GENSCAN 1.0	Date run:  5-Nov-116	Time: 08:04:36

Sequence gi568815596f:202165942_202403057 : 237116 bp : 43.14% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5467   5575  109  0  1   38   93   153 0.807   9.21
 1.02 Intr +  13354  13569  216  2  0   11    8   187 0.086   1.48
 1.03 Intr +  18812  18902   91  0  1   96   84    44 0.534   3.85
 1.04 Intr +  20992  21157  166  1  1   43   84    12 0.353  -3.74
 1.05 Intr +  22211  22325  115  1  1   80   91   124 0.965  11.92
 1.06 Intr +  24233  24552  320  0  2  103   97    60 0.815   4.08
 1.07 Intr +  27360  27562  203  2  2   42   94   184 0.795  12.48
 1.08 Intr +  28249  28421  173  1  2   68   93   217 0.999  19.79
 1.09 Term +  30859  31109  251  2  2  117   50   317 0.939  26.67
 1.10 PlyA +  31597  31602    6                               1.05

 2.06 PlyA -  32608  32603    6                               1.05
 2.05 Term -  35852  35439  414  2  0   74   55   268 0.619  17.36
 2.04 Intr -  44865  44794   72  0  0   82   81    33 0.609   1.60
 2.03 Intr -  48493  48416   78  1  0   96   79    33 0.759   2.95
 2.02 Intr -  54165  54091   75  0  0   59  109    63 0.881   5.21
 2.01 Init -  57942  57895   48  0  0   70   93    -7 0.541  -1.05
 2.00 Prom -  66937  66898   40                              -7.86

 3.00 Prom +  68231  68270   40                              -2.96
 3.01 Init +  72509  72557   49  1  1   77  102    85 0.603   8.02
 3.02 Intr +  72609  72849  241  1  1  100   29   202 0.988  12.11
 3.03 Term +  73582  73771  190  1  1    7   54   182 0.956   3.62
 3.04 PlyA +  74180  74185    6                               1.05

 4.00 Prom +  88516  88555   40                              -5.86
 4.01 Init + 100001 100045   45  1  0   74  100    39 0.898   4.40
 4.02 Intr + 109172 109248   77  1  2   64  101    56 0.952   2.81
 4.03 Intr + 112009 112061   53  1  2   95  103    37 0.981   4.45
 4.04 Intr + 116410 116531  122  2  2   48   98   111 0.966   8.31
 4.05 Intr + 118404 118540  137  2  2   83   94   -17 0.600  -2.23
 4.06 Intr + 121719 121783   65  0  2   92   78    41 0.651   1.86
 4.07 Intr + 124382 124516  135  0  0   62   97    63 0.970   5.14
 4.08 Intr + 125184 125329  146  1  2   60   99   123 0.999  10.60
 4.09 Intr + 126836 126962  127  1  1   84   64   139 0.995  11.35
 4.10 Intr + 129733 129896  164  2  2   94   93    13 0.973   2.09
 4.11 Intr + 131438 131572  135  1  0   39   78   102 0.965   5.06
 4.12 Intr + 131904 131965   62  2  2   74  113    47 0.905   3.33
 4.13 Intr + 134293 134426  134  1  2   40   96   133 0.907   9.59
 4.14 Intr + 136980 137116  137  1  2   45   34   205 0.909  11.09
 4.15 Term + 169990 170130  141  0  0   82   36   111 0.744   3.23
 4.16 PlyA + 171235 171240    6                               1.05

 5.00 Prom + 179597 179636   40                              -8.26
 5.01 Init + 181836 181888   53  2  2   56   84    64 0.729   3.43
 5.02 Term + 187950 188058  109  0  1   92   45   116 0.829   5.68
 5.03 PlyA + 190672 190677    6                               1.05

 6.04 PlyA - 190855 190850    6                               1.05
 6.03 Term - 193952 193937   16  1  1  110   32    12 0.020  -4.49
 6.02 Intr - 206450 206357   94  0  1   74  101    75 0.373   6.42
 6.01 Init - 210654 210489  166  0  1   51   63   145 0.659   7.20
 6.00 Prom - 235302 235263   40                              -1.46


