GENSCAN 1.0	Date run:  5-Nov-116	Time: 17:21:12

Sequence gi568815596f:238748216_238948695 : 200480 bp : 47.73% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +  14012  14051   40                              -2.76
 1.01 Init +  27734  27922  189  1  0   62   65   163 0.451   8.67
 1.02 Term +  29970  30125  156  2  0   47   52   117 0.458   1.93
 1.03 PlyA +  33561  33566    6                               1.05

 2.00 Prom +  41467  41506   40                              -4.36
 2.01 Init +  43336  43427   92  0  2   81  103    37 0.038   2.50
 2.02 Intr +  65066  65207  142  2  1  114   17   128 0.348   8.66
 2.03 Intr +  65817  65881   65  2  2  100   55    18 0.107  -2.78
 2.04 Intr +  70484  70687  204  2  0   61   30   148 0.198   4.62
 2.05 Intr +  84411  84499   89  0  2   56  115    46 0.137   3.71
 2.06 Term +  93639  93802  164  1  2   22   47   194 0.420   6.80
 2.07 PlyA +  94317  94322    6                               1.05

 3.00 Prom +  96252  96291   40                              -5.16
 3.01 Sngl + 100001 100483  483  1  0  115   43  1116 0.999 105.88
 3.02 PlyA + 102449 102454    6                               1.05

 4.29 PlyA - 102581 102576    6                               1.05
 4.28 Term - 105930 105854   77  1  2   92   41    66 0.512   0.30
 4.27 Intr - 112031 111858  174  0  0   84   53   154 0.731  11.41
 4.26 Intr - 117490 117376  115  1  1   50   94    -4 0.078  -3.58
 4.25 Intr - 118996 118855  142  0  1  123   96    54 0.745  10.06
 4.24 Intr - 120986 120323  664  0  1   49   17   184 0.166  -1.77
 4.23 Intr - 124755 124522  234  1  0   32   10   190 0.157   3.26
 4.22 Intr - 127201 127078  124  1  1   45   25   113 0.186   0.86
 4.21 Intr - 134669 134506  164  0  2   66   92    61 0.158   3.99
 4.20 Intr - 136091 135950  142  2  1   74   89     5 0.060  -0.87
 4.19 Intr - 136815 136537  279  0  0   68   73    75 0.031   1.67
 4.18 Intr - 142077 141902  176  1  2   72   66    72 0.036   3.06
 4.17 Intr - 143366 143195  172  2  1   70   21    74 0.102  -1.58
 4.16 Intr - 145545 145430  116  1  2   16   70   117 0.104   2.87
 4.15 Intr - 147391 147292  100  1  1   25   86    63 0.027  -0.52
 4.14 Intr - 149030 148903  128  0  2   31   77    90 0.186   2.60
 4.13 Intr - 152580 152316  265  0  1    3   61   149 0.212   0.79
 4.12 Intr - 161475 161289  187  2  1   57   80   110 0.841   6.79
 4.11 Intr - 162837 162706  132  2  0   34   84   108 0.369   4.76
 4.10 Intr - 163156 162999  158  1  2   53   91    53 0.042   0.91
 4.09 Intr - 165898 165774  125  2  2   93   51    33 0.038   0.40
 4.08 Intr - 166603 166475  129  2  0   95   71    46 0.027   4.27
 4.07 Intr - 167272 167143  130  1  1  115   70   -12 0.024  -0.03
 4.06 Intr - 172365 172235  131  1  2   38   98    46 0.222   1.01
 4.05 Intr - 173991 173807  185  2  2   -6   75   113 0.139   0.03
 4.04 Intr - 177492 176643  850  1  1   27   93   278 0.062  12.63
 4.03 Intr - 177843 177723  121  0  1   84   86    63 0.023   5.77
 4.02 Intr - 179951 179839  113  0  2   89   64    66 0.007   4.40
 4.01 Init - 182051 181979   73  2  1   77   47    22 0.003  -1.77
 4.00 Prom - 185402 185363   40                              -7.06

