GENSCAN 1.0 Date run: 6-Nov-116 Time: 23:47:03 Sequence gi568815594r:163225306_163426554 : 201249 bp : 37.44% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init + 3149 3154 6 1 0 96 93 0 0.498 2.21 1.02 Intr + 5163 5196 34 2 1 111 97 48 0.415 4.88 1.03 Term + 11262 11359 98 1 2 85 32 71 0.229 -1.65 1.04 PlyA + 11862 11867 6 1.05 2.00 Prom + 24077 24116 40 -0.75 2.01 Init + 28187 28426 240 1 0 47 81 152 0.337 8.35 2.02 Intr + 31988 32130 143 1 2 47 89 98 0.290 4.03 2.03 Term + 32683 32701 19 1 1 97 38 14 0.139 -5.89 2.04 PlyA + 32955 32960 6 1.05 3.03 PlyA - 33397 33392 6 1.05 3.02 Term - 40393 40285 109 0 1 115 44 119 0.998 7.20 3.01 Init - 40641 40466 176 0 2 79 110 94 0.880 9.57 3.00 Prom - 47156 47117 40 -7.55 4.04 PlyA - 47188 47183 6 1.05 4.03 Term - 49230 49138 93 0 0 81 44 129 0.342 4.65 4.02 Intr - 54301 54273 29 2 2 120 89 12 0.281 1.42 4.01 Init - 60106 59929 178 1 1 37 36 157 0.168 4.87 4.00 Prom - 65040 65001 40 -2.75 5.03 PlyA - 65068 65063 6 1.05 5.02 Term - 74231 74013 219 2 0 -9 48 186 0.254 0.96 5.01 Init - 91728 91387 342 0 0 68 39 151 0.075 5.48 5.00 Prom - 96776 96737 40 -6.25 6.03 PlyA - 97798 97793 6 1.05 6.02 Term - 100453 99998 456 1 0 78 47 286 0.999 17.64 6.01 Init - 101249 100551 699 2 0 65 116 451 0.990 40.63 6.00 Prom - 104611 104572 40 -11.34 7.05 PlyA - 105074 105069 6 1.05 7.04 Term - 107203 106731 473 2 2 63 52 332 0.819 21.21 7.03 Intr - 119062 118813 250 1 1 96 49 184 0.070 11.39 7.02 Intr - 119565 119469 97 2 1 52 93 35 0.572 -0.51 7.01 Init - 125313 125255 59 0 2 38 105 55 0.732 3.03 7.00 Prom - 140880 140841 40 -4.25 8.00 Prom + 141006 141045 40 -6.95 8.01 Init + 144554 144846 293 1 2 66 37 165 0.435 5.87 8.02 Intr + 148196 148362 167 2 2 90 58 72 0.013 3.08 8.03 Term + 179455 179723 269 2 2 56 44 218 0.451 8.87 8.04 PlyA + 180618 180623 6 1.05 9.00 Prom + 186311 186350 40 -5.55 9.01 Init + 189296 189385 90 1 0 99 76 93 0.189 9.74 9.02 Term + 199452 199565 114 2 0 106 47 45 0.021 -0.21 9.03 PlyA + 199697 199702 6 1.05 10.02 PlyA - 199889 199884 6 1.05 10.01 Term - 200958 200683 276 0 0 38 48 166 0.200 2.08 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815594r:163225306_163426554|GENSCAN_predicted_peptide_1|45_aa MTVFRELVVFGYVSIFSATPHSWYQFTVLVRFHAADKDIPEGKEV >gi568815594r:163225306_163426554|GENSCAN_predicted_CDS_1|138_bp atgactgtttttagggaactggtggtgtttggttacgtaagtatattttcagcaacacct cactcctggtaccaatttactgtattagtccgttttcatgctgctgataaagacatacct gaaggaaaagaggtttaa >gi568815594r:163225306_163426554|GENSCAN_predicted_peptide_2|133_aa MGSSRNWLRASLQLNLMLCKQLPLWAPMSGQGECGGTWKLGDTRNCKAPKRMSKPWLGKP