Result of FASTA (omim) for pF1KB9957
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9957, 538 aa
  1>>>pF1KB9957 538 - 538 aa - 538 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3287+/-0.000454; mu= 18.5388+/- 0.028
 mean_var=74.1642+/-15.054, 0's: 0 Z-trim(109.2): 27  B-trim: 0 in 0/54
 Lambda= 0.148928
 statistics sampled from 17315 (17335) to 17315 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.555), E-opt: 0.2 (0.203), width:  16
 Scan time:  7.050

The best scores are:                                      opt bits E(85289)
XP_006711560 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 538) 3541 770.9       0
XP_016857671 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 538) 3541 770.9       0
NP_001166995 (OMIM: 600063) 60 kDa SS-A/Ro ribonuc ( 538) 3541 770.9       0
NP_004591 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleo ( 538) 3541 770.9       0
XP_016857670 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 538) 3541 770.9       0
NP_001035829 (OMIM: 600063) 60 kDa SS-A/Ro ribonuc ( 534) 3479 757.6 2.2e-218
NP_001035828 (OMIM: 600063) 60 kDa SS-A/Ro ribonuc ( 525) 3379 736.1 6.3e-212
NP_001166996 (OMIM: 600063) 60 kDa SS-A/Ro ribonuc ( 518) 3376 735.4 9.7e-212
XP_016857669 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 560) 2241 491.6 2.6e-138
XP_006711558 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 560) 2241 491.6 2.6e-138
XP_006711559 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 560) 2241 491.6 2.6e-138
XP_011508224 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 263) 1731 381.8 1.4e-105
NP_001317949 (OMIM: 600063) 60 kDa SS-A/Ro ribonuc ( 263) 1731 381.8 1.4e-105
XP_016857672 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 263) 1731 381.8 1.4e-105


>>XP_006711560 (OMIM: 600063) PREDICTED: 60 kDa SS-A/Ro   (538 aa)
 initn: 3541 init1: 3541 opt: 3541  Z-score: 4113.8  bits: 770.9 E(85289):    0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
              490       500       510       520       530        

>>XP_016857671 (OMIM: 600063) PREDICTED: 60 kDa SS-A/Ro   (538 aa)
 initn: 3541 init1: 3541 opt: 3541  Z-score: 4113.8  bits: 770.9 E(85289):    0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
              490       500       510       520       530        

>>NP_001166995 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleop  (538 aa)
 initn: 3541 init1: 3541 opt: 3541  Z-score: 4113.8  bits: 770.9 E(85289):    0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
              490       500       510       520       530        

>>NP_004591 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleoprot  (538 aa)
 initn: 3541 init1: 3541 opt: 3541  Z-score: 4113.8  bits: 770.9 E(85289):    0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
              490       500       510       520       530        

>>XP_016857670 (OMIM: 600063) PREDICTED: 60 kDa SS-A/Ro   (538 aa)
 initn: 3541 init1: 3541 opt: 3541  Z-score: 4113.8  bits: 770.9 E(85289):    0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
              490       500       510       520       530        

>>NP_001035829 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleop  (534 aa)
 initn: 3479 init1: 3479 opt: 3479  Z-score: 4041.8  bits: 757.6 E(85289): 2.2e-218
Smith-Waterman score: 3479; 100.0% identity (100.0% similar) in 528 aa overlap (1-528:1-528)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::::::::::::::::          
NP_001 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDPCKIPY    
              490       500       510       520       530        

>>NP_001035828 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleop  (525 aa)
 initn: 3379 init1: 3379 opt: 3379  Z-score: 3925.8  bits: 736.1 E(85289): 6.3e-212
Smith-Waterman score: 3379; 99.6% identity (100.0% similar) in 516 aa overlap (1-516:1-516)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::..                      
NP_001 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRALQNTLLNKSF             
              490       500       510       520                  

>>NP_001166996 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleop  (518 aa)
 initn: 3376 init1: 3376 opt: 3376  Z-score: 3922.4  bits: 735.4 E(85289): 9.7e-212
Smith-Waterman score: 3376; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::                        
NP_001 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRDTVK                    
              490       500       510                            

>>XP_016857669 (OMIM: 600063) PREDICTED: 60 kDa SS-A/Ro   (560 aa)
 initn: 3519 init1: 2234 opt: 2241  Z-score: 2604.0  bits: 491.6 E(85289): 2.6e-138
Smith-Waterman score: 3477; 96.1% identity (96.1% similar) in 560 aa overlap (1-538:1-560)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190                             200       210        
pF1KB9 DLLRLSHLKPSSE----------G------------LAIVTKYITKGWKEVHELYKEKAL
       :::::::::::::          :            ::::::::::::::::::::::::
XP_016 DLLRLSHLKPSSEVKLEKTATQKGGFTFQFCGLKPRLAIVTKYITKGWKEVHELYKEKAL
              190       200       210       220       230       240

      220       230       240       250       260       270        
pF1KB9 SVETEKLLKYLEAVEKVKRTRDELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVETEKLLKYLEAVEKVKRTRDELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPL
              250       260       270       280       290       300

      280       290       300       310       320       330        
pF1KB9 TALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR
              310       320       330       340       350       360

      340       350       360       370       380       390        
pF1KB9 GKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAA
              370       380       390       400       410       420

      400       410       420       430       440       450        
pF1KB9 MCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTN
              430       440       450       460       470       480

      460       470       480       490       500       510        
pF1KB9 TPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLD
              490       500       510       520       530       540

      520       530        
pF1KB9 MCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::
XP_016 MCGFDTGALDVIRNFTLDMI
              550       560

>>XP_006711558 (OMIM: 600063) PREDICTED: 60 kDa SS-A/Ro   (560 aa)
 initn: 3519 init1: 2234 opt: 2241  Z-score: 2604.0  bits: 491.6 E(85289): 2.6e-138
Smith-Waterman score: 3477; 96.1% identity (96.1% similar) in 560 aa overlap (1-538:1-560)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190                             200       210        
pF1KB9 DLLRLSHLKPSSE----------G------------LAIVTKYITKGWKEVHELYKEKAL
       :::::::::::::          :            ::::::::::::::::::::::::
XP_006 DLLRLSHLKPSSEVKLEKTATQKGGFTFQFCGLKPRLAIVTKYITKGWKEVHELYKEKAL
              190       200       210       220       230       240

      220       230       240       250       260       270        
pF1KB9 SVETEKLLKYLEAVEKVKRTRDELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SVETEKLLKYLEAVEKVKRTRDELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPL
              250       260       270       280       290       300

      280       290       300       310       320       330        
pF1KB9 TALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR
              310       320       330       340       350       360

      340       350       360       370       380       390        
pF1KB9 GKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAA
              370       380       390       400       410       420

      400       410       420       430       440       450        
pF1KB9 MCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTN
              430       440       450       460       470       480

      460       470       480       490       500       510        
pF1KB9 TPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLD
              490       500       510       520       530       540

      520       530        
pF1KB9 MCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::
XP_006 MCGFDTGALDVIRNFTLDMI
              550       560




538 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:17:47 2016 done: Sat Nov  5 08:17:48 2016
 Total Scan time:  7.050 Total Display time:  0.130

Function used was FASTA [36.3.4 Apr, 2011]
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