GENSCAN 1.0	Date run:  8-Nov-116	Time: 09:35:30

Sequence gi568815596r:46805466_47009171 : 203706 bp : 48.13% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    153    348  196  2  1   25   13   189 0.181   4.09
 1.02 Term +   8723   8946  224  0  2  127   48   141 0.952  11.08
 1.03 PlyA +  10280  10285    6                              -0.45

 2.08 PlyA -  10653  10648    6                              -0.45
 2.07 Term -  14570  14070  501  2  0  -42   49   213 0.057  -1.12
 2.06 Intr -  15757  15401  357  1  0  -19   41   243 0.155   4.35
 2.05 Intr -  16443  16342  102  0  0   52   66    62 0.506   0.77
 2.04 Intr -  20455  20276  180  1  0   57  105    47 0.809   3.36
 2.03 Intr -  22598  22423  176  0  2  105   64    96 0.834   8.56
 2.02 Intr -  23642  23590   53  1  2   55   81    54 0.408  -0.05
 2.01 Init -  30693  30665   29  0  2   60  110    30 0.272   1.51
 2.00 Prom -  39339  39300   40                              -3.06

 3.00 Prom +  40681  40720   40                              -2.36
 3.01 Init +  51121  51243  123  0  0   47   78    73 0.168   2.38
 3.02 Intr +  58055  58148   94  1  1   50   92    79 0.578   4.04
 3.03 Intr +  60494  60665  172  0  1   48   64    66 0.171  -0.80
 3.04 Intr +  63756  63816   61  0  1   96   77    19 0.485   0.34
 3.05 Term +  65536  65676  141  0  0  129   39    80 0.536   5.13
 3.06 PlyA +  65864  65869    6                              -1.75

 4.03 PlyA -  66154  66149    6                               1.05
 4.02 Term -  66708  66549  160  2  1   32   49   132 0.281   1.11
 4.01 Init -  75993  75857  137  0  2   75   72   147 0.788  11.41
 4.00 Prom -  91960  91921   40                              -2.66

 5.00 Prom +  92125  92164   40                              -5.76
 5.01 Init +  92888  92936   49  1  1   58  107    49 0.731   4.91
 5.02 Term +  95424  95497   74  1  2  108   45    41 0.646  -0.13
 5.03 PlyA +  96574  96579    6                               1.05

 6.04 PlyA -  99149  99144    6                               1.05
 6.03 Term - 100129  99998  132  1  0   82   37   120 0.965   4.39
 6.02 Intr - 102504 102345  160  2  1   57   92   174 0.997  14.69
 6.01 Init - 103700 103558  143  2  2   67   51   186 0.918  10.41
 6.00 Prom - 116594 116555   40                              -5.26

 7.00 Prom + 125441 125480   40                              -3.26
 7.01 Init + 135497 135555   59  1  2   59   61    91 0.574   2.28
 7.02 Intr + 135557 136260  704  2  2  -40  117   572 0.245  38.41
 7.03 Intr + 144898 145061  164  2  2  112  123    71 0.998  12.69
 7.04 Intr + 151374 151542  169  2  1   67   65   302 0.804  25.32
 7.05 Intr + 153030 153087   58  1  1  117   94    -2 0.310   1.24
 7.06 Intr + 155620 155731  112  1  1   87   61    14 0.105  -1.02
 7.07 Intr + 162465 162531   67  2  1   85   69    43 0.360   0.58
 7.08 Intr + 169379 169480  102  0  0  120   41    28 0.700   1.45
 7.09 Intr + 169508 169638  131  0  2  120  105   106 0.968  15.91
 7.10 Intr + 173327 173442  116  1  2  105   61   119 0.085  10.15
 7.11 Intr + 187985 188063   79  2  1   90   40   123 0.889   7.25
 7.12 Intr + 188892 189049  158  2  2   72  108   147 0.961  13.91
 7.13 Intr + 189671 189734   64  2  1   62  103   138 0.511  11.42
 7.14 Intr + 198638 198802  165  1  0   82   96    26 0.546   2.96
 7.15 Intr + 200457 200594  138  2  0   78   80   197 0.966  18.56
 7.16 Intr + 201176 201259   84  1  0  101  116    70 0.997  11.12

