GENSCAN 1.0	Date run:  5-Nov-116	Time: 18:13:41

Sequence gi568815575r:114905197_115117269 : 212073 bp : 38.05% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   1393   2219  827  2  2  134   54   616 0.843  55.04
 1.02 PlyA +   2450   2455    6                               1.05

 2.07 PlyA -   2464   2459    6                               1.05
 2.06 Term -   5912   5745  168  2  0   99   40    82 0.400   1.40
 2.05 Intr -  23185  23058  128  2  2   86   77    51 0.104   3.28
 2.04 Intr -  28957  28881   77  0  2   84   91    14 0.029  -0.46
 2.03 Intr -  37638  37166  473  0  2   47   71   240 0.066   9.15
 2.02 Intr -  38011  37871  141  1  0   29   36   126 0.237   1.13
 2.01 Init -  42711  42439  273  0  0   53  105   161 0.957  11.32
 2.00 Prom -  43866  43827   40                              -5.15

 3.03 PlyA -  44716  44711    6                               1.05
 3.02 Term -  46992  46733  260  1  2   56   45   168 0.588   4.03
 3.01 Init -  89512  89419   94  1  1   57   61   103 0.159   5.09
 3.00 Prom -  90504  90465   40                              -5.15

 4.11 PlyA -  92929  92924    6                               1.05
 4.10 Term -  93336  93179  158  1  2   91   39   126 0.147   5.11
 4.09 Intr -  96803  96701  103  2  1   65   38   124 0.165   3.93
 4.08 Intr - 100119 100001  119  1  2   65   95    11 0.155  -1.24
 4.07 Intr - 102880 102736  145  1  1   76   86    46 0.235   2.13
 4.06 Intr - 104470 104325  146  2  2   82   48    72 0.365   1.68
 4.05 Intr - 109378 109225  154  1  1   93   32    81 0.583   1.72
 4.04 Intr - 110625 110474  152  1  2   46  115    86 0.983   6.06
 4.03 Intr - 112106 111980  127  2  1   83   94    60 0.066   5.43
 4.02 Intr - 125638 125555   84  1  0   80  110     9 0.002   1.40
 4.01 Init - 134949 134719  231  0  0   61   52   162 0.317   8.21
 4.00 Prom - 136492 136453   40                              -5.25

 5.00 Prom + 136747 136786   40                              -6.25
 5.01 Init + 139458 139512   55  2  1   72  106    54 0.914   7.10
 5.02 Term + 142819 142886   68  2  2  103   49    51 0.682  -0.18
 5.03 PlyA + 143379 143384    6                               1.05

 6.06 PlyA - 143392 143387    6                               1.05
 6.05 Term - 154806 154661  146  1  2   80   38   106 0.865   1.89
 6.04 Intr - 157961 157773  189  0  0   73   78    77 0.897   3.84
 6.03 Intr - 159038 158760  279  0  0   65   75   140 0.962   6.93
 6.02 Intr - 164110 163998  113  0  2   44   31   132 0.009   2.20
 6.01 Init - 171268 171231   38  1  2   88   86    38 0.162   3.16
 6.00 Prom - 175726 175687   40                              -3.65

 7.02 PlyA - 176492 176487    6                               1.05
 7.01 Sngl - 178005 177604  402  0  0   70   43   230 0.965  12.73
 7.00 Prom - 178960 178921   40                              -5.35

 8.02 PlyA - 179129 179124    6                               1.05
 8.01 Sngl - 180103 179321  783  1  0   49   36   491 0.998  35.71
 8.00 Prom - 184521 184482   40                              -5.55

 9.00 Prom + 187810 187849   40                              -2.05
 9.01 Init + 193485 193629  145  2  1   67   53   107 0.564   5.48
 9.02 Intr + 196705 196858  154  2  1    3    8   197 0.437   1.41
 9.03 Intr + 197179 197627  449  1  2   67   86   265 0.512  16.27
 9.04 Term + 198869 198963   95  0  2   92   47    16 0.265  -5.09
 9.05 PlyA + 199385 199390    6                               1.05

10.02 PlyA - 199749 199744    6                               1.05
10.01 Term - 208139 208020  120  2  0  106   34   131 0.984   6.99

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 112073 111980   94  2  1   85   94    57 0.917   6.70
S.002 Term - 128456 128347  110  0  2   36   49   126 0.877   1.19
S.003 Init - 129111 129039   73  0  1   79   89    78 0.911   8.28


