GENSCAN 1.0	Date run:  5-Nov-116	Time: 02:50:40

Sequence gi568815588f:122293201_122529935 : 236735 bp : 44.13% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3296   3396  101  1  2   66   88    37 0.489   1.23
 1.02 Intr +   4568   4637   70  2  1   70  100   116 0.939  10.18
 1.03 Intr +   5804   5934  131  1  2   72   71   121 0.667   8.29
 1.04 Intr +   8234   8397  164  2  2   81   59    66 0.127   2.62
 1.05 Intr +  13269  13329   61  1  1   59   81    48 0.002  -1.01
 1.06 Intr +  36280  36371   92  1  2   34  121    77 0.399   5.24
 1.07 Intr +  37976  38058   83  0  2   97   73    90 0.931   7.76
 1.08 Intr +  39236  39313   78  1  0   81   84    39 0.783   2.55
 1.09 Intr +  41681  41779   99  1  0   93  110    15 0.955   4.51
 1.10 Intr +  43294  43494  201  0  0   75  -43   235 0.285   8.58
 1.11 Intr +  44817  44852   36  2  0   88   92    20 0.206   0.86
 1.12 Term +  51535  51696  162  0  0  101   47   120 0.983   7.14
 1.13 PlyA +  52479  52484    6                               1.05

 2.00 Prom +  54045  54084   40                              -3.56
 2.01 Init +  54285  54450  166  2  1   61   84    67 0.491   3.40
 2.02 Term +  75448  75611  164  2  2   49   42   132 0.475   2.80
 2.03 PlyA +  78899  78904    6                               1.05

 3.02 PlyA -  78974  78969    6                               1.05
 3.01 Sngl -  82107  81466  642  0  0   68   50   368 0.881  25.18
 3.00 Prom -  90929  90890   40                              -0.96

 4.00 Prom +  98232  98271   40                              -4.06
 4.01 Init + 100001 100083   83  1  2   63   75    87 0.049   5.34
 4.02 Intr + 107899 107981   83  1  2   75   55    75 0.042   2.18
 4.03 Intr + 113376 113473   98  1  2   63   98    79 0.098   6.13
 4.04 Intr + 119720 119845  126  1  0   82   91    58 0.987   6.38
 4.05 Intr + 122659 122802  144  0  0   69   89    92 0.995   7.88
 4.06 Intr + 124700 124768   69  1  0   55   84    61 0.750   1.78
 4.07 Intr + 130999 131063   65  0  2  104  116    33 0.950   5.22
 4.08 Intr + 131696 131759   64  2  1   70  110    13 0.933   0.42
 4.09 Term + 136424 136738  315  1  0  115   54   191 0.911  13.34
 4.10 PlyA + 138579 138584    6                               1.05

 5.04 PlyA - 139147 139142    6                               1.05
 5.03 Term - 141012 140854  159  0  0   28   44   139 0.391   1.44
 5.02 Intr - 143432 143300  133  1  1   72   -1   124 0.284   2.55
 5.01 Init - 156494 156454   41  2  2  105   87    39 0.570   5.21
 5.00 Prom - 156809 156770   40                              -4.96

 6.00 Prom + 163666 163705   40                              -3.86
 6.01 Init + 168453 168924  472  2  1   99   73   990 0.448  92.29
 6.02 Term + 174393 174457   65  1  2   69   49    71 0.156  -0.65
 6.03 PlyA + 174575 174580    6                              -0.45

 7.04 PlyA - 174866 174861    6                               1.05
 7.03 Term - 175252 175169   84  1  0   55   43   242 0.962  14.05
 7.02 Intr - 180076 180015   62  2  2   68   94    16 0.468  -1.35
 7.01 Init - 183451 183241  211  1  1   44   59   167 0.522   8.35
 7.00 Prom - 183765 183726   40                              -3.16

 8.00 Prom + 189417 189456   40                              -4.36
 8.01 Init + 190149 190212   64  2  1   38   97    21 0.316  -0.69
 8.02 Intr + 195702 195801  100  1  1   99   42   118 0.926   7.47
 8.03 Intr + 196222 196426  205  1  1   68  110   364 0.913  35.80
 8.04 Intr + 197543 197597   55  1  1   46   46    13 0.276  -8.55
 8.05 Intr + 198844 199004  161  2  2   75   85   118 0.712   9.91
 8.06 Intr + 213491 213685  195  1  0   59   66   323 0.953  26.81
 8.07 Intr + 215456 215570  115  1  1  117  102   101 0.999  14.42
 8.08 Intr + 216896 216953   58  0  1  104   94    97 0.686   9.84
 8.09 Intr + 218770 218865   96  1  0   35   75   113 0.823   3.82
 8.10 Term + 220991 221159  169  2  1   83   48   339 0.997  26.75
 8.11 PlyA + 221685 221690    6                              -1.95

