(Circular) (Six-base) MAPSORT of: pF1KE1064.seq Check: 3857 from: 1 to: 3413 pF1KE1064 3413 bp With 182 enzymes: SgfI * February 26, 2009 15:00 .. AccI GT'mk_AC Cuts at: 112 451 112 Size: 339 3074 Acc65I G'GTAC_C Cuts at: 429 429 Size: 3413 AclI AA'CG_TT Cuts at: 3253 3253 Size: 3413 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 136 389 1238 1670 2417 2685 136 Size: 253 849 432 747 268 864 Fragments arranged by size: 864 849 747 432 268 253 AflIII A'CryG_T Cuts at: 765 1869 2846 765 Size: 1104 977 1332 Fragments arranged by size: 1332 1104 977 AgeI A'CCGG_T Cuts at: 1801 1801 Size: 3413 AlwNI CAG_nnn'CTG Cuts at: 718 2285 718 Size: 1567 1846 ApaLI G'TGCA_C Cuts at: 2183 2183 Size: 3413 ApoI r'AATT_y Cuts at: 417 2766 3022 417 Size: 2349 256 808 Fragments arranged by size: 2349 808 256 AseI AT'TA_AT Cuts at: 20 20 Size: 3413 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 3413 AvaI C'yCGr_G Cuts at: 433 433 Size: 3413 BamHI G'GATC_C Cuts at: 438 438 Size: 3413 BanI G'GyrC_C Cuts at: 429 843 1091 1126 429 Size: 414 248 35 2716 Fragments arranged by size: 2716 414 248 35 BanII G_rGCy'C Cuts at: 427 1457 427 Size: 1030 2383 BbeI G_GCGC'C Cuts at: 847 1095 847 Size: 248 3165 BbsI GAAGACnn'nnnn_ Cuts at: 153 153 Size: 3413 BciVI GTATCCnnnnn_n' Cuts at: 1311 2072 3413 1311 Size: 761 1341 1311 Fragments arranged by size: 1341 1311 761 BclI T'GATC_A Cuts at: 933 933 Size: 3413 BglII A'GATC_T Cuts at: 928 2965 928 Size: 2037 1376 BlpI GC'TnA_GC Cuts at: 525 525 Size: 3413 Bme1580I G_kGCm'C Cuts at: 1038 1131 2187 1038 Size: 93 1056 2264 Fragments arranged by size: 2264 1056 93 BmrI ACTGGGnnnn_n' Cuts at: 625 706 1041 3185 625 Size: 81 335 2144 853 Fragments arranged by size: 2144 853 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1780 1780 Size: 3413 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 589 1468 1960 2258 589 Size: 879 492 298 1744 Fragments arranged by size: 1744 879 492 298 BsaI GGTCTCn'nnnn_ Cuts at: 218 3117 218 Size: 2899 514 BsaAI yAC'GTr Cuts at: 766 766 Size: 3413 BsaBI GATnn'nnATC Cuts at: 6 927 2964 6 Size: 921 2037 455 Fragments arranged by size: 2037 921 455 BsaHI Gr'CG_yC Cuts at: 844 1092 1794 3290 844 Size: 248 702 1496 967 Fragments arranged by size: 1496 967 702 248 BsaWI w'CCGG_w Cuts at: 602 1123 1801 2075 2222 2633 602 Size: 521 678 274 147 411 1382 Fragments arranged by size: 1382 678 521 411 274 147 BseYI C'CCAG_C Cuts at: 838 1596 2173 2669 838 Size: 758 577 496 1582 Fragments arranged by size: 1582 758 577 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 275 275 Size: 3413 BsiEI CG_ry'CG Cuts at: 104 252 955 1001 2209 104 Size: 148 703 46 1208 1308 Fragments arranged by size: 1308 1208 703 148 46 BsiHKAI G_wGCw'C Cuts at: 427 1205 1395 2187 427 Size: 778 190 792 1653 Fragments arranged by size: 1653 792 778 190 Bsp1286I G_dGCh'C Cuts at: 427 1038 1131 1205 1395 1457 2187 427 Size: 611 93 74 190 62 730 1653 Fragments arranged