Result of FASTA (omim) for pF1KE1064
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1064, 100 aa
  1>>>pF1KE1064 100 - 100 aa - 100 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0313+/-0.0003; mu= 11.4498+/- 0.019
 mean_var=67.1871+/-13.222, 0's: 0 Z-trim(116.7): 27  B-trim: 55 in 1/55
 Lambda= 0.156470
 statistics sampled from 28128 (28155) to 28128 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.33), width:  16
 Scan time:  3.940

The best scores are:                                      opt bits E(85289)
NP_004772 (OMIM: 603657) vesicle-associated membra ( 100)  646 153.7 4.5e-38
XP_016858330 (OMIM: 603657) PREDICTED: vesicle-ass ( 122)  606 144.8 2.7e-35
NP_055046 (OMIM: 108600,185880) vesicle-associated ( 118)  463 112.5 1.4e-25
NP_055047 (OMIM: 185881) vesicle-associated membra ( 116)  461 112.0 1.9e-25
NP_001317054 (OMIM: 185881) vesicle-associated mem ( 118)  461 112.0 1.9e-25
NP_058439 (OMIM: 108600,185880) vesicle-associated ( 116)  457 111.1 3.5e-25
NP_001284367 (OMIM: 108600,185880) vesicle-associa ( 116)  457 111.1 3.5e-25
NP_954740 (OMIM: 108600,185880) vesicle-associated ( 117)  457 111.1 3.5e-25
NP_001172056 (OMIM: 606909) vesicle-associated mem ( 140)  280 71.2 4.4e-13
NP_003753 (OMIM: 606909) vesicle-associated membra ( 141)  280 71.2 4.4e-13
NP_003752 (OMIM: 603177) vesicle-associated membra ( 100)  222 58.0 2.9e-09
NP_006625 (OMIM: 607029) vesicle-associated membra ( 116)  192 51.3 3.6e-07
XP_016885552 (OMIM: 300053) PREDICTED: vesicle-ass ( 173)  166 45.5 2.9e-05
XP_016885249 (OMIM: 300053) PREDICTED: vesicle-ass ( 173)  166 45.5 2.9e-05
NP_001138621 (OMIM: 300053) vesicle-associated mem ( 179)  166 45.6   3e-05
NP_005629 (OMIM: 300053) vesicle-associated membra ( 220)  166 45.6 3.5e-05


>>NP_004772 (OMIM: 603657) vesicle-associated membrane p  (100 aa)
 initn: 646 init1: 646 opt: 646  Z-score: 804.5  bits: 153.7 E(85289): 4.5e-38
Smith-Waterman score: 646; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF
               10        20        30        40        50        60

               70        80        90       100
pF1KE1 ETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
       ::::::::::::::::::::::::::::::::::::::::
NP_004 ETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
               70        80        90       100

>>XP_016858330 (OMIM: 603657) PREDICTED: vesicle-associa  (122 aa)
 initn: 606 init1: 606 opt: 606  Z-score: 754.5  bits: 144.8 E(85289): 2.7e-35
Smith-Waterman score: 606; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)

               10        20        30        40        50        60
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF
               10        20        30        40        50        60

               70        80        90       100                    
pF1KE1 ETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS                    
       ::::::::::::::::::::::::::::::::::                          
XP_016 ETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIGELPFSKLIGKVFSMCSQTIDFVYKN
               70        80        90       100       110       120

XP_016 SD
         

>>NP_055046 (OMIM: 108600,185880) vesicle-associated mem  (118 aa)
 initn: 454 init1: 437 opt: 463  Z-score: 580.2  bits: 112.5 E(85289): 1.4e-25
Smith-Waterman score: 463; 73.1% identity (88.2% similar) in 93 aa overlap (4-96:23-115)

                                  10        20        30        40 
pF1KE1                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                             ::     ::::::::: ::.:::::.::::::::::::
NP_055 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

              50        60        70        80        90       100
pF1KE1 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
       ::::::::::::::::::::.::::::::::::::::  .  .. .:....:...    
NP_055 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT 
               70        80        90       100       110         

>>NP_055047 (OMIM: 185881) vesicle-associated membrane p  (116 aa)
 initn: 500 init1: 455 opt: 461  Z-score: 577.9  bits: 112.0 E(85289): 1.9e-25
Smith-Waterman score: 461; 81.3% identity (85.7% similar) in 91 aa overlap (5-94:22-112)

                                10        20        30        40   
pF1KE1                  MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKL
                            :     ::::::::: :::::::::::::::::::::::
NP_055 MSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL
               10        20        30        40        50        60

            50        60        70        80         90       100
pF1KE1 SELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIVWVVSS
       :::::::::::::::::::::::::::::::: ::  : :.   .:.::::.      
NP_055 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST  
               70        80        90       100       110        