 9.05 PlyA - 221726 221721    6                              -3.24
 9.04 Term - 222711 222595  117  0  0   78   38   161 0.951   8.64
 9.03 Intr - 223270 223174   97  0  1   48  106    37 0.754   1.51
 9.02 Intr - 226192 226060  133  2  1   72   56    89 0.790   3.80
 9.01 Intr - 226392 226249  144  1  0  100   48    37 0.569   1.15

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  14648  14501  148  0  1   35   85   122 0.889   5.89
S.002 Term -  94471  94415   57  1  0   68   49    76 0.846  -0.61
S.003 Init -  97215  97123   93  0  0   74  115    37 0.848   5.38
S.004 Init + 100001 100141  141  1  0   63   72   152 0.910  11.23


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:122293201_122529935|GENSCAN_predicted_peptide_1|425_aa
MSLRLCFRMRSQWLLSGALLNEVNILQSNFAAERCVDVMIARLKPSTIKKFYEAGCKYKE
EQLTTGCEKWLEMNLVPLGGTQIHLHKIPQDLLHKVLKSPRSCLHRQSRAITEGKRALCG
FRHVISHVPTLTTPQALPTSSEVDLQWLPLLKLEGDEDIAAAGQLSNSQEVPQPVCFPEN
CCFLDRDIGRSLRPLFLCLRLHGITKGKDLEVLRHLNFFPESWLDQVTVNHYHALENGGD
MVHLKDLNTQAVRFGLLFNQENTTYSKTIALYGFFFKIKGLKHDTTSYSFYMQRIKHTDL
ESPSAVYEHNHVSLRAARLVKYEIRAEALVDGKWQEFRTNQIKQKFGLTTSSCKSHASVH
TLKIQTVGIPIYRSTNSQAVCPESAKPRFKCSVDSMASGCPVGLADVGQRAPMAAPHDFE
LCDFE

>gi568815588f:122293201_122529935|GENSCAN_predicted_CDS_1|1278_bp
atgagtttaaggttgtgcttccgtatgagatcccagtggctactctcgggtgccctgctc
aatgaagtgaacatacttcaaagcaattttgctgcagagaggtgcgtggatgtgatgata
gccagactcaagccaagcaccatcaagaaattctacgaggccggctgcaagtacaaggaa
gagcagctcaccaccggctgcgagaagtggctggaaatgaacttggttcctctagggggg
acgcagatccacctccacaaaatcccacaggacctgctccacaaagtgctgaagtccccc
aggagctgtctgcacagacagtccagggctatcactgaagggaaaagagccctgtgtggc
ttcaggcatgtcatcagccatgtgcccacgctgaccactccccaggctctgcccacatct
tctgaggttgatctccagtggctgcctttgttaaagcttgagggagatgaggacattgca
gctgcggggcagttaagcaactcacaggaggttccacagccagtctgctttcctgagaac
tgttgctttctggaccgggacataggacggagcttgaggccgctcttcctctgcttgcgt
ctgcacggcatcaccaaaggcaaggatctggaggtgctgcggcaccttaacttcttccca
gagtcatggctcgaccaggttacagtcaaccattaccacgcactggagaatgggggcgac
atggtccacctgaaagatcttaacacccaggctgtgagatttgggctgctctttaaccag
gagaatacaacttattcgaaaacgattgctctatatggattcttctttaagataaaggga
ctcaaacatgatactacctcttatagtttttacatgcagagaataaagcacacagacctg
gaatctccctctgcggtctacgagcacaaccacgtcagcctgcgagcggcacgcctggtg
aagtatgagatcagagcagaggccctggttgacggcaagtggcaggagttcaggacaaac
cagatcaagcagaagtttgggttgaccacgtcatcctgcaaaagccatgcaagtgttcac
accttgaaaatccaaactgtgggcatcccaatctataggagcactaactcacaggcggtg
tgcccagagtcggccaagccgcgtttcaagtgctccgtggactcaatggctagtggctgc
cctgtgggcttggcagatgtgggacaaagggctcctatggctgctcctcatgactttgag
ctctgtgactttgaatga

