0.662   1.42
 7.04 Term + 186721 186897  177  0  0   54   43   117 0.525   0.50
 7.05 PlyA + 187343 187348    6                               1.05

 8.00 Prom + 209475 209514   40                              -5.35
 8.01 Init + 210449 210694  246  1  0   31   27   204 0.539   6.24
 8.02 Intr + 217661 217750   90  1  0   70  100    20 0.300   0.67
 8.03 Intr + 234692 234767   76  1  1  -21  110   102 0.429  -0.33
 8.04 Intr + 237434 237588  155  0  2   81   31   136 0.619   6.07
 8.05 Intr + 237616 237795  180  0  0  114   99    -6 0.486   2.24
 8.06 Intr + 238123 238252  130  0  1   21   59   126 0.462   2.35
 8.07 Intr + 241572 241705  134  1  2   72   18    75 0.193  -1.66
 8.08 Intr + 242162 242248   87  1  0   29  116    76 0.573   3.75
 8.09 Intr + 244133 244256  124  1  1   52   84   143 0.517   9.54

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  35637  35530  108  0  0   99   54    87 0.842   3.93
S.002 Init +  38577  38697  121  2  1   68   74    95 0.840   6.50
S.003 Term +  49625  49719   95  0  2   85   49    80 0.839   0.81


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:72801211_73053000|GENSCAN_predicted_peptide_1|102_aa
MGKDFKTKTSKAIATKTKIDKWELIKLKSFCTAKETLIRVNRQPTEWEKIFAIYPFDKDL
ISRIYKELKQIYEKKTYNPIKKWVKDMNRHFSKKRFTWPTTI

>gi568815589r:72801211_73053000|GENSCAN_predicted_CDS_1|309_bp
atgggcaaagatttcaagacgaaaacatcaaaagcaattgcaacaaaaacaaaaattgac
aaatgggaactaattaaactaaagagcttctgtacagcaaaagaaactctcatcagagtg
aacagacaacctacagaatgggagaaaatttttgcaatctatccatttgacaaagatcta
atatccagaatctacaaagaacttaaacaaatttacgagaaaaaaacatacaaccccatt
aaaaagtgggtgaaggacatgaacagacacttctcaaagaagagattcacgtggccaaca
accatatga

>gi568815589r:72801211_73053000|GENSCAN_predicted_peptide_2|282_aa
MEVNLKKTTRGIKFRTGRETVRLFYGCLLVIKKNEKLRDRIIEITPSNCRQATIHTDSPS
AKKIKRGEMQTPEPCQCIETQLNSSLQGGKNCIEFDADLYGFTTDNMIIGRQMSRLKSVL
TLGLYHLGQVAFSPSEIPTDSDPCLVLQVISSPSQKASQYKEVSTGFTVKGSASGWKSEV
TDFQDTWSPDESDVVIQFLNSKTISTVSTHLNLSSLQGAESGKENRNETKPAEYLIAKNG
KATQEHPVSVAITSLSFTEEHYLTAFGQSEEALSMRVMETTL

>gi568815589r:72801211_73053000|GENSCAN_predicted_CDS_2|849_bp
atggaagtcaatctgaaaaagacaaccagaggaataaagtttagaactggcagggaaaca
gtgcgattattctatggctgccttttggtgatcaaaaagaatgagaaactcagagacagg
ataatagaaatcactccttccaactgccggcaggccaccatccacacggacagcccatcc
gccaaaaaaatcaagcggggagagatgcaaactccagaaccatgccagtgtatagaaacc
cagctgaattcttccctccaaggaggcaagaattgtatcgagtttgatgcagacctgtat
ggattcaccactgataacatgatcattggaagacaaatgagcagactgaaaagtgtgctg
accctgggtctataccacctcggacaagtggctttcagcccatctgaaattcccactgat
tctgatccctgtttggtgctgcaagttattagctctccctcacagaaagcctcgcagtat
aaagaagtgagcactggatttactgtgaaaggatctgcttcaggctggaaatctgaagtg
acagatttccaagacacatggtccccagatgaatcggatgtcgtgattcagtttttaaac
tcaaaaacgatttctactgtatcgactcatcttaacctgtcaagtttacaaggagctgaa
tcaggtaaggaaaatagaaatgaaaccaagccagctgaatacctcatagcaaagaatggg
aaagcaacacaagagcatcctgtatctgtagccattacctcactgtcgttcaccgaagag
cattacctaactgcttttggccagtccgaggaggcactttcaatgagggtgatggagacg
accttataa