>>NP_001317054 (OMIM: 185881) vesicle-associated membran  (118 aa)
 initn: 511 init1: 455 opt: 461  Z-score: 577.8  bits: 112.0 E(85289): 1.9e-25
Smith-Waterman score: 461; 81.3% identity (85.7% similar) in 91 aa overlap (5-94:24-114)

                                  10        20        30        40 
pF1KE1                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                              :     ::::::::: :::::::::::::::::::::
NP_001 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
               10        20        30        40        50        60

              50        60        70        80         90       100
pF1KE1 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIVWVVSS
       :::::::::::::::::::::::::::::::::: ::  : :.   .:.::::.      
NP_001 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST  
               70        80        90       100       110          

>>NP_058439 (OMIM: 108600,185880) vesicle-associated mem  (116 aa)
 initn: 437 init1: 437 opt: 457  Z-score: 573.0  bits: 111.1 E(85289): 3.5e-25
Smith-Waterman score: 457; 74.7% identity (87.9% similar) in 91 aa overlap (4-94:23-113)

                                  10        20        30        40 
pF1KE1                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                             ::     ::::::::: ::.:::::.::::::::::::
NP_058 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

              50        60        70        80        90       100
pF1KE1 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
       ::::::::::::::::::::.::::::::::::::::  .  .. .:....:.      
NP_058 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD   
               70        80        90       100       110         

>>NP_001284367 (OMIM: 108600,185880) vesicle-associated   (116 aa)
 initn: 437 init1: 437 opt: 457  Z-score: 573.0  bits: 111.1 E(85289): 3.5e-25
Smith-Waterman score: 457; 74.7% identity (87.9% similar) in 91 aa overlap (4-94:23-113)

                                  10        20        30        40 
pF1KE1                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                             ::     ::::::::: ::.:::::.::::::::::::
NP_001 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

              50        60        70        80        90       100
pF1KE1 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
       ::::::::::::::::::::.::::::::::::::::  .  .. .:....:.      
NP_001 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRG   
               70        80        90       100       110         

>>NP_954740 (OMIM: 108600,185880) vesicle-associated mem  (117 aa)
 initn: 453 init1: 437 opt: 457  Z-score: 573.0  bits: 111.1 E(85289): 3.5e-25
Smith-Waterman score: 457; 74.7% identity (87.9% similar) in 91 aa overlap (4-94:23-113)

                                  10        20        30        40 
pF1KE1                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                             ::     ::::::::: ::.:::::.::::::::::::
NP_954 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

              50        60        70        80        90       100
pF1KE1 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
       ::::::::::::::::::::.::::::::::::::::  .  .. .:....:.      
NP_954 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKYR  
               70        80        90       100       110         

>>NP_001172056 (OMIM: 606909) vesicle-associated membran  (140 aa)
 initn: 296 init1: 265 opt: 280  Z-score: 355.9  bits: 71.2 E(85289): 4.4e-13
Smith-Waterman score: 280; 38.5% identity (79.2% similar) in 96 aa overlap (3-98:41-135)

                                           10        20        30  
pF1KE1                             MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVN
                                     .::  .   : .....:::::::.:.:. :
NP_001 DDDVTGSVKSERRNLLEDDSDEEEDFFLGPSGPRFGP-RNDKIKHVQNQVDEVIDVMQEN
               20        30        40         50        60         

             40        50        60        70        80        90  
pF1KE1 VDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIII
       . ::.:: ..:.::.:....:. .:. : . . .:.:..::..::. ::   : .:....
NP_001 ITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILLLV
      70        80        90       100       110       120         

            100   
pF1KE1 IIVWVVSS   
       ::. .:     
NP_001 IIILIVMKYRT
     130       140

>>NP_003753 (OMIM: 606909) vesicle-associated membrane p  (141 aa)
 initn: 296 init1: 265 opt: 280  Z-score: 355.9  bits: 71.2 E(85289): 4.4e-13
Smith-Waterman score: 280; 38.5% identity (79.2% similar) in 96 aa overlap (3-98:42-136)

                                           10        20        30  
pF1KE1                             MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVN
                                     .::  .   : .....:::::::.:.:. :
NP_003 DDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGP-RNDKIKHVQNQVDEVIDVMQEN
              20        30        40         50        60        70

             40        50        60        70        80        90  
pF1KE1 VDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIII
       . ::.:: ..:.::.:....:. .:. : . . .:.:..::..::. ::   : .:....
NP_003 ITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILLLV
               80        90       100       110       120       130

            100   
pF1KE1 IIVWVVSS   
       ::. .:     
NP_003 IIILIVMKYRT
              140 




100 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:42:18 2016 done: Sat Nov  5 02:42:19 2016
 Total Scan time:  3.940 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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