by size: 1653 730 611 190 93 74 62 BspEI T'CCGG_A Cuts at: 2633 2633 Size: 3413 BspHI T'CATG_A Cuts at: 2589 2589 Size: 3413 BspMI ACCTGCnnnn'nnnn_ Cuts at: 463 677 979 1360 463 Size: 214 302 381 2516 Fragments arranged by size: 2516 381 302 214 BsrBI CCG'CTC Cuts at: 50 1705 1759 3243 3408 50 Size: 1655 54 1484 165 55 Fragments arranged by size: 1655 1484 165 55 54 BsrDI GCAATG_nn' Cuts at: 1325 1325 Size: 3413 BsrFI r'CCGG_y Cuts at: 1411 1592 1801 1411 Size: 181 209 3023 Fragments arranged by size: 3023 209 181 BssSI C'ACGA_G Cuts at: 1684 2042 1684 Size: 358 3055 BstAPI GCAn_nnn'nTGC Cuts at: 790 790 Size: 3413 BstBI TT'CG_AA Cuts at: 1774 1774 Size: 3413 BstYI r'GATC_y Cuts at: 1 438 905 928 1263 1509 2521 2607 2619 Size: 437 467 23 335 246 1012 86 12 Cuts at: 2619 2965 1 Size: 346 449 Fragments arranged by size: 1012 467 449 437 346 335 246 86 23 12 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 1363 1544 1707 1363 Size: 181 163 3069 Fragments arranged by size: 3069 181 163 BtsI GCAGTG_nn' Cuts at: 262 656 262 Size: 394 3019 DraI TTT'AAA Cuts at: 412 412 Size: 3413 DrdI GACnn_nn'nnGTC Cuts at: 1119 1977 1119 Size: 858 2555 EaeI y'GGCC_r Cuts at: 998 1172 1563 1590 2935 998 Size: 174 391 27 1345 1476 Fragments arranged by size: 1476 1345 391 174 27 EagI C'GGCC_G Cuts at: 998 998 Size: 3413 EarI CTCTTCn'nnn_ Cuts at: 304 408 1436 1646 304 Size: 104 1028 210 2071 Fragments arranged by size: 2071 1028 210 104 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1621 1931 2077 3223 1621 Size: 310 146 1146 1811 Fragments arranged by size: 1811 1146 310 146 EcoICRI GAG'CTC Cuts at: 425 425 Size: 3413 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 136 389 1238 1670 2417 2685 136 Size: 253 849 432 747 268 864 Fragments arranged by size: 864 849 747 432 268 253 EcoO109I rG'GnC_Cy Cuts at: 552 552 Size: 3413 EcoRI G'AATT_C Cuts at: 417 417 Size: 3413 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 1432 1432 Size: 3413 FspI TGC'GCA Cuts at: 1194 1194 Size: 3413 HaeII r_GCGC'y Cuts at: 278 847 1095 2117 3096 278 Size: 569 248 1022 979 595 Fragments arranged by size: 1022 979 595 569 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 150 182 1255 1285 1287 1317 150 Size: 32 1073 30 2 30 2246 Fragments arranged by size: 2246 1073 32 30 30 2 HincII GTy'rAC Cuts at: 201 452 201 Size: 251 3162 HpaI GTT'AAC Cuts at: 201 201 Size: 3413 KasI G'GCGC_C Cuts at: 843 1091 843 Size: 248 3165 KpnI G_GTAC'C Cuts at: 433 433 Size: 3413 MluI A'CGCG_T Cuts at: 2846 2846 Size: 3413 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 145 2084 2268 145 Size: 1939 184 1290 Fragments arranged by size: 1939 1290 184 MscI TGG'CCA Cuts at: 1174 1174 Size: 3413 MslI CAynn'nnrTG Cuts at: 388 1402 1529 388 Size: 1014 127 2272 Fragments arranged by size: 2272 1014 127 MspA1I CmG'CkG Cuts at: 524 838 1198 2211 2456 524 Size: 314 360 1013 245 1481 Fragments arranged by size: 1481 1013 360 314 245 