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 110703 110962  260  1  2   88   44   160 0.817   7.31
S.002 Term + 173327 173446  120  1  0  105   42   115 0.910   7.07
S.003 Term - 176368 176132  237  1  0  111   44   153 0.870   9.37


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:46805466_47009171|GENSCAN_predicted_peptide_1|139_aa
ELSLEPMVPASFPSGHSVLSPGLCLSAGTLNTCSGAVSGSPTSYFLRYLQAFMWVLLLDP
AYLEKGFGKGCFTRGLSWSWKQCEFILARQRGPDSPSLDASVGRGLENVAQAAVSSRYSP
QHVHGRVTAITCSSEKEMR

>gi568815596r:46805466_47009171|GENSCAN_predicted_CDS_1|420_bp
gagctgtcgctggagcccatggtccctgccagctttcctagtggtcactcagtcctgtca
ccaggcctctgcctttctgctggcactctcaacacctgctcaggtgctgtctcaggctcc
cctacctcctacttcctgcgctacctccaggccttcatgtgggtgcttctcctggaccca
gcgtacctggagaaggggtttggcaaaggctgcttcactcgaggcctctcatggagctgg
aaacaatgcgagtttattttggcacggcaaagagggcccgattccccttctctggacgcc
tctgtgggaagaggactagagaatgtggcccaggccgctgtcagttcccgttactctccc
cagcacgtccacggccgagtcacagccatcacatgtagctctgagaaggaaatgagataa

>gi568815596r:46805466_47009171|GENSCAN_predicted_peptide_2|465_aa
MLEEAACQRRVLETVKSKIMVLANSVSAQHLITSELEDQGLSEEDCRTPRYQLTGWLISW
VQYGQAYRLGMRTSEAPRSPQAAWTATPGQGILETERQGPEFINHLQTCRSGLGAQIPFG
ASWARALTRRTLEKEGRPRGEAQGWPDPSPEPQSDAVDLLSSSLQSSWVCETIEESQQRQ
INKIDRPLTRLIKKKREKNQIDAIKNDKGDITTDPTEILTTIREYYKHFYANKLENLEEM
DKFFNTYTLPRLNKEEVESLNRPIIGSEIEAIINSLPTKKSPGPDGFTAEFYQRYKEELN
KIPRNPTYKGSEGPLQGDYKPLLSEIKGDTNKRKNIPCSWIGRINIVKMAILPKVIYRFN
AIPIRLPMPFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPVFKLYYKATVTKT
AWYWYQNRDIEQWNRTEPSEIIPHIYNYLIFETLNVLKKECLRIQ