 5.00 Prom + 186475 186514   40                              -2.96
 5.01 Init + 193772 194250  479  1  2   87   72   172 0.355  10.66
 5.02 Term + 195564 195756  193  0  1   30   46   144 0.374   1.29
 5.03 PlyA + 196345 196350    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  99138  98447  692  1  2  102   50   287 0.960  20.05
S.002 Init -  99260  99221   40  2  1   77   37    47 0.870  -1.14
S.003 Term - 171301 171194  108  1  0  102   46    80 0.941   3.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:238748216_238948695|GENSCAN_predicted_peptide_1|114_aa
MRKKDNSAAFPVPVLSSWMACGPGVVQSQAHREREAMQVEMPKQQRDAAGDKLGNPELPG
ACRERVHLTGDFVQKRAGGNGKSARKIPPGPRGPAWLMKNMPVFPAKVVSCQDK

>gi568815596f:238748216_238948695|GENSCAN_predicted_CDS_1|345_bp
atgagaaagaaggataactcggctgccttcccagttcctgttctgagcagctggatggcg
tgtggacctggagtggtgcagtcacaggcacatcgagagcgagaggcaatgcaagtggaa
atgccaaagcaacagagggatgcagcaggtgacaagctgggcaacccggagttacctggg
gcctgtcgagaaagggttcatctcaccggtgactttgtgcagaagagagcaggcgggaac
gggaaaagcgcacgtaagatcccgccaggccctcgaggccccgcatggctgatgaagaac
atgcctgtgtttccggccaaggtggtttcctgccaggacaaatga

>gi568815596f:238748216_238948695|GENSCAN_predicted_peptide_2|251_aa
MSTDGPAPAAALPVVSMLTGREGRPGIIWIILTASLSPGPSEDRKHQCRFLRCKEPAVLD
PLLSPSHEALKTPLHGHMGPGGLHSGALSFVSNRTEHSLRTLKLEVSARAIRQEKEIRVI
QTGNEVKLYLFTNDVTLYLENPHDSTKRLLELTNNFSKVPGYKINVRNHRQLNLSTLLVG
MQNGLAILENSLAVSSKEPPGIKEPLLLQPASELQRSCYTSLQEPDVQTTPLDIWCLDTM
LPRKPNTSTLG

>gi568815596f:238748216_238948695|GENSCAN_predicted_CDS_2|756_bp
atgagcacagacgggccagctcccgcagccgcccttccggtagtgtccatgctcacgggg
cgggagggcaggccggggattatctggatcatcctcacagccagtttgtcaccaggtccc
tctgaggacaggaaacatcagtgccgtttcttgcgttgcaaggagccagctgtgctggac
ccattactgtcaccttcccacgaagccctcaagacaccgctgcatggtcacatgggccct
ggaggcctccacagtggtgctctgtcttttgtctccaaccggacagagcactcgctgagg
actcttaagctggaagtctcagccagagcaatcaggcaggagaaggaaataagagtcatc
caaacaggaaatgaagtcaagctatatctcttcaccaacgatgtgactctatacctagaa
aaccctcatgactccaccaaaaggctcctggaactgacaaacaacttcagtaaagttcca
ggatacaaaatcaatgttcgaaaccatcggcagctgaacttgtctacattgctggtggga
atgcaaaatggtctggccattctggaaaatagtttggcagtttcctctaaagaaccacct
ggaatcaaggagccgctcctgctgcagccagcttccgagctgcagcgctcctgctatacg
tctctccaggaaccggatgtgcagaccacacctctggacatctggtgcctggacaccatg
ctgccaagaaaaccaaacacctccaccctgggctga

>gi568815596f:238748216_238948695|GENSCAN_predicted_peptide_3|160_aa
MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS
FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV
LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH

>gi568815596f:238748216_238948695|GENSCAN_predicted_CDS_3|483_bp
atggaggagggctccagctcgcccgtgtcccccgtggacagcctgggcaccagcgaggag
gagctcgagaggcagcccaagcgcttcggccggaagcggcgctacagcaagaagtcgagc
gaagatggcagcccgaccccgggcaagcgcggcaagaagggcagccccagcgcgcagtcc
ttcgaggagctgcagagccagcgcatcctggccaacgtgcgcgagcgccagcgcacccag
tcgctcaacgaggccttcgcggcgctgcgcaagatcatccccacgctgccctctgacaag
ctgagcaagatccagacgctcaagctggccgccaggtacatagacttcctctaccaggtc
ctgcagagcgacgagatggacaataagatgaccagctgcagctacgtggcccacgagcgc
ctcagctacgccttctccgtgtggcgcatggagggcgcgtggtccatgtccgcctcccac
tag

>gi568815596f:238748216_238948695|GENSCAN_predicted_peptide_4|1801_aa
MGRLRGCERGPKRCLDKAMYRKTKELFSPPLKAFPGDGGHGDCIGQLCALSMKHLLQDSL
RNTFFYMEGPVLHRSQPQLTLGSQEALRRFAGRFPRTPGYNKVAFCFFQEHSMTRAVNLS
CETTEGETTFSKNRAQTVPVSLSPNCSMAWSAANVSAALKGKALLWSQHAELASTPLHAA
PHQHWLGLNLSSLAPRCKPWNANPKGQTPRGSQVPGADTFLALAVMAQMEAKTTPLSTGR
LVLLPREQEPRHRLCTEFSIYFSQGGYAKAVCLSLSGSHLQPVPVDSVGSTVMLGKDPNT
RTKHVDSCQCQNGRKQGKGSWLRPFANRVQRCRHLEPARSYQTGSHLCLQRLLSQRQDRG
AWLCQVSFWDEPILLSQVGHDGEARRPDGFCQTPSRSPWLMEEEDKWRRGGGRATLSTAS
SNCTRVWAPPECCKPPCIIKTEAQARAAPPSKVEMMSAKGILKQMEWYRWWVTKTQVEGT
CCHGLSQEDGKVIPSLMSLSGAVFVPCGCCTKQPQTDSFRSGFSQSSGGRNLNQVGPVSW
VTESASDETCWKYVWRMGESTQPWMGRQEKGSPEPSPDGPGPRRRGILACGLKASVGQIA
SVHVGPYVWRPTGIPMPHTLHPADPGTRCPPGDMRLVAQGSDLVTLSLQSWKPPPWGPQA
TPSPQCSWVLACQLPGELMVNMARMHVEQTVTRSEKQGGGGTNECHAWESREYHPGHWAG
DCYGASPGFRNPCPLGQAKPFPSPECPFLPPSALSHTHHPGASPWPVLSAAMNAVWLWSR
ATSYGFQTQTTSRCMLASKQAHHPHSVTLPECPECWWKEQGSPESPYPASPGTMRESERS
NAAAECAPLSSCSREIPLEMPSVQRKGPSKNQRLQPREKCGRRNAGIPSLTATFKGGVGG
FGEYFCGTMRQRGLASHEQPDGRRASHRSQYLGPASPGTLSTPKVPEAANNGGRRSALPE
CRTPHCMSGIRLKTLNHLTQSICQGKDVCQTVLSPSSSPYTGTQTPGSPQASGQHTETQK
SRPKCRPEQGIGHAGQAPEQRSASVGIQAGVATSMAGGLADPSPAGSWLCGIPWCCHLPD
HVQRPMQAFAPDAPLPQASQEKRVSTSVWTFSSMGGRSTDAPGLLCPLPTPLRGAGVTCR
LVGLGRVNWVCAAQPWNLPLAAVSRPQGAGTFRPCFRKAPCAPDLREACEVKVESPDSES
CNPRPRSLGIPGADLAAHWHFSPGTTGSQRPHLKELASLTAPASSRATQKASFDFVERSF
DHGGLLKSRYHFPGLQADRLPGSSLIMGQKEYRESCWKLSDKSDPVGGAVGGVLEEAVFF
LEKTHSCTFCLICGETDSSHSYVSSTQQKDCKQPGLSKCEGNTKDPAAAPHDTSYAKPSA
ERVPLGRMPVTSRLSICRMGTTLVTCPVNRPVLLTALGPISHSVQTSPRCSLRKQALQES
MPFSQWRAPQPRPLQGNHLNCQAFAARAPTRAICCLMLVRTTLSLTTQTPMPTDPSEMNF
LSLENARECRWMPPPSLDHLENQMDTSPCTGRHAALPPALLSRGLVSRPYHACGSAHTGT
TLSPANNARVCGQQRILVMVAAGDHGQSPTLEHGLSHRHSHSQDCLVSTVGNSIFHLCLK
KGQFGFLWSHRMIRNSGVVAPPMLQPASFPPAAGFEDGKGPRNKRLAPLFGANTRPPGCQ
QKKKKVPKDQMAQLALALQIQRLNLQACGWATQSQETPGVSLSSGSSTCTHEEQESHDSG
GGTNPLRASEPRTSLKRSTERADEPWAVDSLLMEARVKGKSELKKGEMCPSLKALLFGSE
K