>gi568815589r:72801211_73053000|GENSCAN_predicted_peptide_3|80_aa
MTLKEHAAFKHLFNKAHLAPPLIHSTLSGYSTCFREHRVGGNYAKWLLGTATVLLAEGVR
GGDGITRVQNHGEENYLGQS

>gi568815589r:72801211_73053000|GENSCAN_predicted_CDS_3|243_bp
atgactcttaaggagcatgctgccttcaagcatctgtttaacaaagcacatcttgcaccg
cccttaatccattcaaccctgagtggatacagcacatgtttcagagagcacagggttggg
ggtaactatgctaaatggctgctgggaacagcgacagtccttctggctgaaggcgtacgt
ggaggtgatggaatcaccagagtccagaatcatggagaagagaactacctgggccagtcc
tga

>gi568815589r:72801211_73053000|GENSCAN_predicted_peptide_4|64_aa
MTVALEEGKDWDDASTSQGTQKLASEPPEARRGPGTNSPSQPSGGSNPDLELPASRTESL
QDCL

>gi568815589r:72801211_73053000|GENSCAN_predicted_CDS_4|195_bp
atgactgtggccttagaagaaggtaaagattgggatgatgcttccacaagccaaggaaca
caaaagcttgccagtgaaccaccagaagctaggaggggtcctggaaccaattctccctca
cagccctctggaggatctaaccctgatcttgaacttccagcctccaggactgagagcctc
caggactgtctctaa

>gi568815589r:72801211_73053000|GENSCAN_predicted_peptide_5|528_aa
MSRRAFDEDFWEGALKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKA
ARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGC
IKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSC
GNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTG
STEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAA
SRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGA
KLECGGGPWGNKGYFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFY
GLSAGVFTKDIDKAITISSALQAGTVWVNCYGVLLTWAKTTPALSSTPGPFLLNERSWNN
PEELHPLLHAASQCPHSSHCAFQVKAYQGSSYGKEQQFSGGEEEAAEK

