Result of FASTA (ccds) for
pF1KE1064
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1064, 100 aa
1>>>pF1KE1064 100 - 100 aa - 100 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2446+/-0.000696; mu= 9.9856+/- 0.042
mean_var=62.7368+/-12.535, 0's: 0 Z-trim(109.6): 27 B-trim: 428 in 1/52
Lambda= 0.161925
statistics sampled from 10990 (11012) to 10990 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.338), width: 16
Scan time: 1.150
The best scores are: opt bits E(32554)
CCDS88.1 VAMP3 gene_id:9341|Hs108|chr1 ( 100) 646 158.6 5.8e-40
CCDS41740.1 VAMP1 gene_id:6843|Hs108|chr12 ( 118) 463 115.9 4.9e-27
CCDS32561.1 VAMP2 gene_id:6844|Hs108|chr17 ( 116) 461 115.4 6.7e-27
CCDS82064.1 VAMP2 gene_id:6844|Hs108|chr17 ( 118) 461 115.4 6.8e-27
CCDS44809.1 VAMP1 gene_id:6843|Hs108|chr12 ( 116) 457 114.5 1.3e-26
CCDS73422.1 VAMP1 gene_id:6843|Hs108|chr12 ( 116) 457 114.5 1.3e-26
CCDS31731.1 VAMP1 gene_id:6843|Hs108|chr12 ( 117) 457 114.5 1.3e-26
CCDS53430.1 VAMP4 gene_id:8674|Hs108|chr1 ( 140) 280 73.2 4.2e-14
CCDS1298.1 VAMP4 gene_id:8674|Hs108|chr1 ( 141) 280 73.2 4.2e-14
>>CCDS88.1 VAMP3 gene_id:9341|Hs108|chr1 (100 aa)
initn: 646 init1: 646 opt: 646 Z-score: 830.9 bits: 158.6 E(32554): 5.8e-40
Smith-Waterman score: 646; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)
10 20 30 40 50 60
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF
10 20 30 40 50 60
70 80 90 100
pF1KE1 ETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
::::::::::::::::::::::::::::::::::::::::
CCDS88 ETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
70 80 90 100
>>CCDS41740.1 VAMP1 gene_id:6843|Hs108|chr12 (118 aa)
initn: 454 init1: 437 opt: 463 Z-score: 598.8 bits: 115.9 E(32554): 4.9e-27
Smith-Waterman score: 463; 73.1% identity (88.2% similar) in 93 aa overlap (4-96:23-115)
10 20 30 40
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
:: ::::::::: ::.:::::.::::::::::::
CCDS41 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
::::::::::::::::::::.:::::::::::::::: . .. .:....:...
CCDS41 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
70 80 90 100 110
>>CCDS32561.1 VAMP2 gene_id:6844|Hs108|chr17 (116 aa)
initn: 500 init1: 455 opt: 461 Z-score: 596.4 bits: 115.4 E(32554): 6.7e-27
Smith-Waterman score: 461; 81.3% identity (85.7% similar) in 91 aa overlap (5-94:22-112)
10 20 30 40
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKL
: ::::::::: :::::::::::::::::::::::
CCDS32 MSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 SELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIVWVVSS
:::::::::::::::::::::::::::::::: :: : :. .:.::::.
CCDS32 SELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
70 80 90 100 110
>>CCDS82064.1 VAMP2 gene_id:6844|Hs108|chr17 (118 aa)
initn: 511 init1: 455 opt: 461 Z-score: 596.3 bits: 115.4 E(32554): 6.8e-27
Smith-Waterman score: 461; 81.3% identity (85.7% similar) in 91 aa overlap (5-94:24-114)
10 20 30 40
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
: ::::::::: :::::::::::::::::::::
CCDS82 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIVWVVSS
:::::::::::::::::::::::::::::::::: :: : :. .:.::::.
CCDS82 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
70 80 90 100 110
>>CCDS44809.1 VAMP1 gene_id:6843|Hs108|chr12 (116 aa)
initn: 437 init1: 437 opt: 457 Z-score: 591.3 bits: 114.5 E(32554): 1.3e-26
Smith-Waterman score: 457; 74.7% identity (87.9% similar) in 91 aa overlap (4-94:23-113)
10 20 30 40
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
:: ::::::::: ::.:::::.::::::::::::
CCDS44 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
::::::::::::::::::::.:::::::::::::::: . .. .:....:.
CCDS44 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD
70 80 90 100 110
>>CCDS73422.1 VAMP1 gene_id:6843|Hs108|chr12 (116 aa)
initn: 437 init1: 437 opt: 457 Z-score: 591.3 bits: 114.5 E(32554): 1.3e-26
Smith-Waterman score: 457; 74.7% identity (87.9% similar) in 91 aa overlap (4-94:23-113)
10 20 30 40
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
:: ::::::::: ::.:::::.::::::::::::
CCDS73 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
::::::::::::::::::::.:::::::::::::::: . .. .:....:.
CCDS73 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRG
70 80 90 100 110
>>CCDS31731.1 VAMP1 gene_id:6843|Hs108|chr12 (117 aa)
initn: 453 init1: 437 opt: 457 Z-score: 591.3 bits: 114.5 E(32554): 1.3e-26
Smith-Waterman score: 457; 74.7% identity (87.9% similar) in 91 aa overlap (4-94:23-113)
10 20 30 40
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
:: ::::::::: ::.:::::.::::::::::::
CCDS31 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
::::::::::::::::::::.:::::::::::::::: . .. .:....:.
CCDS31 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKYR
70 80 90 100 110
>>CCDS53430.1 VAMP4 gene_id:8674|Hs108|chr1 (140 aa)
initn: 296 init1: 265 opt: 280 Z-score: 366.6 bits: 73.2 E(32554): 4.2e-14
Smith-Waterman score: 280; 38.5% identity (79.2% similar) in 96 aa overlap (3-98:41-135)
10 20 30
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVN
.:: . : .....:::::::.:.:. :
CCDS53 DDDVTGSVKSERRNLLEDDSDEEEDFFLGPSGPRFGP-RNDKIKHVQNQVDEVIDVMQEN
20 30 40 50 60
40 50 60 70 80 90
pF1KE1 VDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIII
. ::.:: ..:.::.:....:. .:. : . . .:.:..::..::. :: : .:....
CCDS53 ITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILLLV
70 80 90 100 110 120
100
pF1KE1 IIVWVVSS
::. .:
CCDS53 IIILIVMKYRT
130 140
>>CCDS1298.1 VAMP4 gene_id:8674|Hs108|chr1 (141 aa)
initn: 296 init1: 265 opt: 280 Z-score: 366.6 bits: 73.2 E(32554): 4.2e-14
Smith-Waterman score: 280; 38.5% identity (79.2% similar) in 96 aa overlap (3-98:42-136)
10 20 30
pF1KE1 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVN
.:: . : .....:::::::.:.:. :
CCDS12 DDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGP-RNDKIKHVQNQVDEVIDVMQEN
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE1 VDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIII
. ::.:: ..:.::.:....:. .:. : . . .:.:..::..::. :: : .:....
CCDS12 ITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILLLV
80 90 100 110 120 130
100
pF1KE1 IIVWVVSS
::. .:
CCDS12 IIILIVMKYRT
140
100 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:42:18 2016 done: Sat Nov 5 02:42:18 2016
Total Scan time: 1.150 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]