>gi568815596f:238748216_238948695|GENSCAN_predicted_CDS_4|5406_bp
atgggcaggttaagaggatgcgagagaggccctaaaagatgtctggacaaggctatgtac
cgtaaaacaaaagagctattctcacctcccctgaaggccttcccaggtgatgggggccat
ggagactgcattggacagctctgtgcactgtccatgaagcacttgctgcaggactccctt
agaaacactttcttctacatggaaggccccgtcctccacaggtcccagcctcagctgaca
ctcgggtcccaggaggctctgcgaaggtttgctgggcggttcccccgcacgccgggctac
aacaaagtggctttctgcttcttccaggaacacagcatgacacgtgctgtgaacctcagc
tgtgagacaaccgaaggagagacaacattcagcaaaaacagagcccaaactgtccccgtt
tctctcagccccaactgctccatggcttggagtgcagcaaatgtttcagccgcgctcaaa
gggaaggctttgctctggagtcagcatgcagagctcgcctcgactcccctccatgccgct
cctcaccagcactggctgggtttgaatctcagctccctggctcctcgctgtaagccctgg
aatgcaaaccccaagggccaaacaccccgaggctctcaggtcccaggcgcggacaccttc
ctggccttggctgtcatggcccagatggaagcaaagacaactcccctctccacaggtcgg
ctggtcctcctgccccgagagcaggagcccaggcacaggctctgtacagagttctccatc
tacttctcccagggtggctatgcaaaggccgtctgcctctcgctctctgggtcccacctg
cagcctgtcccagtggattctgtaggctccacagtgatgctgggaaaagacccaaacacc
cggacaaagcacgtggacagctgccaatgccaaaacggcaggaagcaagggaaaggcagc
tggctccgaccctttgccaaccgtgtgcaacgctgcaggcacctagagccagcgaggagc
taccaaactggttcccatctatgcttgcagcggctgctgtcgcagaggcaggacaggggt
gcatggctatgccaagtatccttctgggatgagccgattctcttgtcccaggtcgggcat
gatggagaggccagaagacctgatggcttctgccagacacccagccgatccccatggctt
atggaggaagaagacaagtggagacggggaggtggtcgggcgaccctttccacggccagc
agcaactgcacccgtgtctgggcacctcctgagtgctgtaagcccccatgcatcatcaag
acggaggcccaggcaagggcagcaccaccgtccaaagtggagatgatgtcagcaaagggg
atattgaagcagatggagtggtacagatggtgggtcactaaaacgcaggttgaaggtacg
tgctgccacgggctaagccaagaagatgggaaggtcattccttctttgatgtcactttcg
ggggctgtatttgttccttgtggctgctgcaccaaacaaccacaaactgatagcttcaga
agtggattctcccagagttctgggggcagaaatttgaatcaagtcgggcctgtttcctgg
gtcactgagtcagcgagtgatgagacctgctggaaatatgtgtggaggatgggcgagtcc
actcagccttggatggggcggcaggaaaaaggcagccccgagcccagcccagatggtcct
ggccccagacgacgtggcatcttagcctgtgggttgaaggcatctgtggggcagattgcc
tctgtacacgttggcccctacgtgtggcggcccacaggcatacccatgccacacacactc
cacccagcagaccccggtaccagatgtcccccaggagacatgcgtttggtggctcagggt
agtgacctggtgactctcagtctccagagctggaagcctccaccctggggtccacaagca
acacccagcccccagtgctcatgggtgctggcatgccagctgcctggtgagctcatggtc
aacatggcacggatgcatgtggagcagacggtgactcgttcagagaagcagggaggtggt
ggcacaaatgaatgccatgcttgggagagcagggaataccacccaggacactgggcaggt
gactgctacggggccagcccaggcttccgcaacccctgccccctgggccaggccaagccc
tttccctcccccgagtgccctttcctgcccccgagtgccctttctcacactcaccacccc
ggggcctctccctggcccgtgctcagcgcagccatgaatgcggtctggctgtggagtagg
gcaacctcctacggcttccagacccagacaaccagcagatgcatgctggcttccaaacaa
gctcaccacccccactcagtgacactcccagaatgtccagagtgttggtggaaagagcag
ggcagccccgaaagtccatacccagcgagtccagggaccatgcgggagagcgagagaagc
aatgcagctgcagaatgtgcaccgctcagcagctgctccagggaaattccactagaaatg
ccttctgtccaaaggaaaggaccatctaagaatcaacgtctgcaaccaagggagaagtgc
ggcaggaggaacgcagggataccgtccctgacagcgactttcaaagggggcgttggagga