>gi568815589r:72801211_73053000|GENSCAN_predicted_CDS_5|1587_bp
atgagtagaagagcttttgatgaggatttttgggaaggtgctttaaagatcttcataaac
aatgaatggcatgattcagtgagtggcaagaaatttcctgtctttaatcctgcaactgag
gaggagctctgccaggtagaagaaggagataaggaggatgttgacaaggcagtgaaggcc
gcaagacaggcttttcagattggatccccgtggcgtactatggatgcttccgagaggggg
cgactattatacaagttggctgatttaatcgaaagagatcgtctgctgctggcgacaatg
gagtcaatgaatggtggaaaactctattccaatgcatatctgaatgatttagcaggctgc
atcaaaacattgcgctactgtgcaggttgggctgacaagatccagggccgtacaatacca
attgatggaaatttttttacatatacaagacatgaacctattggtgtatgtggccaaatc
attccttggaatttcccgttggttatgctcatttggaagatagggcctgcactgagctgt
ggaaacacagtggttgtcaaaccagcagagcaaactcctctcactgctctccacgtggca
tctttaataaaagaggcagggtttcctcctggagtagtgaatattgttcctggttatggg
cctacagcaggggcagccatttcttctcacatggatatagacaaagtagccttcacagga
tcaacagaggttggcaagttgatcaaagaagctgccgggaaaagcaatctgaagagggtg
accctggagcttggaggaaagagcccttgcattgtgttagctgatgccgacttggacaat
gctgttgaatttgcacaccatggggtattctaccaccagggccagtgttgtatagccgca
tccaggatttttgtggaagaatcaatttatgatgagtttgttcgaaggagtgttgagcgg
gctaagaagtatatccttggaaatcctctgaccccaggagtcactcaaggccctcagatt
gacaaggaacaatatgataaaatacttgacctcattgagagtgggaagaaagaaggggcc
aaactggaatgtggaggaggcccgtgggggaataaaggctactttgtccagcccacagtg
ttctctaatgttacagatgagatgcgcattgccaaagaggagatttttggaccagtgcag
caaatcatgaagtttaaatctttagatgacgtgatcaaaagagcaaacaatactttctat
ggcttatcagcaggagtgtttaccaaagacattgataaagccataacaatctcctctgct
ctgcaggcaggaacagtgtgggtgaattgctatggcgtgctgctgacttgggctaagact
accccagccctcagcagcactccaggccccttcctgctgaatgaaaggtcatggaacaat
ccagaagagctgcatcccttactgcatgctgctagccagtgccctcacagctctcactgt
gcttttcaagtcaaagcataccagggaagcagctatggcaaagaacagcagttcagtggt
ggagaagaggaggctgcagaaaagtaa

>gi568815589r:72801211_73053000|GENSCAN_predicted_peptide_6|185_aa
MRESLEPLGNWLSDCDQNADRNMDSEDQADEVSDGNKEFIGNWSKALAQKALDTALATAS
EDETIRLGSFHAMLSLQVFRLVPRQEPDAGAELPHRTSTREVLSGNGVRAPNRVLTRALP
SGAVGMGPLPSRPRMGAPPAACTLSLEMLQAFTPALANSHVGCAQQSHGDRATRGLRTTF
LTPEC

>gi568815589r:72801211_73053000|GENSCAN_predicted_CDS_6|558_bp
atgagagaaagtttggaacctcttggaaactggttaagtgattgtgaccaaaacgctgat
agaaatatggacagtgaagaccaggctgatgaggtctcagatggaaataaggaatttatt
ggaaactggagcaaagccttggctcaaaaggctttagacactgctctggccactgcttca
gaggatgaaaccataaggcttggcagcttccatgcaatgttaagtctgcaggtattcaga
ctggtgcccaggcaggaacctgatgcaggggcagagctcccacataggacttctactaga
gaagtgctaagtggaaatggggttagagccccaaacagagtcctcaccagggcattgcct
agtggagctgtaggaatggggccactgccctctaggcccagaatgggagcgccgccagca
gcctgtactctgagcctggaaatgctgcaggcattcactccagcccttgcaaacagccat
gtgggttgtgcccagcaaagccatggggacagggctaccagaggcctcaggaccacattt
ctcacaccagaatgctga

>gi568815589r:72801211_73053000|GENSCAN_predicted_peptide_7|217_aa
MLTLSNKIQNRERFITGSRVPHGDVHFERSDSKLVLSSFHFPMGAGDLASGEMEITILKP
SPFSCLLDKQAKPYSNLENSHKKIKILDQVERILIPVKSQCLSSSHLKVNNVGLDKEKCQ
ALKTSVFLTGTQCFRADGPAFQALCYMIPCAHSLRLLIKNSPLSLKFTDSSWNYQTVQHI
YSAMNYITEISITMPPYSVDVINRNITRHLLPLEEIA