NaeI GCC'GGC Cuts at: 1594 1594 Size: 3413 NarI GG'CG_CC Cuts at: 844 1092 844 Size: 248 3165 NgoMIV G'CCGG_C Cuts at: 1592 1592 Size: 3413 NspI r_CATG'y Cuts at: 466 966 1873 466 Size: 500 907 2006 Fragments arranged by size: 2006 907 500 PciI A'CATG_T Cuts at: 1869 1869 Size: 3413 PmeI GTTT'AAAC Cuts at: 412 412 Size: 3413 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2552 2584 2552 Size: 32 3381 PstI C_TGCA'G Cuts at: 269 460 1145 269 Size: 191 685 2537 Fragments arranged by size: 2537 685 191 PvuI CG_AT'CG Cuts at: 104 104 Size: 3413 PvuII CAG'CTG Cuts at: 838 1198 838 Size: 360 3053 RsrII CG'GwC_CG Cuts at: 1608 1608 Size: 3413 SacI G_AGCT'C Cuts at: 427 427 Size: 3413 SalI G'TCGA_C Cuts at: 450 450 Size: 3413 SapI GCTCTTCn'nnn_ Cuts at: 1436 1646 1436 Size: 210 3203 SbfI CC_TGCA'GG Cuts at: 460 460 Size: 3413 ScaI AGT'ACT Cuts at: 2930 2930 Size: 3413 SfcI C'TryA_G Cuts at: 33 113 265 456 1141 2134 2325 33 Size: 80 152 191 685 993 191 1121 Fragments arranged by size: 1121 993 685 191 191 152 80 SfoI GGC'GCC Cuts at: 845 1093 845 Size: 248 3165 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 3413 SmaI CCC'GGG Cuts at: 435 435 Size: 3413 SmlI C'TyrA_G Cuts at: 568 1483 1975 2237 568 Size: 915 492 262 1744 Fragments arranged by size: 1744 915 492 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 3413 SphI G_CATG'C Cuts at: 466 966 466 Size: 500 2913 SspI AAT'ATT Cuts at: 319 319 Size: 3413 StyI C'CwwG_G Cuts at: 547 901 547 Size: 354 3059 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 996 1129 1588 1797 996 Size: 133 459 209 2612 Fragments arranged by size: 2612 459 209 133 TatI w'GTAC_w Cuts at: 2928 2928 Size: 3413 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2930 2962 2930 Size: 32 3381 Tth111I GACn'n_nGTC Cuts at: 1210 1210 Size: 3413 XbaI T'CTAG_A Cuts at: 444 444 Size: 3413 XcmI CCAnnnn_n'nnnnTGG Cuts at: 908 908 Size: 3413 XmaI C'CCGG_G Cuts at: 433 433 Size: 3413 Enzymes that do cut: AccI Acc65I AclI AcuI AflIII AgeI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BciVI BclI BglII BlpI Bme1580I BmrI BplI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BseYI BsgI BsiEI BsiHKAI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstYI BtgZI BtsI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HpaI KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NgoMIV NspI PciI PmeI PpiI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SfcI SfoI SgfI SmaI SmlI SpeI SphI SspI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI Enzymes that do not cut: AarI AatII AfeI AflII AhdI AleI AlfI AloI ApaI AscI AvrII BaeI BbvCI BcgI BfrBI BglI BmgBI BmtI BpmI Bpu10I BsaXI BseRI BsiWI BsmI BsmBI BsrGI BssHII BstEII BstXI BstZ17I Bsu36I BtgI ClaI CspCI DraIII EcoNI EcoRV FseI FspAI HindIII MfeI NcoI NdeI NheI NotI NruI NsiI PacI PasI PflMI PfoI PmlI PpuMI PshAI PsiI PspOMI PspXI PsrI SacII SanDI SexAI SfiI SgrAI SnaBI SrfI StuI SwaI XhoI XmnI ZraI