tttggtgaatatttctgtgggacgatgagacagcgagggctggccagccacgagcagcca
gatggcaggagagcatcccaccgctcccagtacctgggccctgcaagtccaggaaccctt
tcaaccccgaaagtgccagaagctgcgaacaatggcggccggcgatcggcgcttcctgag
tgccggaccccacactgtatgtctgggattcggctgaagactctcaaccatctcacgcaa
tcgatctgccaggggaaggacgtttgccagaccgtcctctcaccctccagctccccctac
actggaacacagacacctgggagcccgcaggcctcaggacagcacacagagacacagaag
tccaggccgaaatgcagaccagaacaaggaataggccatgccggccaagccccagagcag
cggtcagcgtctgtggggatacaggctggagtggccacaagcatggcaggtggcctggct
gaccccagcccagcaggctcctggctgtgtggcatcccctggtgctgccacctccctgac
cacgtgcagaggccaatgcaggcctttgctccggatgctccactgccccaggcttctcag
gagaaacgtgtctccacgagcgtgtggacattctcttccatggggggacgctccactgat
gcccctggcctgctctgccccttacccacaccactcaggggagctggagtgacctgcaga
ctggtgggtttgggaagagtcaactgggtgtgcgcagctcagccctggaatcttcctctg
gcagcagtgagccggccccagggagcaggcactttccggccatgcttccggaaggctccc
tgtgctcctgacctgcgggaggcctgcgaggtgaaggtggagagccctgactcagagtct
tgcaatcccaggcccaggagccttgggatccctggggcagacttggcagcccactggcac
ttcagcccaggcacaactggcagccaacgaccccatcttaaagaactggcttctctgact
gccccagcttccagcagagcaacccagaaagcatcctttgactttgttgaaagaagcttt
gatcatggaggacttttaaaatcaagatatcacttcccaggactccaagcagacaggctc
ccaggaagttccctcatcatgggacaaaaggaatatagagaaagctgctggaagctcagt
gacaagtctgacccagtgggtggtgctgttggaggagtcttggaagaggccgtcttcttc
ttggagaagacccacagctgcaccttctgtctcatctgtggagagacagattctagtcat
tcttatgtctccagcacccagcagaaggactgcaaacagccaggactcagtaaatgtgag
ggcaacacgaaggaccctgcagctgccccacatgataccagctacgcaaaaccatctgcg
gagcgtgtgcctctgggccgtatgcccgtgacctccagactttccatctgcagaatggga
acaacactggtcacctgtccagtaaatcgtcctgtactcctcaccgcacttggacctatt
tcccattctgtgcaaacaagtccacgttgctcgcttcggaagcaggctttgcaggagtcg
atgcctttctctcagtggcgtgctccccagcctcgtcctttgcaaggaaaccacttaaac
tgccaagcatttgctgcccgcgcacctacccgtgccatctgctgcctgatgctggtgcgg
acgacactgtctctcacaacccagacaccgatgccaactgacccctctgagatgaacttc
ctttctctagaaaatgcgagagaatgcaggtggatgccacctccatcactggaccatctt
gagaatcaaatggacacaagcccctgcaccggccggcacgcagcgctccctccagccttg
ctgagccgtgggcttgtgtcccggccctaccatgcctgtggatcagcccacactggcacc
acactgagcccagccaacaatgcccgagtgtgtgggcaacagaggatactggtcatggtg
gcagctggtgatcacggacagtcaccaaccttggaacacggcttgtcccacagacacagt
cacagccaggactgcttggtgtccactgtgggaaacagcatcttccatctctgtctcaag
aagggccagtttggtttcctgtggtcccatagaatgataagaaattcgggggttgtggcc
cctccaatgttacagccagcctccttccctccagctgctggcttcgaggacggaaaaggc
cctcgaaacaagaggctggctcctctgtttggggcaaacacaagacccccaggctgccag
caaaaaaaaaaaaaagttccaaaagaccagatggcacagctggccctggccctgcaaatt
caaagactcaacctgcaggcatgtggctgggccacccaaagccaggagacgccaggtgtc
tccctgtcttctgggagcagcacctgcacacacgaagagcaggaatcccatgactctgga
ggtggcaccaaccccttgagggcctctgagcccagaaccagcctgaagcggtccaccgag
cgggcagacgagccctgggctgtggacagcctgctgatggaggcgagagtgaagggaaaa
tctgaactaaagaaaggagagatgtgtccaagtttaaaggcactgctcttcgggtctgag
aagtaa