>gi568815588f:122293201_122529935|GENSCAN_predicted_peptide_2|109_aa
MVAFSSLELNVPCSFCSGLLESWDRVVQGPLLTCWRERGHVEENLSPTTSPNCQTSPRKP
RQGVRKAVIRITCNGTGQIIVNGIRACDFWFSQLRMGGITMGILSIVQR

>gi568815588f:122293201_122529935|GENSCAN_predicted_CDS_2|330_bp
atggtagcattcagtagtttggagctcaatgtgccttgcagcttctgctctggcctcttg
gagtcttgggaccgtgtagtgcaggggcctctactaacctgctggagggaacgcggccat
gtggaggagaacctcagcccgaccaccagccccaattgccagacatcccctcgaaagcca
cgccaaggggtcaggaaagccgtgattcgcataacttgcaatgggactgggcaaataatt
gtgaatggaattcgtgcttgtgacttctggttctcacagctgcggatgggggggatcacc
atgggaattctgagtattgttcagcgctga

>gi568815588f:122293201_122529935|GENSCAN_predicted_peptide_3|213_aa
MPGDARPAGTALEGGAPTGATGNPRAAARTAPRAGFLGGRRRRGARRPRDRRGPPALPRR
APLRADVGKTIGDPREEDAAPSRCPKPGQVSRPGGLQVLWRVARTCAEGAPAPHSPAPTA
PLRTPPRSPQREPRSSSPAAPQPPPPRAWPRPPPLLQRGRVLQAKLYRGLGPEHPRRRGP
GSHRGSAARSGVRDGQPAHCARVPTLPQPSDGG

>gi568815588f:122293201_122529935|GENSCAN_predicted_CDS_3|642_bp
atgcccggggacgcgcgccccgcgggcacagccctggagggaggcgctccgaccggcgcc
accgggaatccccgggcagctgcgcgcaccgcgccccgagcgggatttctcggggggcgg
agacgccgaggagctcgtcggccccgcgaccgccgcgggcctcccgccctcccccgccgg
gcgccgctgagggctgacgtcgggaaaacaatcggggacccacgggaagaagacgccgcc
ccctcccgctgccccaagccagggcaggtgagccggcccggcggcctccaggtgctgtgg
cgcgtggcgcggacgtgcgcagagggggcgccggctccgcactcaccagcacccaccgcc
cctctgcggacgcctccccgctcgccacagcgggaaccgcgctccagcagcccggcagcc
ccgcagccgccgccacctcgcgcctggccccgtccaccacccctgctccagcgcggccgc
gttcttcaagctaaactttaccgcggcctcggcccggagcacccgcgccgccgcggcccc
ggctcccacagaggctcggctgcccggagcggcgtccgcgacggccagcccgcgcactgc
gcacgcgtccccacgctgcctcagccctcagacggcggctga

>gi568815588f:122293201_122529935|GENSCAN_predicted_peptide_4|348_aa
MPYVDRQNRICGFLDIEENENSGKFLRREKAGGLHAEACGEKSVVSLELNTLKLEVMNAG
MRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPNSDNLSRHGECGKKQVSYRTDIV
GGVPIITPTQKEEVNECGESIDRNNLKRSQSHLPYFTPKPPQDSAVIKAGYCVKQGAVMK
NWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRT
FYVQEHPPGPSESKHAFRPTNAATATSHSTASRSNSLVSTFTMEKRGFYESLAKVKPGNF
KVQTVSPREPASKVTEQALLRPQSKNGPQEKDCDLVDLDDASLPVSDV

