FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0405, 298 aa
  1>>>pF1KE0405 298 - 298 aa - 298 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3985+/-0.000848; mu= 15.3112+/- 0.051
 mean_var=94.3635+/-19.290, 0's: 0 Z-trim(108.9): 109  B-trim: 378 in 1/50
 Lambda= 0.132030
 statistics sampled from 10417 (10553) to 10417 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.324), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS6695.1 OGN gene_id:4969|Hs108|chr9             ( 298) 1946 380.8 6.8e-106
CCDS31870.1 EPYC gene_id:1833|Hs108|chr12          ( 322)  764 155.7 4.3e-38
CCDS1439.1 OPTC gene_id:26254|Hs108|chr1           ( 332)  711 145.6 4.8e-35


>>CCDS6695.1 OGN gene_id:4969|Hs108|chr9                  (298 aa)
 initn: 1946 init1: 1946 opt: 1946  Z-score: 2014.6  bits: 380.8 E(32554): 6.8e-106
Smith-Waterman score: 1946; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KE0 MKTLQSTLLLLLLVPLIKPAPPTQQDSRIIYDYGTDNFEESIFSQDYEDKYLDGKNIKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MKTLQSTLLLLLLVPLIKPAPPTQQDSRIIYDYGTDNFEESIFSQDYEDKYLDGKNIKEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ETVIIPNEKSLQLQKDEAITPLPPKKENDEMPTCLLCVCLSGSVYCEEVDIDAVPPLPKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ETVIIPNEKSLQLQKDEAITPLPPKKENDEMPTCLLCVCLSGSVYCEEVDIDAVPPLPKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SAYLYARFNKIKKLTAKDFADIPNLRRLDFTGNLIEDIEDGTFSKLSLLEELSLAENQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SAYLYARFNKIKKLTAKDFADIPNLRRLDFTGNLIEDIEDGTFSKLSLLEELSLAENQLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KLPVLPPKLTLFNAKYNKIKSRGIKANAFKKLNNLTFLYLDHNALESVPLNLPESLRVIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KLPVLPPKLTLFNAKYNKIKSRGIKANAFKKLNNLTFLYLDHNALESVPLNLPESLRVIH
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KE0 LQFNNIASITDDTFCKANDTSYIRDRIEEIRLEGNPIVLGKHPNSFICLKRLPIGSYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LQFNNIASITDDTFCKANDTSYIRDRIEEIRLEGNPIVLGKHPNSFICLKRLPIGSYF
              250       260       270       280       290        

>>CCDS31870.1 EPYC gene_id:1833|Hs108|chr12               (322 aa)
 initn: 783 init1: 760 opt: 764  Z-score: 797.4  bits: 155.7 E(32554): 4.3e-38
Smith-Waterman score: 770; 39.7% identity (68.3% similar) in 325 aa overlap (1-296:1-320)

               10        20        30        40            50      
pF1KE0 MKTLQSTLLLLLLVPLIKPAPPTQQDSRIIYDYGTDNFEESIFSQD----YEDKYLDGKN
       :::: . .: :..      ::  ..   : ::  ..... .. . :    ::.  .:  .
CCDS31 MKTLAGLVLGLVIFDAAVTAPTLES---INYD--SETYDATLEDLDNLYNYENIPVDKVE
               10        20             30        40        50     

                 60          70        80                       90 
pF1KE0 IK--------EKETVIIPN--EKSLQLQKDEAITPL------PPKKE---------NDEM
       :.        ..: .  :   ::. . ...:  ::       : . :         :...
CCDS31 IEIATVMPSGNRELLTPPPQPEKAQEEEEEEESTPRLIDGSSPQEPEFTGVLGPHTNEDF
          60        70        80        90       100       110     

             100       110       120       130       140       150 
pF1KE0 PTCLLCVCLSGSVYCEEVDIDAVPPLPKESAYLYARFNKIKKLTAKDFADIPNLRRLDFT
       ::::::.:.: .:::.. ..::.:::::..::.:.:::.:::.. .:::.. .:.:.:.:
CCDS31 PTCLLCTCISTTVYCDDHELDAIPPLPKNTAYFYSRFNRIKKINKNDFASLSDLKRIDLT
         120       130       140       150       160       170     