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:202165942_202403057|GENSCAN_predicted_peptide_1|547_aa
MASIAPLRVPAASERLLPSASLLREVVPALQKELLADGGARYGFSLTTFSPSDKLVRIEY
ALAAVAGGALSVGIKAANGVVLATEKKQKFILYDERSVDKVEPITKHIDPEPRSMTLDSP
RASRTEHIQTPEADIVQKVGRDYDVHHLHRGLLGYGPESPERLSAVYTSLLPREREGKAE
PRLFSQETSANISHERDLINEAKRKEKPKKDKTKGPKSEREGKVYGQAEAAIGKSKDSKA
KKKLEKKTRPQRKRTQKERNLEIAAELSGPDVSYEETEDTSNRGSFASDSFVEDPWLSPK
YDAQESQVSLDGRSSPSQIATVTGNMESKEERRCEDPSKALLTKREQEKASWDRLRAERA
EMRWLEVEKKRREQEEQRQLQQEQLERAKKMEEELELEQQRRTEEIRLRKQRLQEEQQRQ
EEEERKQQLRLKAAQERARQQQEEFRRKLRELQRKKQQEEAERAEAEKQRQEELEMQLEE
EQKHLMEMAEEERLEYQRRKQEAEEKARLEAEERRQKEEEAARLALEEATKQAQEQARYW
IFGQQLP

>gi568815596f:202165942_202403057|GENSCAN_predicted_CDS_1|1644_bp
atggcttcaatagcgccgctccgggtccccgcggcgtcggagaggcttctgcctagcgcc
tctctgctgcgcgaggtcgtcccggccttacaaaaggagctcctcgctgatggcggagcg
cggtacggcttttcgctgactacattcagcccgtctgataaacttgtccggattgaatat
gctttggctgctgtagctggaggagccctgtcagtgggaattaaagcggcaaatggtgtg
gtattagcaaccgagaaaaaacagaaattcattctgtatgatgagcgaagtgtagacaaa
gtggaaccaattaccaagcacatagacccagagccaaggagtatgacccttgactctccc
agggcttcccggactgagcacatccagaccccagaagcagatattgtgcaaaaagtgggc
agagattatgatgtacaccacctacacagaggacttctgggatacgggcctgagtcaccc
gagaggttgagtgctgtgtatacatctcttcttccaagagaaagagaagggaaggctgaa
ccaagactgtttagccaggagacatcagccaacatcagtcatgagagggatttgattaac
gaggccaagagaaaggaaaaacccaagaaagacaaaaccaaaggacccaaaagcgagaga
gaaggaaaggtctacgggcaagcagaggctgccattggaaagtcaaaggactcaaaggct
aaaaaaaaattagaaaaaaaaacaagaccccaaaggaaaaggacacagaaggaaagaaat
ctggagatagcggcagagctgagcgggcctgatgtcagctatgaggaaacagaagacacc
tcaaatagaggttcctttgcctcagactcctttgtagaggacccttggctttctcccaaa
tatgatgcccaggaaagccaagtttctctagatggaagatcatcaccctctcagattgca
actgtcactggcaacatggaatctaaagaagagagaagatgtgaggacccttccaaggcc
ctcctcactaagagggagcaggagaaggcttcctgggacaggcttcgagcagaaagagcc
gagatgaggtggctggaggtggagaagaagagaagggagcaggaagagcaaaggcagctc
cagcaggagcagctggagagagcaaaaaagatggaggaggagctggagctggagcagcag
agacgtacagaagagatccgcttgaggaaacagagactccaagaagaacagcagcggcag
gaggaggaggagagaaagcagcagctccggttgaaagcagcccaggagagagcccggcaa
cagcaagaggagtttcggaggaaactgcgagaactacagagaaaaaagcagcaggaggaa
gccgagagggccgaggcagagaagcaaaggcaagaggaattggaaatgcagttagaagaa
gaacaaaaacacctgatggaaatggctgaagaggaacgactggagtaccagcggcggaaa
caggaagcagaagagaaggctcggctggaggcagaggagaggaggcaaaaagaagaggaa
gcagcaagactggctctggaagaagccacgaaacaagcccaggaacaagccaggtactgg
atatttgggcaacagttgccatag