>gi568815588f:122293201_122529935|GENSCAN_predicted_CDS_4|1047_bp
atgccttatgtggatcgtcagaatcgcatttgtggttttctagacattgaagaaaatgaa
aacagtgggaaatttcttcgaagagaaaaggcaggaggactacatgcagaggcttgtggg
gagaagagcgtggtgtctctggagctgaacactctgaagctagaggttatgaatgcagga
atgaggaagtacttcctacaagccaatgatcagcaggacctagtggaatgggtaaatgtg
ttaaacaaagctataaaaattacagtaccaaagcagtcagactcacagcctaattctgat
aacctaagtcgccatggtgaatgtgggaaaaagcaagtgtcttacagaactgatattgtt
ggtggcgtacccatcattactcccactcagaaagaagaagtaaatgaatgtggtgaaagt
attgacagaaataatctgaaacggtcacaaagccatcttccttactttactcctaaacca
cctcaagatagtgcggttatcaaagctggatattgtgtaaaacaaggagcagtgatgaaa
aactggaagagaagatattttcaattggatgaaaacacaataggctacttcaaatctgaa
ctggaaaaggaacctcttcgtgtaataccacttaaagaggttcataaagtccaggaatgt
aagcaaagcgacataatgatgagggacaacctctttgaaattgtaacaacgtctcgaact
ttctatgtgcaggagcatccccccggtccttcagaatccaaacacgctttccgtcctacc
aacgcagccaccgccacctcacattccacagcctctcgcagcaactctttggtctcaacc
tttaccatggagaagcgaggattttacgagtctcttgccaaggtcaagccagggaacttc
aaggtccagactgtctctccaagagaaccagcttccaaagtgactgaacaagctctgtta
agacctcaaagtaaaaatggccctcaggaaaaagattgtgacctagtagacttggacgat
gcgagccttccggtcagtgacgtgtga

>gi568815588f:122293201_122529935|GENSCAN_predicted_peptide_5|110_aa
MVNPESMLEMKEARFLVDIFVVFLGLLCAACRTLKTPIDPTPSGQSFSTWKKPVSLYQKT
QLHIWSSINKTIAAVDKHHGNNQVSKTQWERKEHRNISHFQGSRLLDKYD

>gi568815588f:122293201_122529935|GENSCAN_predicted_CDS_5|333_bp
atggtgaaccctgaaagcatgctggaaatgaaagaagccagattcctcgtggacatcttt
gtcgtcttcttaggtctcctgtgtgctgcatgtcgtacactgaagacaccaattgaccca
actccatcaggtcaaagcttctccacatggaaaaaacctgttagcctataccaaaaaaca
cagctacatatttggagcagcatcaacaagaccatagcagcagtggacaaacaccatggt
aacaatcaggtgtccaagacccaatgggaaagaaaggaacaccggaacatcagtcacttt
caaggaagcaggctcctggacaagtatgactga

>gi568815588f:122293201_122529935|GENSCAN_predicted_peptide_6|178_aa
MQIPRAALLPLLLLLLAAPASAQLSRAGRSAPLAAGCPDRCEPARCPPQPEHCEGGRARD
ACGCCEVCGAPEGAACGLQEGPCGEGLQCVVPFGVPASATVRRRAQAGLCVCASSEPVCG
SDANTYANLCQLRAASRRSERLHRPPVIVLQRGACGQALYWLLKSPGDHRGDMFISKR

>gi568815588f:122293201_122529935|GENSCAN_predicted_CDS_6|537_bp
atgcagatcccgcgcgccgctcttctcccgctgctgctgctgctgctggcggcgcccgcc
tcggcgcagctgtcccgggccggccgctcggcgcctttggccgccgggtgcccagaccgc
tgcgagccggcgcgctgcccgccgcagccggagcactgcgagggcggccgggcccgggac
gcgtgcggctgctgcgaggtgtgcggcgcgcccgagggcgccgcgtgcggcctgcaggag
ggcccgtgcggcgaggggctgcagtgcgtggtgcccttcggggtgccagcctcggccacg
gtgcggcggcgcgcgcaggccggcctctgtgtgtgcgccagcagcgagccggtgtgcggc
agcgacgccaacacctacgccaacctgtgccagctgcgcgccgccagccgccgctccgag
aggctgcaccggccgccggtcatcgtcctgcagcgcggagcctgcggccaagctttgtac
tggctgctgaagtccccgggagaccacaggggtgacatgttcatctccaagagatga

>gi568815588f:122293201_122529935|GENSCAN_predicted_peptide_7|118_aa
MQGLQAQDNWDRVPANGQSLGGRKRGPGILIFTLNAGSPPLNFTCQDWNVGSTPLDEPQA
PEGKLDACSRCCSPETRVLEGQADKHPSPSQCLEDDDDDDDDDDDDDDNDNTLILPEF

>gi568815588f:122293201_122529935|GENSCAN_predicted_CDS_7|357_bp
atgcaagggctgcaggcccaggacaactgggaccgagtgcctgcaaacggccagtcgctg
ggtggcaggaagagaggacctggaatattgatctttacactaaatgcagggtccccgcca
ctgaactttacctgtcaggactggaatgtgggctccacccctctggacgagccacaggca
cctgagggcaagttggatgcctgcagcaggtgctgctcgcctgagacacgagtgttagaa
ggacaagccgacaaacacccaagcccctcccagtgccttgaagatgatgatgatgatgat
gatgatgatgatgatgatgatgacaatgacaacacgctaatattgcctgagttctag