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:114905197_115117269|GENSCAN_predicted_peptide_1|275_aa
XVSVPIPVIGLRDEEKVFVNNTTCVLNDPNFVLIGSFVAFFIPLTIMVITYCLTIYVLRR
QALMLLHGHTEEPPGLSLDFLKCCKRNTAEEENSANPNQDQNARRRKKKERRPRGTMQAI
NNERKASKVLGIVFFVFLIMWCPFFITNILSVLCEKSCNQKLMEKLLNVFVWIGYVCSGI
NPLVYTLFNKIYRRAFSNYLRCNYKVEKKPPVRQIPRVAATALSGRELNVNIYRHTNEPV
IEKASDNEPGIEMQVENLELPVNPSSVVSERISSV

>gi568815575r:114905197_115117269|GENSCAN_predicted_CDS_1|828_bp
ngtgtatcagttcctatccctgtgattggactgagggacgaagaaaaggtgttcgtgaac
aacacgacgtgcgtgctcaacgacccaaatttcgttcttattgggtccttcgtagctttc
ttcataccgctgacgattatggtgattacgtattgcctgaccatctacgttctgcgccga
caagctttgatgttactgcacggccacaccgaggaaccgcctggactaagtctggatttc
ctgaagtgctgcaagaggaatacggccgaggaagagaactctgcaaaccctaaccaagac
cagaacgcacgccgaagaaagaagaaggagagacgtcctaggggcaccatgcaggctatc
aacaatgaaagaaaagcttcgaaagtccttgggattgttttctttgtgtttctgatcatg
tggtgcccatttttcattaccaatattctgtctgttctttgtgagaagtcctgtaaccaa
aagctcatggaaaagcttctgaatgtgtttgtttggattggctatgtttgttcaggaatc
aatcctctggtgtatactctgttcaacaaaatttaccgaagggcattctccaactatttg
cgttgcaattataaggtagagaaaaagcctcctgtcaggcagattccaagagttgccgcc
actgctttgtctgggagggagcttaatgttaacatttatcggcataccaatgaaccggtg
atcgagaaagccagtgacaatgagcccggtatagagatgcaagttgagaatttagagtta
ccagtaaatccctccagtgtggttagcgaaaggattagcagtgtgtga

>gi568815575r:114905197_115117269|GENSCAN_predicted_peptide_2|419_aa
MWESLELPRDLLNGFDQNADSDMDNEIQAEVVSDGDEEPIRNWSKGDSCYVLAKRLAAFC
PHPRDLWNFELERDDLGFLVEEIYKQQSIQEWRLEHQQDKWSSSVDPIPTEPSKLRSTGL
KFSLPTQQSEVDLGCSSLSTWGKGSCGHSFSRLKHSCLPPLKRAVDLPAQHLSSAKGQTA
SSSRSLNPVPPDWETPPGMHQQTPHRGELQLVGALLGQSFQRKEQSAIFAVLQPLLVIPR
QTGSGADYQQTPADLQQRGLTVRRKSNKQKGIVSTSTKKTSTPKPHPKVTNIKDQSLSSS
LEERSFWSEVLKPPRAGGGEYDNEITGRGVKKQLISLVGQIRIKELQLKELQRTTLSYAL
GEKMGTDVMPVFSTLTQHQKSIYVERKGQRILSSLVPGMEEESCFSIMSLMILEVSKAS

>gi568815575r:114905197_115117269|GENSCAN_predicted_CDS_2|1260_bp
atgtgggaaagtttggaacttcctagagacttgttgaatggctttgatcaaaatgctgat
agtgatatggacaatgaaatccaggctgaggtggtctcagatggagatgaggaacctatc
aggaactggagcaaaggtgactcttgttatgtgttagcaaagagactggcagcattttgc
ccccaccctagggatttgtggaactttgaacttgagagagatgatttagggtttctggtg
gaagaaatttataagcagcaaagcattcaagagtggcgcctggaacaccagcaagacaag
tggtctagctcagtggaccccatccccacagagcccagcaagctaagatccactggcttg
aaattctcgctgccaacacagcagtctgaagttgacctgggatgctccagcttgagcacc
tggggaaagggcagctgtggtcacagcttcagcagacttaaacattcctgcctgccacct
ctgaagagagcagtggatctcccagcacagcacttgagctctgctaagggacagactgcc
tcctcaagtaggtccctgaacccagtgcctccagactgggagacacctcccggcatgcat
caacagacacctcatagaggagagctccagctggtgggtgcccttctaggacaaagcttc
cagaggaaggaacagtcagcaatctttgctgttctgcagcctctgctggtgatacccagg
caaacagggtctggagcagactaccagcaaactccagcagacctgcagcagaggggcctg
actgttagaaggaaaagtaacaaacagaaaggaatagtatcaacatcaacaaaaaagaca
tccacaccaaaaccccatccaaaggtcaccaacatcaaagaccaaagtctgtcaagttct
ttggaggaaagaagtttttggtcagaggtcctaaaaccaccaagagctgggggcggtgaa
tatgataatgagataacaggcaggggagtaaaaaaacaattgatctccttggtgggtcaa
ataaggataaaggaacttcagctaaaggaacttcagagaacaactttatcctatgctttg
ggagagaagatgggaactgacgtcatgccagtattttctacactcacccagcatcagaag
agcatatatgttgaaagaaaaggtcaacgtattctgtcatccctggttccaggtatggaa
gaagagagttgttttagtatcatgtctctgatgattttggaggtatccaaagccagttga

