Result of FASTA (omim) for pF1KB5273
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5273, 132 aa
  1>>>pF1KB5273 132 - 132 aa - 132 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1410+/-0.000412; mu= 11.2735+/- 0.025
 mean_var=55.8810+/-11.042, 0's: 0 Z-trim(110.0): 29  B-trim: 0 in 0/52
 Lambda= 0.171570
 statistics sampled from 18232 (18260) to 18232 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.214), width:  16
 Scan time:  4.630

The best scores are:                                      opt bits E(85289)
NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132)  838 215.6 1.9e-56
NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132)  587 153.4 9.6e-38
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133)  559 146.5 1.2e-35
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126)  525 138.1 3.8e-33
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132)  512 134.9 3.7e-32
NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135)  499 131.7 3.5e-31
NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166)  488 129.0 2.8e-30
NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144)  432 115.1 3.7e-26
NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128)  407 108.9 2.4e-24
NP_001305970 (OMIM: 602965) fatty acid-binding pro (  97)  374 100.7 5.4e-22
NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137)  315 86.1 1.8e-17
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138)  309 84.6 5.2e-17
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138)  309 84.6 5.2e-17
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138)  309 84.6 5.2e-17
NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197)  305 83.7 1.4e-16
NP_443192 (OMIM: 608604) retinoid-binding protein  ( 134)  301 82.6   2e-16
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134)  268 74.5 5.7e-14
NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135)  265 73.7 9.6e-14
NP_001124465 (OMIM: 180260) retinol-binding protei ( 153)  245 68.8 3.3e-12
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132)  243 68.3 4.1e-12
NP_001124464 (OMIM: 180260) retinol-binding protei ( 157)  243 68.3 4.8e-12
XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126)  198 57.1 8.9e-09
NP_001316383 (OMIM: 611866) retinol-binding protei (  86)  150 45.2 2.4e-05
NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127)  133 41.1 0.00063


>>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie  (132 aa)
 initn: 838 init1: 838 opt: 838  Z-score: 1134.4  bits: 215.6 E(85289): 1.9e-56
Smith-Waterman score: 838; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)

               10        20        30        40        50        60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
               70        80        90       100       110       120

              130  
pF1KB5 KGVVCTRIYEKV
       ::::::::::::
NP_002 KGVVCTRIYEKV
              130  

>>NP_001433 (OMIM: 600434) fatty acid-binding protein, a  (132 aa)
 initn: 585 init1: 571 opt: 587  Z-score: 798.6  bits: 153.4 E(85289): 9.6e-38
Smith-Waterman score: 587; 67.2% identity (88.5% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
       : . :.:::::::::::::::: .:::.::::....:::..::: .::.:::..::::::
NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
       ::::: :::::.:.:::.::.:: .::. : : .::.:::: ::::::  . :.:.:: :
NP_001 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
               70        80        90       100       110       120

              130  
pF1KB5 KGVVCTRIYEKV
       :::. ::.::. 
NP_001 KGVTSTRVYERA
              130  

>>NP_004093 (OMIM: 134651) fatty acid-binding protein, h  (133 aa)
 initn: 559 init1: 559 opt: 559  Z-score: 761.1  bits: 146.5 E(85289): 1.2e-35
Smith-Waterman score: 559; 63.4% identity (88.5% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
       : . ::::::::.:.:::::::.::::.:::......:::.:: :.:::.:..:.:::::
NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
       :::::::: ::.:::::.::.::::::. :.: ..:.:::.:::. :.:..::..     
NP_004 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
               70        80        90       100       110       120

              130   
pF1KB5 KGVVCTRIYEKV 
         .:::: :::  
NP_004 GTAVCTRTYEKEA
              130   

>>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind  (126 aa)
 initn: 515 init1: 515 opt: 525  Z-score: 716.0  bits: 138.1 E(85289): 3.8e-33
Smith-Waterman score: 525; 63.6% identity (91.7% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
       : . ::::::::.:.:::::::.::::.:::......:::.:: :.:::.:..:.:::::
XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
       :::::::: ::.:::::.::.::::::. :.: ..:.:::.:::. :.:..::..   :.
XP_011 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILMEKL
               70        80        90       100       110       120

              130  
pF1KB5 KGVVCTRIYEKV
       .           
XP_011 QLRNVK      
                   

>>NP_001437 (OMIM: 602965) fatty acid-binding protein, b  (132 aa)
 initn: 512 init1: 512 opt: 512  Z-score: 698.3  bits: 134.9 E(85289): 3.7e-32
Smith-Waterman score: 512; 59.5% identity (85.5% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
       : . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
       :::::.::.::.:::::.:. ::.:.:.  .: ..:.::::::.. :.. .::::    .
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
               70        80        90       100       110       120