             160       170       180       190       200       210 
pF1KE0 GNLIEDIEDGTFSKLSLLEELSLAENQLLKLPVLPPKLTLFNAKYNKIKSRGIKANAFKK
       .::: .:.. .: ::  :.:: : .:.. .:: ::  ::... . :..  .::: .::: 
CCDS31 SNLISEIDEDAFRKLPQLRELVLRDNKIRQLPELPTTLTFIDISNNRLGRKGIKQEAFKD
         180       190       200       210       220       230     

             220       230       240       250       260       270 
pF1KE0 LNNLTFLYLDHNALESVPLNLPESLRVIHLQFNNIASITDDTFCKANDTSYIRDRIEEIR
       . .:  :::  : :. .:: :::.::..::: :::  . .::::.... .:::  .:.::
CCDS31 MYDLHHLYLTDNNLDHIPLPLPENLRALHLQNNNILEMHEDTFCNVKNLTYIRKALEDIR
         240       250       260       270       280       290     

             280       290        
pF1KE0 LEGNPIVLGKHPNSFICLKRLPIGSYF
       :.:::: :.: :....:: :::.::  
CCDS31 LDGNPINLSKTPQAYMCLPRLPVGSLV
         300       310       320  

>>CCDS1439.1 OPTC gene_id:26254|Hs108|chr1                (332 aa)
 initn: 753 init1: 704 opt: 711  Z-score: 742.7  bits: 145.6 E(32554): 4.8e-35
Smith-Waterman score: 711; 45.8% identity (77.4% similar) in 212 aa overlap (86-297:120-331)

          60        70        80        90       100       110     
pF1KE0 NIKEKETVIIPNEKSLQLQKDEAITPLPPKKENDEMPTCLLCVCLSGSVYCEEVDIDAVP
                                     . :  .::::.::::..::::...:.. .:
CCDS14 SPAKSTTAPGTPSSNPTMTRPTTAGLLLSSQPNHGLPTCLVCVCLGSSVYCDDIDLEDIP
      90       100       110       120       130       140         

         120       130       140       150       160       170     
pF1KE0 PLPKESAYLYARFNKIKKLTAKDFADIPNLRRLDFTGNLIEDIEDGTFSKLSLLEELSLA
       :::...::::::::.:... :.::  . .:.:.:...::: .:.. .:  :  :..: : 
CCDS14 PLPRRTAYLYARFNRISRIRAEDFKGLTKLKRIDLSNNLISSIDNDAFRLLHALQDLILP
     150       160       170       180       190       200         

         180       190       200       210       220       230     
pF1KE0 ENQLLKLPVLPPKLTLFNAKYNKIKSRGIKANAFKKLNNLTFLYLDHNALESVPLNLPES
       ::::  :::::  . ..... :...: ::.  ::. ...: ::::. : :.:.:  :: :
CCDS14 ENQLEALPVLPSGIEFLDVRLNRLQSSGIQPAAFRAMEKLQFLYLSDNLLDSIPGPLPLS
     210       220       230       240       250       260         

         240       250       260       270       280       290     
pF1KE0 LRVIHLQFNNIASITDDTFCKANDTSYIRDRIEEIRLEGNPIVLGKHPNSFICLKRLPIG
       :: .::: : : ..  :.::  .. .. : ..:.:::.:::: :.  :....:: :::::
CCDS14 LRSVHLQNNLIETMQRDVFCDPEEHKHTRRQLEDIRLDGNPINLSLFPSAYFCLPRLPIG
     270       280       290       300       310       320         

          
pF1KE0 SYF
        . 
CCDS14 RFT
     330  




298 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 12:11:19 2016 done: Thu Nov  3 12:11:19 2016
 Total Scan time:  2.660 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]