>gi568815596r:46805466_47009171|GENSCAN_predicted_CDS_2|1398_bp
atgctggaggaggcagcatgtcagcgcagggttctggagactgtgaagtccaagatcatg
gtgctggccaattcagtttctgcccaacacctcatcacctccgagttagaggaccagggc
ttgagcgaggaggactgtaggaccccgaggtaccagctgacagggtggctgatctcatgg
gtccagtatggccaggcctacaggctggggatgaggacctctgaagcccctcgtagcccc
caggctgcctggacggcaaccccaggccaggggatcctggaaacagaacggcagggccct
gagttcatcaaccacctgcaaacctgccggtctgggttgggtgcccaaatcccgtttggg
gccagctgggccagggccctcacacggagaacactcgagaaggaagggcggcccagagga
gaggcccaagggtggccggacccgagccctgaaccacagtctgatgccgtggacctgctt
tcaagcagcttacagtctagttgggtctgtgagaccattgaagaatcccagcagaggcag
atcaacaaaattgatagaccgctaacaagattaataaagaagaaaagagagaagaatcaa
atagacgcaataaaaaatgataaaggagatatcaccaccgatcccacagaaatactaact
accatcagagaatactataaacacttctacgcaaataaactagaaaatctagaagaaatg
gataaattcttcaacacatacaccctcccaagactaaacaaggaagaagttgaatccctg
aatagaccaataataggctctgaaattgaggcaataattaatagcttaccaaccaaaaaa
agtccaggaccagacggattcacagctgaattctaccagaggtacaaggaggagctgaat
aaaatacctaggaatccaacttacaagggatctgaaggacctcttcaaggagactataaa
ccactgctcagtgaaataaaaggggatacaaacaaacggaagaacattccatgctcatgg
ataggaagaatcaatatcgtgaaaatggccatactgcccaaggtaatttatagattcaat
gctatccccatcaggctaccaatgcctttcttcacagaattggagaaaactactttaaag
ttcatatggaaccaaaaaagagcccgcattgccaagtcaatcctaagtcaaaagaacaaa
gctggaggcatcacgctacctgtcttcaaactatactacaaggctacagtaaccaaaaca
gcatggtactggtaccaaaacagagatatagagcaatggaacagaacagagccctcagaa
ataataccacacatctacaactatctgatctttgaaactctcaatgtgctcaaaaaggag
tgtttgaggatccagtag

>gi568815596r:46805466_47009171|GENSCAN_predicted_peptide_3|196_aa
MHLLWNANPPGKKTLVSAHTSGGSTGDWVEVQRTGPGPQGEGLQMAAAGLKPEAGWEKAE
ARIKSVSVGEEEVARDMSFSHLLLPLLQAHSRSDSVNLSLFPGRPPGPRRPTHRGTCCFL
VLAFAHLRLRPSSLCASWTVSLQTPESSLKELAPRKTTHHQGSTGRPLVGKVGSLVLNHP
QGLDIKPSNLQALAFE

>gi568815596r:46805466_47009171|GENSCAN_predicted_CDS_3|591_bp
atgcatctcctgtggaatgcaaatccccctggcaagaaaaccctcgtgtcagcccatacc
tcggggggatctactggagactgggtggaggtgcagagaacaggtcctgggccccaaggg
gaggggctacagatggccgcagctgggctaaagcccgaggctggctgggagaaggcggaa
gcccgaataaaatcagtctctgttggtgaggaagaagtagcccgagacatgtctttctcg
caccttcttcttcccctgctgcaagcccactcccgttcagacagcgtgaacctgagtctt
tttcctggcaggccacctgggccacgaaggcccacacatcgaggcacctgctgcttctta
gtgctggcctttgctcacctaagactcaggccaagctccctgtgtgcctcctggacagtg
tccctgcagactcctgagtcctcactgaaggagctggccccacggaagactacccatcac
cagggcagtactgggcggccacttgtagggaaagtggggagtctagtccttaaccatcct
cagggccttgacatcaagccgtccaacctgcaggccctggcttttgaatga

>gi568815596r:46805466_47009171|GENSCAN_predicted_peptide_4|98_aa
MGQQGTSRDSIVHLRASGVGPGQVYCSNAVQTPTDPEKNGQLLTNEAHGVQQIPGTDSID
LRNSEKGDSIMARFREIFLEEVKSEVNFEGQCSFRPIR

>gi568815596r:46805466_47009171|GENSCAN_predicted_CDS_4|297_bp
atggggcagcagggcacctcccgagacagcatcgtgcacctacgagcatctggagttggt
ccaggccaggtctactgctccaatgcagtacagacacctactgacccagaaaaaaacggc
caattgctgacaaacgaagcacatggcgtgcagcagattcctggtacagactctattgac
ctcaggaattccgagaagggagacagcatcatggctagattcagggaaatcttcctggag
gaggtgaagtctgaggttaactttgaaggacagtgcagctttagacctattagataa