>gi568815575r:114905197_115117269|GENSCAN_predicted_peptide_3|117_aa
MKICITPPGNKPQPAEVLAEGKGNTEWVVEEDLLRTPGYFSQMVVELAKTQISMVQVEDI
PLARASLNAPSVGDGRILPGVVVCCDSATLNSNAKPHNHFALPLPSTWILSSRGTQR

>gi568815575r:114905197_115117269|GENSCAN_predicted_CDS_3|354_bp
atgaagatttgcatcactccaccaggaaataaaccacaacctgcagaggtgcttgctgaa
ggcaaagggaatacagaatgggtagtagaagaagatttactcaggactccagggtacttt
agtcagatggtggtggagctagccaaaactcagatttctatggttcaagtggaggatatc
cctctagccagggctagtttaaatgctccttctgtaggtgatggcagaattctgcctggt
gttgtggtctgctgtgacagtgcaacactgaattccaatgcaaagccccacaatcacttt
gctctccctctcccaagcacatggattctctcttcgcgtggcactcagaggtga

>gi568815575r:114905197_115117269|GENSCAN_predicted_peptide_4|472_aa
MDEESEGGCSGKVVFPWILPQPLLAKLPSVSTLFCHHWSADVCWCLLVCSSALLDVQLLV
SMSAMVSSFYGHRMGDMGVSLICLIKGGSMPRPHSNKQAGGKEKQRGNIKVLNLGEMAFV
CLAIGCLYTFLISTTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKE
CTVEYELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAKIHTLLPWQCTNGSEVQSSWA
ETTYWISPQVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTA
TVENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLRFWL
PFGFILILVIFVTGLLLRKPNTYPKMNGSGLAMEGKQTTRVVRLEEEALPQAHFGDSVTV
GSFQIATDSVVHGHKGTGALQQFGGHQTVIGVRGAEKQPHLPFPRVFKFFGG

>gi568815575r:114905197_115117269|GENSCAN_predicted_CDS_4|1419_bp
atggatgaggagtcagaaggaggatgtagtgggaaggtggtcttcccctggatactcccc
caaccgctcctggccaaactcccctcggtgtccacgttgttctgccatcactggtctgct
gatgtctgctggtgtctgctggtgtgttcctctgctcttcttgatgtccaactgctcgtg
tccatgtccgctatggtctcaagtttttatgggcacaggatgggggacatgggtgtttcc
ctcatttgtttgatcaaaggtggctcaatgccaagaccacattctaacaagcaggctgga
ggaaaggaaaaacagagaggcaatatcaaggttttaaatctcggagaaatggctttcgtt
tgcttggctatcggatgcttatatacctttctgataagcacaacatttggctgtacttca
tcttcagacaccgagataaaagttaaccctcctcaggattttgagatagtggatcccgga
tacttaggttatctctatttgcaatggcaacccccactgtctctggatcattttaaggaa
tgcacagtggaatatgaactaaaataccgaaacattggtagtgaaacatggaagaccatc
attactaagaatctacattacaaagatgggtttgatcttaacaagggcattgaagcgaag
atacacacgcttttaccatggcaatgcacaaatggatcagaagttcaaagttcctgggca
gaaactacttattggatatcaccacaagttaaacctttgccgccagtctatcttactttt
actcgggagagttcatgtgaaattaagctgaaatggagcatacctttgggacctattcca
gcaaggtgttttgattatgaaattgagatcagagaagatgatactaccttggtgactgct
acagttgaaaatgaaacatacaccttgaaaacaacaaatgaaacccgacaattatgcttt
gtagtaagaagcaaagtgaatatttattgctcagatgacggaatttggagtgagtggagt
gataaacaatgctgggaaggtgaagacctatcgaagaaaactttgctacgtttctggcta
ccatttggtttcatcttaatattagttatatttgtaaccggtctgcttttgcgtaagcca
aacacctacccaaaaatgaatggcagtggcttggcaatggaaggcaaacaaaccacaaga
gttgtcagactggaggaggaagctctgccccaagctcattttggtgatagtgttacagta
ggaagtttccaaattgccactgacagtgttgtccatggtcacaagggcacaggggctctc
caacagtttggtggtcatcagactgtcataggggtgaggggagcagagaagcagccccac
ctaccctttccacgtgtcttcaagttctttgggggttga