LGLGSWKSHSSPLLLVTCNMEPGFFSGIQEESGHMNRLKGSVCEGFYWVTDVALSRMGSW KGVGVRNSYQTVS >gi568815594r:163225306_163426554|GENSCAN_predicted_CDS_2|402_bp atgggcagctccaggaactggcttcgtgcaagcctgcagctgaatctaatgctctgcaag cagcttccactgtgggcacccatgtctggacaaggggaatgtggaggcacctggaagctt ggagacaccagaaactgcaaagcccccaaaaggatgtcaaaaccctggcttgggaagccc ctaggtctgggctcctggaagagccatagctctcctctccttctagtcacctgcaatatg gaacctgggttcttctctggcatccaagaagaatcaggtcacatgaacagattgaagggt agtgtatgtgaaggattttattgggtaacggatgtggctctcagccgaatggggagttgg aaaggggttggtgtgagaaacagctaccaaacggtatcttaa >gi568815594r:163225306_163426554|GENSCAN_predicted_peptide_3|94_aa MKKQPRGYKVCCHRGINTICQLAGIKDMYAKVSGSISMLPLTWGLFHGLSVRNPSTAGRG TLKKEPGDEVPHIKLDLEEVNALQGMWRSVRSGF >gi568815594r:163225306_163426554|GENSCAN_predicted_CDS_3|285_bp atgaagaaacaacccagaggttacaaggtctgctgccacaggggcatcaacaccatatgc cagctcgctggcatcaaagacatgtatgccaaggtctctgggtccatcagtatgctcccc ctcacctggggcctcttccatgggctctcagtcagaaacccgtcaacagctggcaggggg accttgaaaaaggagccaggtgatgaggttccacatatcaaactggacttggaagaagtg aatgctctacagggaatgtggcgctctgtgcggtcgggtttctag >gi568815594r:163225306_163426554|GENSCAN_predicted_peptide_4|99_aa MGDITTVTTEIQKITRGYYEHLYAHKLENLEEMCKFLERYNPPRLNQEEIETLNRPITSS FCPYPLLHMCQIKETRARSDEDDGISPRNSDFVLYGETG >gi568815594r:163225306_163426554|GENSCAN_predicted_CDS_4|300_bp atgggagatattacaactgttactacagaaatacaaaagatcactcgaggctactatgaa cacctgtatgcacataaactagaaaacctagaggagatgtgtaaattcctggaaagatac aaccctcctagattaaaccaggaagaaatagaaactctgaacagaccaataacaagcagt ttctgcccatatcctctcctgcatatgtgccagataaaagaaaccagagctagatctgat gaagacgatggaatatcacccagaaattctgactttgtgctgtatggagaaacaggatga >gi568815594r:163225306_163426554|GENSCAN_predicted_peptide_5|186_aa MDGNAWMSKQKPAAGAEPSWRTSISAVQRGNVGLEPLHRVPTGALPSGPVRKRPLFSRSQ NGRSPSSLHPVPGKTADTQHQSLRAATGTGSCKDTGAELPKALGAPSLHQYALDRGEEAA EEKSKASRCWFMKFKEGRHLHYIKVQGAVASTDVEAAASDPEDLAKTIDKHGNTKNHFQW RQIAFY >gi568815594r:163225306_163426554|GENSCAN_predicted_CDS_5|561_bp atggatggaaatgcctggatgtccaagcagaagcctgctgcaggggcagagccctcatgg agaacctctattagtgcagtccagaggggaaatgtggggttggagcccctacacagagtc cccactggggcactgcctagtggacctgtgagaaagaggccactattctccagatcccag aatggtagatcccccagcagcttgcaccctgtgcctggaaaaactgcagacactcaacat cagtctttgagagcagccactgggactggatcctgcaaagacacaggggcagagctgccc aaggccttgggagccccctctttgcatcaatatgccctagatagaggcgaggaagctgct gaagaaaagtcgaaagctagcagatgttggttcatgaagtttaaggaagggaggcatctc cattacataaaagtgcaaggtgcagtagcaagtacagatgtagaagctgcagcaagtgat ccagaagatctagctaagacaattgataaacatggcaacactaaaaatcattttcagtgg agacaaatagccttctattga >gi568815594r:163225306_163426554|GENSCAN_predicted_peptide_6|384_aa MNSTLFSQVENHSVHSNFSEKNAQLLAFENDDCHLPLAMIFTLALAYGAVIILGVSGNLA LIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWVFGEAMCKLNPFVQ CVSITVSIFSLVLIAVERHQLIINPRGWRPNNRHAYVGIAVIWVLAVASSLPFLIYQVMT DEPFQNVTLDAYKDKYVCFDQFPSDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKR RNNMMDKMRDNKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQIIATCNHNL LFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQFFFNFCDFRSRDDDYETIAMSTMHTDVS KTSLKQASPVAFKKINNNDDNEKI >gi568815594r:163225306_163426554|GENSCAN_predicted_CDS_6|1155_bp atgaattcaacattattttcccaggttgaaaatcattcagtccactctaatttctcagag aagaatgcccagcttctggcttttgaaaatgatgattgtcatctgcccttggccatgata tttaccttagctcttgcttatggagctgtgatcattcttggtgtctctggaaacctggcc ttgatcataatcatcttgaaacaaaaggagatgagaaatgttaccaacatcctgattgtg aacctttccttctcagacttgcttgttgccatcatgtgtctcccctttacatttgtctac acattaatggaccactgggtctttggtgaggcgatgtgtaagttgaatccttttgtgcaa tgtgtttcaatcactgtgtccattttctctctggttctcattgctgtggaacgacatcag ctgataatcaaccctcgagggtggagaccaaataatagacatgcttatgtaggtattgct gtgatttgggtccttgctgtggcttcttctttgcctttcctgatctaccaagtaatgact gatgagccgttccaaaatgtaacacttgatgcgtacaaagacaaatacgtgtgctttgat caatttccatcggactctcataggttgtcttataccactctcctcttggtgctgcagtat tttggtccactttgttttatatttatttgctacttcaagatatatatacgcctaaaaagg agaaacaacatgatggacaagatgagagacaataagtacaggtccagtgaaaccaaaaga atcaatatcatgctgctctccattgtggtagcatttgcagtctgctggctccctcttacc atctttaacactgtgtttgattggaatcatcagatcattgctacctgcaaccacaatctg ttattcctgctctgccacctcacagcaatgatatccacttgtgtcaaccccatattttat gggttcctgaacaaaaacttccagagagacttgcagttcttcttcaacttttgtgatttc cggtctcgggatgatgattatgaaacaatagccatgtccacgatgcacacagatgtttcc aaaacttctttgaagcaagcaagcccagtcgcatttaaaaaaatcaacaacaatgatgat aatgaaaaaatctga >gi568815594r:163225306_163426554|GENSCAN_predicted_peptide_7|292_aa MAHDFAKHPLIQQDRRQCESRVSLPLRNLKSKIAFGLQNSAERALGYFPWSKEAPSRIPD TLLPGSARACSTRVSWEPEGPARHERIQPSTLSAVSSLLTSACSATLIPIFPAALPSPSP PRSLGTPDNALAPETGAKKTNSKEGKLRVYAFPETSAKSLIDKVKDERGRKTMRVSETGS GGPRWGLQCRQVAGCSKSPDRSRAPAEGYGDDAGERRGYPTRSSGFPTTCSRGISGWGSK FSFTPVLFKRPRHWEGARVRLSHTRSFSLRVLSWLEALALAAPEFSRSNWLG >gi568815594r:163225306_163426554|GENSCAN_predicted_CDS_7|879_bp atggcacatgactttgccaaacatccactgatccagcaagacagacgtcagtgtgaaagc agagtttctcttcccttgagaaatctgaaatctaaaattgcattcggactgcaaaattct gctgaaagagccttaggctattttccatggtctaaggaggctccttcgcggatccccgac actctcctcccgggttcggcccgcgcctgctccacccgggtgagttgggaaccggaggga cctgctcggcacgaaagaattcagcccagtaccctctccgctgtctcttcactcctgaca agtgcctgttccgccaccctaatccccatttttccagccgcgctcccttcaccttcccca