>gi568815589r:72801211_73053000|GENSCAN_predicted_CDS_7|654_bp
atgctgactctctcaaacaaaatccagaaccgcgaaagatttatcactggaagcagagtt
ccccacggggacgtccattttgaacgaagcgactccaaacttgttctctcgagtttccac
tttcccatgggtgctggtgatctggcctctggagaaatggagatcaccatcttaaaaccc
tcgcccttcagttgcctcctggacaagcaggcaaagccatactccaatttggaaaattct
cacaaaaaaattaaaatactggatcaagtggaaaggatcctgattccagtcaagagtcag
tgtctcagttccagccatctgaaagtcaacaatgtaggcctggacaaagagaagtgccag
gctctgaagacctctgtgttcctaactggaacacagtgctttagagcagatgggcctgcc
tttcaagctctgtgctacatgattccatgtgcacattctctcaggctgctcattaagaat
tctcctttgtcactgaaattcactgactcctcatggaattaccagacggttcaacatatt
tatagtgccatgaattacattactgaaataagtattacaatgccaccctattcggtggac
gtcataaacagaaacataacaagacatctgcttcctctggaggaaattgcatga

>gi568815589r:72801211_73053000|GENSCAN_predicted_peptide_8|408_aa
MQTLTPQLSGPQIRHSEGDKTYPTPSYEGPHIEMRGSPPYAETRNPCPYSEDGSPWLEST
NWEVGVPSGSPYQTEEQEEDEKAFQHYVKQKWQSGHSCLLSDLGGKIFSLPPRKERESKQ
IVQDESDPIAKDDTGKAEAFAPNAFPLTPLTVKSPSFPDPILATKASLPLFPAPSALDQA
PNSFPHRSKEGVFSPGLSLQAKFCPCLLLLLWKRLFVFLRTHTALPKSFSVFWFLHQIPH
TDPQDFWAQQPTLREPHIPCPLPEFILKTPGTECASVLSKNVAEKVGKASEPENLLQLGD
HPYLTLMEMRKKYGDVFLLKLGMVPVLVVNGMEMVKQIINAPLEFYQALNGFIALHVQDH
LATYGKDHIRDITDALINVCHNKYAATKTDTLNDSEIISTVSDLFGAX

>gi568815589r:72801211_73053000|GENSCAN_predicted_CDS_8|1224_bp
atgcaaacacttacacctcaactcagtggtccccaaatcagacacagtgaaggagataaa
acgtatcctactccatcctatgaaggtccacacattgaaatgagaggatcccctccatat
gcagagactagaaacccatgcccttattcagaggatggaagcccatggctagaatcaact
aactgggaagtgggtgtcccatctggatcaccatatcagactgaagagcaagaagaggat
gagaaagccttccagcactatgttaaacagaagtggcaaagtgggcattcttgtcttctt
tctgatcttggaggaaaaatcttcagtcttccaccaaggaaggagagagaatcaaagcag
atagtacaagatgaaagtgacccaatagcaaaagatgacactggaaaggcagaagccttt
gctccaaatgccttccctctgactccactcacagtgaaatctccgagcttcccagacccg
atcctggccacaaaagcctctctacccctctttcctgctcccagtgcccttgatcaggct
ccaaactccttcccacacaggtcaaaggaaggggtgttctcaccaggcctttccctccag
gcaaaattctgcccctgcctgctgctgctgctatggaagagactgtttgtgtttcttagg
acacacacagctttgccaaaatccttctctgtcttttggttcctgcaccagattcctcac
actgacccacaagatttctgggcacagcagcccacccttagggagcctcacatcccctgt
cctctgcctgagtttatcctcaaaacaccaggaacagaatgtgcttcagtgctttccaag
aatgttgctgagaaagttggcaaagcatctgagcctgagaatcttctccagcttggagat
catccttaccttacattaatggagatgaggaagaaatatggagatgtctttctcctcaaa
cttggcatggtgcctgtcttggtggtaaatggaatggaaatggtgaaacaaattataaat
gctcctctggagttttaccaggccctgaatgggtttattgcactacacgtacaagatcat
cttgctacctatggtaaggatcatatccgagacattactgatgctctgattaatgtatgc
cacaacaaatatgctgctaccaaaacagacaccttgaatgacagtgaaatcataagcacc
gtgagcgacctctttggagctgnn