>gi568815575r:114905197_115117269|GENSCAN_predicted_peptide_5|40_aa
MVYTKLKRRCKTKFDADLAGCSPDVIVEAIFNHIDNVNIH

>gi568815575r:114905197_115117269|GENSCAN_predicted_CDS_5|123_bp
atggtctacaccaaattgaagagaaggtgtaaaaccaaatttgatgcagacctggcaggc
tgtagcccagatgtaatagtggaagccatatttaaccatattgacaatgtcaacatacac
tag

>gi568815575r:114905197_115117269|GENSCAN_predicted_peptide_6|254_aa
MKDDERNMSALVGVHDGAQERLRVGLQVLLDVHDLVPGEECLWRRLGRQGGTSYVILDTN
HECGECGDKSHKCKQCGKALISLKTVQRNRVTHTLIFSVHFVKHQRTHTGEKAYKCTQCS
KAFSFFSSCRIHERIHTREKPYELVGAQLISAKGKYKFTASIKVFLQSADGCVYNPLPRH
RVQIGAFLQSADWCIYNPLARHRVLTGNKETQGEGDKQENGQLVEQSEHTHLSMKFAVLY
DYGSCHSNVMMITD

>gi568815575r:114905197_115117269|GENSCAN_predicted_CDS_6|765_bp
atgaaggatgatgagagaaacatgtctgcactggtgggggttcatgacggcgctcaagag
cgcctccgagtcggtctccaagtcctcctggacgtgcacgatctggtgcctggtgaagaa
tgcctatggcgccgcctgggtcgccagggaggcacatcatatgtcatactggacacaaac
catgagtgtggggaatgtggagataagtcacataaatgtaaacaatgtgggaaagcctta
atttctctcaagactgttcaaagaaatagagtaacacacactttgattttctcagttcat
tttgtaaaacatcagagaacgcacacaggagagaaagcttataaatgtacacaatgtagt
aaagccttcagtttcttcagtagttgtagaatacatgaaagaattcacactagagaaaaa
ccctatgaattggtaggtgctcaattaatatctgctaaagggaaatacaagttcacagcc
agcattaaggtgtttttacagagtgctgatgggtgcgtttacaatcctttacctagacac
agagtgcagattggtgcatttttacagagtgctgattggtgcatttacaatcctttagct
agacatagagtactgactgggaataaagagacccaaggtgagggagataaacaggagaat
ggtcagttggtggagcagtcagagcacacacatttatccatgaagtttgccgtcttatat
gactatggctcatgtcactccaatgtaatgatgatcacagattaa

>gi568815575r:114905197_115117269|GENSCAN_predicted_peptide_7|133_aa
MDKFLNTYTLPRLNQEEVESLNRPITGSEIVAIINSLPGKKSPGPDGFTAELYQRYKEEL
VPFLLKLFQSIEKEGIHPNSFDEASIILIPKPGRDTTTKENFRPISLMNIDAKILNKILA
KRIQQHTKKAYPP

>gi568815575r:114905197_115117269|GENSCAN_predicted_CDS_7|402_bp
atggataaattcctcaacacatacaccctcccaagactaaaccaggaagaagttgaatct
ctgaatagaccaataacaggctctgaaattgtggcaataatcaatagcttaccaggcaaa
aaaagtccaggaccagatggattcacagccgaattataccagaggtacaaggaggagctg
gtaccattccttctgaaactattccaatcaatagaaaaagagggaatccaccctaactca
tttgatgaggccagcatcatcctgataccaaagccgggcagagacacaaccacaaaagag
aattttagaccaatatccttgatgaacattgatgcaaaaatcctcaataaaatactggca
aaacgaatccagcagcacaccaaaaaagcttatccaccatga