ccccgctctcttgggacccccgacaacgccctggcaccagagacgggagcgaaaaagaca aattccaaagagggtaagttgcgagtttatgcctttccagagacttctgcgaaatctctc attgacaaggtgaaggatgagaggggaagaaaaacgatgcgagtgtccgaaactggctct gggggaccaaggtggggtctccagtgcaggcaggtcgcaggttgctccaaatcaccggac cgttcgcgggctcctgccgaagggtatggggacgacgcgggtgaaaggagagggtaccct acgcggagttcgggctttcccaccacctgctcccggggaatttctggatggggatccaag ttttcctttaccccggttctctttaaaaggccgaggcactgggaaggcgcccgagttcgc ctatcccacacccgctcattttccttacgtgtcttgagctggctggaggcgctggctctg gccgcaccggagttttcgcggagtaactggctgggatga >gi568815594r:163225306_163426554|GENSCAN_predicted_peptide_8|242_aa MKTLEENLGNTIQYIGLGKDFMTKTQKAMAIKAKIDKWDLIKIKSFSTAKETIIKVNRQP TEWEKNFAIYPSDKGLISRIYKELKQIYKKKSKNPIKKYIQPVNFSGKAIDFEPAQAWIS ISPESFKRCITLAQRTHSSEPQYLHLLNRDKSNGSSGATIDFCLSFPVCGILLQQQPYQK EYAFPTPQYCQHSVALVLFPAISNKLSLFLMIAHASYIGDASIQQEPAGFATLLKLSRRT FE >gi568815594r:163225306_163426554|GENSCAN_predicted_CDS_8|729_bp atgaaaaccctagaagaaaacctaggcaataccattcagtacataggcttgggcaaagac ttcatgactaaaacacaaaaagcaatggcaataaaagccaaaatagacaaatgggatctg attaaaataaagagcttcagcacagcgaaagaaactatcatcaaagtgaacaggcaacct acagaatgggagaaaaattttgcaatctatccatcagacaaagggctaatatccagaatc tacaaggaacttaaacaaatttacaagaaaaaatcaaaaaaccccatcaaaaagtacatt cagccagtgaattttagtggaaaggccatcgactttgaaccagcacaggcctggattagt atttcaccagagtcattcaaaagatgtataaccttagcccaacggactcattcttccgaa cctcagtatcttcacctattaaacagggataaaagcaatggaagttccggtgcaacaatc gatttctgtttaagcttcccagtttgtggtattttgctacagcagcagccctatcagaaa gaatacgccttccccactccacaatactgccagcattctgtggcattggtgctgtttcct gcaataagcaataaactcagccttttcttaatgatagctcatgctagttatattggagat gccagcattcagcaagagcctgctggatttgccactcttttaaagctgtcaagaagaact tttgaataa >gi568815594r:163225306_163426554|GENSCAN_predicted_peptide_9|67_aa MAEIGHRRAQAIPSEGPSPKPWQLPRGVEPKISPYKSHLCTLSVFISHHSNSKAENENLV PEGLEPL >gi568815594r:163225306_163426554|GENSCAN_predicted_CDS_9|204_bp atggctgaaattggccaccgcagagctcaggccattccttcagagggtccaagccccaag ccttggcagcttccacgtggtgttgagcctaaaatatcaccttacaagtctcatctatgt acactttctgtattcatctctcatcacagcaactcaaaagcagagaatgagaatctggtc cctgaaggactggagcccctctga >gi568815594r:163225306_163426554|GENSCAN_predicted_peptide_10|91_aa TIAPALANMSLPNKGMGLSGITRKACEKSKVSQLQLRRWEKYLVTGHPGIPQMVTDLEDS CPGQETNTEKATPVSRRKSISWPSMVKCTRG >gi568815594r:163225306_163426554|GENSCAN_predicted_CDS_10|276_bp acaatagctccagctttggctaatatgtcactccctaataagggtatgggactttcaggc ataacaagaaaggcatgtgaaaagagcaaagtctcccaattacaactgaggaggtgggag aaatacctggttacaggccatcccgggattcctcagatggtaacggaccttgaggacagc tgtccaggacaggagactaacactgagaaagccacgccagtgtccagaaggaagtcaatt tcctggccctcaatggttaaatgtacccggggctga