              130  
pF1KB5 KGVVCTRIYEKV
         :: .: ::: 
NP_001 GDVVAVRHYEKA
              130  

>>NP_001435 (OMIM: 605168) fatty acid-binding protein, e  (135 aa)
 initn: 499 init1: 499 opt: 499  Z-score: 680.7  bits: 131.7 E(85289): 3.5e-31
Smith-Waterman score: 499; 58.7% identity (84.1% similar) in 126 aa overlap (7-132:9-134)

                 10        20        30        40        50        
pF1KB5   MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTF
               : :.::.:..::.::: ::::.: ::.: .:::  ::.  :  .::.::::.
NP_001 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB5 KNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAEC
       :.:..:  ::..:::::::.:::... ..  :.: : :.:::::.:: ::: .::.:.::
NP_001 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
               70        80        90       100       110       120

      120       130   
pF1KB5 KMKGVVCTRIYEKV 
        :..:.:::::::: 
NP_001 VMNNVTCTRIYEKVE
              130     

>>NP_001305968 (OMIM: 602965) fatty acid-binding protein  (166 aa)
 initn: 488 init1: 488 opt: 488  Z-score: 664.6  bits: 129.0 E(85289): 2.8e-30
Smith-Waterman score: 488; 62.6% identity (90.4% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
       : . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
       :::::.::.::.:::::.:. ::.:.:.  .: ..:.::::::.. :.. .::::     
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND
               70        80        90       100       110       120

              130                                    
pF1KB5 KGVVCTRIYEKV                                  
                                                     
NP_001 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
              130       140       150       160      

>>NP_001307925 (OMIM: 134651) fatty acid-binding protein  (144 aa)
 initn: 432 init1: 432 opt: 432  Z-score: 590.7  bits: 115.1 E(85289): 3.7e-26
Smith-Waterman score: 527; 58.5% identity (81.7% similar) in 142 aa overlap (1-131:1-142)

               10        20                   30        40         
pF1KB5 MSNKFLGTWKLVSSENFDDYMKAL-----------GVGLATRKLGNLAKPTVIISKKGDI
       : . ::::::::.:.:::::::.:           :::.:::......:::.:: :.:::
NP_001 MVDAFLGTWKLVDSKNFDDYMKSLAHILITFPLPSGVGFATRQVASMTKPTTIIEKNGDI
               10        20        30        40        50        60

      50        60        70        80        90       100         
pF1KB5 ITIRTESTFKNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKL
       .:..:.::::::::::::: ::.:::::.::.::::::. :.: ..:.:::.:::. :.:
NP_001 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL
               70        80        90       100       110       120

     110       120       130   
pF1KB5 VNGKMVAECKMKGVVCTRIYEKV 
       ..::..       .:::: :::  
NP_001 IDGKLILTLTHGTAVCTRTYEKEA
              130       140    

>>NP_001305971 (OMIM: 602965) fatty acid-binding protein  (128 aa)
 initn: 407 init1: 407 opt: 407  Z-score: 558.0  bits: 108.9 E(85289): 2.4e-24
Smith-Waterman score: 407; 58.9% identity (85.0% similar) in 107 aa overlap (25-131:21-127)

               10        20        30        40        50        60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
                               :::.:::..::..:::::::..:: ..::: :::::
NP_001     MQLKEKDWRSALIKTANQQKGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
       :::::.::.::.:::::.:. ::.:.:.  .: ..:.::::::.. :.. .::::    .
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
         60        70        80        90       100       110      

              130  
pF1KB5 KGVVCTRIYEKV
         :: .: ::: 
NP_001 GDVVAVRHYEKA
        120        

>>NP_001305970 (OMIM: 602965) fatty acid-binding protein  (97 aa)
 initn: 382 init1: 364 opt: 374  Z-score: 515.8  bits: 100.7 E(85289): 5.4e-22
Smith-Waterman score: 374; 68.3% identity (92.7% similar) in 82 aa overlap (1-82:1-82)

               10        20        30        40        50        60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
       : . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
       :::::.::.::.:::::.:. :                                      
NP_001 TEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE                       
               70        80        90                              




132 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:23:01 2016 done: Sat Nov  5 12:23:02 2016
 Total Scan time:  4.630 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]
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