>gi568815596f:202165942_202403057|GENSCAN_predicted_peptide_2|228_aa
MRREPNLGSQRWRVFKEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLK
ESYCQRQGVPMNSLRFLFEGQRIADNHTPKEALPYTDAPTAYSELYHPSFVHPRGCHSPH
HVGRFPGASLYLPMAQSVAVGSLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA
TAGNILPPPPGCPPSAAQLAVMQAANVLVTQWKGNFFMGESDGGYTIW

>gi568815596f:202165942_202403057|GENSCAN_predicted_CDS_2|687_bp
atgaggagagaacctaatcttggcagccaaaggtggagagttttcaaggaggcaaaacct
tcaactgaggacttgggggataagaaggaaggtgaatatattaaactcaaagtcattgga
caggatagcagtgagattcacttcaaagtgaaaatgacaacacatctcaagaaactcaaa
gaatcatactgtcaaagacagggtgttccaatgaattcactcaggtttctctttgagggt
cagagaattgctgataatcatactccaaaagaagctctaccctatactgatgctccgact
gcctactcagagctctatcatccaagctttgtgcaccccaggggctgccacagtccccac
catgtcggccgctttcctggagcctctctgtatcttcccatggcccagtctgtggctgtt
gggtctttaggttccacaatccccatggcttattatccagttggtcccatctatccacct
ggctccacagtgctggtggaaggcgggtatgatgcaggtgccagatttggagctggggct
actgctggcaacattcttcctccacctcctggatgccctcccagtgctgctcagcttgca
gtcatgcaggcagccaatgtcctcgtaactcagtggaaggggaacttcttcatgggtgaa
tcagatggtggctacaccatctggtga

>gi568815596f:202165942_202403057|GENSCAN_predicted_peptide_3|159_aa
MMTVASPGGLRTAAASAQHRGCSNFRYASRHFRFAQGGGRERREERQGGKWVGEQPRGGA
GCGAALPVVARVNGSFVSSFKDQVLRISTRAIPQEQRAAAALCALLALPTNIMLQFLLGF
TLGNVVGMYLAQNYDIPNLAKKLEEIKKDLDAKKKPPTS

>gi568815596f:202165942_202403057|GENSCAN_predicted_CDS_3|480_bp
atgatgacggtggcttcacccgggggtctccgcacagcagcggcctcggcacaacaccgc
ggctgcagtaacttccgctacgcctcgcgtcacttccgcttcgcgcagggaggagggaga
gagagaagagaggaaagacaaggcgggaaatgggtgggggagcagccaaggggaggggca
ggctgtggagctgctttgccggtggtcgcgcgggtgaacggcagttttgtcagctccttc
aaggaccaggtcctgcgcatcagtactagggccatcccccaggagcaaagagctgcagca
gccctttgcgccctcctcgccctccccaccaacatcatgctccaattcctgcttggattt
acattgggcaacgtggttggaatgtatctggctcagaactatgacataccaaacctggct
aaaaaacttgaagaaattaaaaaggacttggatgccaagaagaaaccccctacttcatga

>gi568815596f:202165942_202403057|GENSCAN_predicted_peptide_4|559_aa
MLVLFETSVGYAIFKVLNEKKLQEVDSLWKEFETPEKANKIVKLKHFEKFQDTAEALAAF
TALMEGKINKQLKKVLKKIVKEAHEPLAVADAKLGGVIKEKLNLSCIHSPVVNELMRGIR
SQMDGLIPGVEPREMAAMCLGLAHSLSRYRLKFSADKVDTMIVQAISLLDDLDKELNNYI
MRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKNYASAKLSELLPEEVEAEVKAAAEI
SMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIA
HAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISR
MLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKALAKTEKYE
HKSEVKTYDPSGDSTLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVKVEEEEEEKVAEEE
ETSVKKKKKRGKKKHIKEEPLSEEEPCTSTAIAEAHGEAQTSLGMKPWQSDKACFLQATY
SAMNERDDVTTLFRHNGFI