>gi568815575r:114905197_115117269|GENSCAN_predicted_peptide_8|260_aa
MELKAKARELREECRSLRSRCDQLEESVSVMEDEMNEMKQDGKFREKRIKRNEQSLQEIW
DYVKRPNLHLIGVPESDGENGTKLEKTLQDIIQENFPNLARQANIQIQEIQRTPQRYSSR
RATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTADLSAETLQARREWGPIFNI
LKEKNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQ
PLQKHAKMLRPSRLGRNCIN

>gi568815575r:114905197_115117269|GENSCAN_predicted_CDS_8|783_bp
atggagctgaaagccaaggctcgagaactacgtgaagaatgcagaagcctcaggagccga
tgcgatcaactggaagaaagtgtatcagtgatggaagatgaaatgaatgaaatgaagcaa
gacgggaagtttagagaaaaaagaataaaaagaaacgagcaaagcctccaagaaatatgg
gactatgtgaaaagaccaaatctacatctgattggtgtacctgaaagtgacggggagaat
ggaaccaagttggaaaagactctgcaggatattatccaggagaacttccccaatctagca
aggcaggccaacattcagattcaggaaatacagagaacgccacaaagatactcctcgaga
agagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatg
ttaagggcagccagagagaaaggtcgggttacccacaaagggaagcccatcagactaaca
gctgatctctcggcagaaactctacaagccagaagagagtgggggccgatattcaacatt
cttaaagaaaagaattttcaacccagaatttcctatccagccaaactaagcttcataagt
gaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccagg
cctgccctaaaagagctcctgaaggaagcactaaacatggaaaggaacaaccggtaccag
ccactgcagaaacatgccaaaatgttaagaccatcaaggctaggaagaaactgcatcaac
taa

>gi568815575r:114905197_115117269|GENSCAN_predicted_peptide_9|280_aa
MTELLQGWVATIIVALGCHFSPAGTRETKQFETRRNSPQCSTVVTADHEIQQQQQQQQQQ
QQQQQHFKPITLMNIDAKFLSKILANQIQQHIKKLINTINIRSSVTEIRQEKEIKGIQIE
REEVKLSLFADDMILYLENPIVSAQKLLKISNFSEISRNKINVQNSQAFLYTDNRQAESQ
IMNELPFTIATKRIKHLGVQLTRKGSEGPLQGELQTTAQGNQREHKQMGKHSILTDKKKK
YCENGQTAQGTWMEMEAIILSKHTQEQKTKHHMFLLISGS

>gi568815575r:114905197_115117269|GENSCAN_predicted_CDS_9|843_bp
atgactgagctcctgcagggatgggttgccaccatcattgtagctctaggctgccatttt
tctcctgctggtaccagggagactaaacagtttgaaaccaggaggaattccccacagtgc
agcacagtggttacagcagatcacgagatacaacaacaacaacaacaacaacagcagcag
caacaacaacaacaacacttcaagccaataaccctgatgaacatcgatgcaaaattcctc
agtaaaatactggcaaaccaaatccagcagcacatcaaaaagcttatcaatacgatcaat
attagaagttctgtcacggaaatcaggcaagaaaaagaaataaaaggtattcaaatagaa
agagaggaagtcaaactgtctctttttgcagatgacatgatcctatatttagaaaaccct
attgtctcagcccaaaagcttcttaagataagcaacttcagcgaaatctccagaaacaaa
atcaatgtgcaaaattcacaagcattcctatataccgataacagacaagcagagagccaa
atcatgaatgaactcccattcacaattgctacaaagagaataaaacacctaggagtacag
ctaacaaggaagggaagtgaaggacctcttcaaggagaactacaaaccactgctcaagga
aatcagagagaacacaaacaaatgggaaaacattccatactcacagataagaagaagaaa
tactgtgaaaatggccaaactgcccaagggacatggatggaaatggaagccattatcctc
agcaaacatacgcaggaacagaaaaccaaacaccacatgttcttgcttataagtggaagc
tga

>gi568815575r:114905197_115117269|GENSCAN_predicted_peptide_10|39_aa
ERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSVA

>gi568815575r:114905197_115117269|GENSCAN_predicted_CDS_10|120_bp
gaaagactttgtttgcctcatcatattttggaagaacgaggacttgtgaaagttggtgtc
acagttcaggcgctccttgaattaccaacaaccaaggcatctcagctttctgtggcttaa