>gi568815596r:46805466_47009171|GENSCAN_predicted_peptide_5|40_aa
MVLDGIVSENQSLFLGGNCYYSYILDEKLKYRNFNAKKQA

>gi568815596r:46805466_47009171|GENSCAN_predicted_CDS_5|123_bp
atggttttagatgggatcgtgtctgaaaaccagtctttgttcctgggaggtaactgttat
tatagttatattttagatgagaaactgaagtatagaaacttcaatgctaagaaacaggcc
tag

>gi568815596r:46805466_47009171|GENSCAN_predicted_peptide_6|144_aa
MRSLLRTPFLCGLLWAFCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINK
PEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIID
GVLRDDDKNNDGYIDYAEFAKSLQ

>gi568815596r:46805466_47009171|GENSCAN_predicted_CDS_6|435_bp
atgagatccctgctcagaacccccttcctgtgtggcctgctctgggccttttgtgcccca
ggcgccagggctgaggagcctgcagccagcttctcccaacccggcagcatgggcctggat
aagaacacagtgcacgaccaagagcatatcatggagcatctagaaggtgtcatcaacaaa
ccagaggcggagatgtcgccacaagaattgcagctccattacttcaaaatgcatgattat
gatggcaataatttgcttgatggcttagaactctccacagccatcactcatgtccataag
gaggaagggagtgaacaggcaccactaatgagtgaagatgaactgattaacataatagat
ggtgttttgagagatgatgacaagaacaatgatggatacattgactatgctgaatttgca
aaatcactgcagtag

>gi568815596r:46805466_47009171|GENSCAN_predicted_peptide_7|790_aa
MGRGREARRPRAPGLRAGLNELRLRGGGGGGGRVPGRPRAPFARLAAVAALAASEPGSPR
PPHAPAGVEPRPGAGPQLAAPGPGAEAVAAAAAAAAAAAPGAATAEAEVAPVRVRAARPE
PQPGGAGRCAGSCWCCCCCCCPPSAARAPAAARAPAAVCAPVDPARECAPARTPPPAGSP
LLGRTFHDSAREKMAAKGAHGSYLKVESELERCRAEGHWDRMPELVRQLQTLSMPGGGGN
RRGSPSAAFTFPDTDDFGKLLLAEALLEQCLKENHAKIKDSMPLLEKNEPKMSEAKNYLS
SILNHGRLSPQYMCEAMLILGKLHYVEGSYRDAISMYARAGIDDMSMENKPLYQMRLLSE
AFVIKACLRLLGGTQSRWSEVLQGRPCHGPFVTSASLRTPDQTCQIRGRPWKGNVPSRFQ
VQGTQVWDSSSVGAAAVLVPFDRLDLRLLLAAPECLPPRMSPPSAHGEGLESGGPSRTGL
SLERLPNSIASRFRLTEREEEVITCFERASWIAQVFLQELEKTTNNSTSRHLKGCHPLDY
ELTYFLEAALQSAYVKNLKKGNIVKGMRELREVLRTVETKATQNFKVMAAKHLAGVLLHS
LSEECYWSPLSHPLPEFMGKEESSFATQALRKPHLYEGDNLYCPKDNIEEALLLLLISES
MADSRAQPCRDFRASRHPLLGHLSPWGHGQHSPTVATGQPSEPLATSLSVTELSPRATRD
VVLSRVPEQEEDRTVSLQNAAAIYDLLSITLGRRGQYVMLSECLERAMKFAFGEFHLWYQ
VALSMVACGK