>gi568815596f:238748216_238948695|GENSCAN_predicted_peptide_5|223_aa
MDVYVLEVLHRRHNTGWVPRAKCSKQKLSAELLLLGEGALLPHRTSMSQEAQELVATQAG
QGTGSPRTRPGSDPEAWRCAAPEAAPGIQAWILSLAQHQQSNREALLATGKEVNTVNGPE
QETTKVEGSPHGACMDGWYCGQGACPRQCLEGAGSSCRARPCYVWVPPQILLPTGLSDWA
QAQAILPVSTKVKAQLEQRTGMLRYGLGIAKSMHMKMWEPWMP

>gi568815596f:238748216_238948695|GENSCAN_predicted_CDS_5|672_bp
atggacgtgtatgtcctggaagtgctccatcgcaggcacaacacaggctgggtccccaga
gcaaaatgcagcaagcagaagctttcggctgagctcctgttgctgggtgaaggagccctt
cttccccatcggacgtccatgagccaggaagcccaggagcttgtagcaactcaagccgga
caaggaacaggatctcctagaacacgacccggctctgatccggaggcctggagatgtgca
gccccggaggcagctcccgggatacaggcatggatactctccttagcacagcatcagcag
agcaaccgggaggcccttctggctactgggaaggaggtgaacacagtgaacgggccagag
caggaaacaaccaaggtggagggcagcccccatggcgcctgtatggatgggtggtactgt
ggccagggagcctgcccgcggcaatgcctggaaggagccggctcctcctgcagagccagg
ccctgctacgtctgggtcccaccacagatcctgctcccaactgggctgtctgattgggct
caggcccaggccatcctgccagtctccaccaaagtcaaggcccaactggaacagcggact
gggatgctgagatatggactgggaatagccaagtccatgcacatgaaaatgtgggaaccc
tggatgccctga