>gi568815588f:122293201_122529935|GENSCAN_predicted_peptide_8|405_aa
MLAALNGPFVVLKISNEKYLLGQEDPNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSK
REVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKI
DHQWHAGYTSFWKQLCVCCLGGITKRMKEIRKTEKAEQNQQKLCLRNENHLHGSLSYETV
AQPPAKPFKSNPVKLGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGG
KELGLRNSDMDYIQTDAIINDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGK
AITKKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVII
SINGQSVVSANDVSDVIKRESTLNMVVRRGNEDIMITVIPEEIDP

>gi568815588f:122293201_122529935|GENSCAN_predicted_CDS_8|1218_bp
atgttggctgctcttaatgggccatttgttgtgttaaaaatcagtaatgagaaatattta
ctagggcaggaagatcccaacagtttgcgccataaatataactttatcgcggacgtggtg
gagaagatcgcccctgccgtggttcatatcgaattgtttcgcaagcttccgttttctaaa
cgagaggtgccggtggctagtgggtctgggtttattgtgtcggaagatggactgatcgtg
acaaatgcccacgtggtgaccaacaagcaccgggtcaaagttgagctgaagaacggtgcc
acttacgaagccaaaatcaaggatgtggatgagaaagcagacatcgcactcatcaaaatt
gaccaccagtggcacgctggttacacctccttctggaaacaactctgcgtgtgctgtttg
ggtgggataacaaagaggatgaaagagatcaggaaaaccgagaaggcagaacagaaccag
cagaaactgtgcttgaggaatgaaaatcacctacacggctccttgtcatatgagactgtg
gcccagcctcctgcaaagccatttaagagtaacccagtgaagctgggcaagctgcctgtc
ctgctgcttggccgctcctcagagctgcggccgggagagttcgtggtcgccatcggaagc
ccgttttcccttcaaaacacagtcaccaccgggatcgtgagcaccacccagcgaggcggc
aaagagctggggctccgcaactcagacatggactacatccagaccgacgccatcatcaac
gacggtgaagtgattggaattaacactttgaaagtgacagctggaatctcctttgcaatc
ccatctgataagattaaaaagttcctcacggagtcccatgaccgacaggccaaaggaaaa
gccatcaccaagaagaagtatattggtatccgaatgatgtcactcacgtccagcaaagcc
aaagagctgaaggaccggcaccgggacttcccagacgtgatctcaggagcgtatataatt
gaagtaattcctgataccccagcagaagctggtggtctcaaggaaaacgacgtcataatc
agcatcaatggacagtccgtggtctccgccaatgatgtcagcgacgtcattaaaagggaa
agcaccctgaacatggtggtccgcaggggtaatgaagatatcatgatcacagtgattccc
gaagaaattgacccatag

>gi568815588f:122293201_122529935|GENSCAN_predicted_peptide_9|163_aa
XSPPPHTPTPNMPSTVLGALWLCKKMDSMKECVLRGFFPPVADVTVQGGWAQPYGLNDGL
GPVELQPQSESRQGNRQLGQHMASVRAPGRGVRLKQAEETTILEVFKCEVGVPGQAAPMG
HRVSWVIQPESEETCQCCNGPQAAQPPSTNTDEGCAQLDRPCI

>gi568815588f:122293201_122529935|GENSCAN_predicted_CDS_9|492_bp
ncctcaccccctcctcacacccccactcccaatatgcccagcacagtcctgggtgcactg
tggttatgcaaaaagatggattccatgaaagaatgcgtgctaagaggattctttcctcca
gtggcagatgtgactgtccagggaggctgggctcagccctatggcctcaatgatggactt
ggccctgtggagctgcagccccagagtgagtcccgacaagggaacaggcagttaggacag
cacatggccagcgtgcgagctcctggcaggggagtccgcctaaagcaagcagaagaaaca
actattctggaggtcttcaaatgtgaggtgggggttccaggacaagcagcccccatggga
cacagggtctcatgggtcattcaaccagagagcgaagagacgtgccagtgttgcaacggg
ccacaagctgctcagccgccgagcaccaacactgatgagggctgtgctcaactggaccgc
ccctgcatttaa