>gi568815596r:46805466_47009171|GENSCAN_predicted_CDS_7|2370_bp
atggggagggggcgggaagcgaggcgcccccgggcgccggggctccgcgcgggattaaat
gagctccgactccgcggcgggggcggcggcggggggcgggtacccgggcggccgcgagcg
cccttcgcgcgcctggctgctgtggccgcgctggcagccagcgagcccggctcgccgagg
cctccccacgcccccgcgggggtggagccgcggccaggggcgggtccgcagctggcggcg
ccggggcccggggcggaggctgtggcagcagctgcagcggcggcggcggcggcagcgcca
ggagctgctacagcagaggcggaggttgctcctgtacgcgtacgggccgctcggccggag
ccgcagcccggaggcgccgggcggtgcgctgggagctgctggtgctgctgctgctgctgc
tgcccaccctccgccgcccgggcccccgctgccgcccgggccccggctgccgtctgcgcc
cccgtcgaccccgcccgcgagtgcgccccagccaggacgccgcccccggccgggtctcca
cttcttggccgcaccttccatgacagcgcccgcgagaagatggctgcgaagggcgcgcac
ggctcctacctgaaggtggagagcgagctggagcgctgccgcgccgagggccactgggac
cgcatgccggagctggtccggcagctgcagacgctgagcatgcccggcggcggaggtaac
aggcgaggcagcccgagcgcagcgttcacctttccggacaccgatgactttgggaaattg
ctgctggctgaggccctcctggagcagtgtttgaaggagaaccatgccaaaataaaagac
tccatgcctttgctggagaagaatgagccgaagatgagcgaagccaaaaattatctaagc
agtatccttaaccatgggaggctctcgccacagtacatgtgtgaggccatgctgatcctg
ggcaaactgcattacgtggagggctcataccgagatgccatcagcatgtacgcacgggcc
gggattgatgacatgtccatggagaacaagcccctgtatcagatgcggctgctgtcggag
gcttttgtcatcaaagcatgcctccggcttcttgggggaacacagtcccggtggtcagag
gtcctgcaggggaggccctgccatggcccctttgtaacttccgccagcctacggacccct
gaccaaacatgtcagatcaggggaagaccctggaaaggaaatgttcccagccgattccag
gtgcagggtacccaagtctgggattcatcttccgtgggtgctgcagctgtcctcgtgccc
tttgacaggctggacctccgcctcctcctggctgcaccagagtgtctgccccctcggatg
agcccaccttcggcccatggggagggcctggagtcagggggcccgagcaggacaggcctc
tctctggaacgcctacccaactccatcgcctcccgcttccgcctgacagagagggaggag
gaagtgatcacctgttttgagagggcctcctggatcgctcaggtgttcctgcaggaattg
gagaagaccacaaataacagcacgtcgaggcatctgaaaggctgtcacccgcttgactat
gagctcacctacttcctggaagctgccctccagagcgcctatgtgaaaaacctgaagaag
gggaacatcgtgaagggcatgagagagctccgggaggtgctgcggactgtggagaccaaa
gcaactcagaacttcaaagtgatggcggccaagcacctggcgggggtcctgctgcactcc
ctgagtgaggagtgctactggagccccctgtcccaccctctgcctgagttcatgggcaag
gaggagagttctttcgccactcaggccctgcggaaacctcacctctatgaaggagacaac
ctctactgccccaaggacaacatcgaggaagccctcctgctcctcctcatcagcgaatcc
atggctgactccagagctcagccttgccgggatttccgggcatcccggcaccctctcctg
ggccatctaagtccatgggggcatgggcagcactcaccaactgtggcaacagggcagcca
tcagaacccctggccaccagtctctcagtgactgagctgtcccccagggcaactcgagat
gtggtgctgagccgggtgccggagcaggaggaggaccggacagtgagcttgcagaatgcc
gcagccatctatgacctcctgagcatcacgttgggcagaaggggacagtacgtcatgctc
tcggagtgcctggagcgagccatgaagtttgcgtttggagaatttcacctttggtaccag
gtggccctctccatggtggcttgtgggaag