>gi568815596f:202165942_202403057|GENSCAN_predicted_CDS_4|1680_bp
atgttggtgctgtttgaaacgtctgtgggttacgccatctttaaggttctaaatgagaag
aaacttcaagaggttgatagtttatggaaagaatttgaaactccagagaaagcaaacaaa
atagtaaagctaaaacattttgagaaatttcaggatacagcagaagcattagcagcattc
acagctctgatggagggcaaaatcaataagcagctgaaaaaagttctgaagaaaatagta
aaagaagcccatgaaccgctggcagtagctgatgctaaactaggaggggtcataaaggaa
aagctgaatctcagttgtatccatagtcctgttgttaatgaacttatgagaggaattcgt
tcacaaatggatggattaatccctggggtagaaccacgtgaaatggcagctatgtgtctt
ggattggctcacagcctgtctcgatatagattgaagtttagcgctgataaagtagacaca
atgattgttcaggcaatttccttgttagatgacttggataaagaactaaacaactacatt
atgcgatgtagagaatggtatggctggcatttccctgaattaggaaaaattatttcagat
aatttaacatactgcaagtgtttacagaaagttggcgataggaagaactatgcctctgcc
aagctttctgagttgctgccagaagaagttgaagcagaagtgaaagcagctgcagagata
tcaatgggaacagaggtttcagaagaagatatttgcaatattctgcatctttgcacccag
gtgattgaaatctctgaatatcgaacccagctctatgaatatctacaaaatcgaatgatg
gccattgcacccaatgttacagtcatggttggggaattagttggagcacggcttattgct
catgcaggttctcttttaaatttggccaagcatgcagcttctaccgttcagattcttgga
gctgaaaaggcacttttcagagccctcaaatctagacgggatacccctaagtatggtctc
atttatcatgcttcactcgtgggccagacaagtcccaaacacaaaggaaagatttctcga
atgctggcagccaaaaccgttttggctatccgttatgatgcttttggtgaggattcaagt
tctgcaatgggagttgagaacagagccaaattagaggccaggttgagaactttggaagac
agagggataagaaaaataagtggaacaggaaaagcattagcaaaaacagaaaaatatgaa
cacaaaagtgaagtgaagacttacgatccttctggtgactccacacttccaacctgttct
aaaaaacgcaaaatagaacaggtagataaagaggatgaaattactgaaaagaaagccaaa
aaagccaagattaaagttaaagttgaagaagaggaagaagaaaaagtggcagaagaagaa
gaaacatctgtgaagaagaagaagaaaaggggtaaaaagaaacacattaaggaagaacca
ctttctgaggaagaaccatgtaccagcacagcaattgctgaagctcatggggaagcacag
acatccttgggtatgaagccttggcaatcagacaaggcttgtttcctgcaggccacttac
tcagccatgaatgagagagatgatgtcaccactctcttccgccataatggcttcatctag

>gi568815596f:202165942_202403057|GENSCAN_predicted_peptide_5|53_aa
MTAQTEVQSEGQYRPPDIPNAEILCDIETSFGTLMDSLPLIIRFIIVVAVTVA

>gi568815596f:202165942_202403057|GENSCAN_predicted_CDS_5|162_bp
atgacagcacaaactgaggtccagtctgaggggcagtatcgaccaccagacatccctaat
gctgaaatcctttgtgatatagagaccagctttggcactctaatggattctttaccattg
attatccgtttcatcatcgtggttgctgtaactgttgcatag

>gi568815596f:202165942_202403057|GENSCAN_predicted_peptide_6|91_aa
MAPVSESQPPEEAAAAAAAAAAAAAAAASFSRSSGLLTELGRRGPRAGGGGRADEVGTWL
FTHSEKEHQRTELRLGKKPVHDKRQTMLKPA

>gi568815596f:202165942_202403057|GENSCAN_predicted_CDS_6|276_bp
atggctcctgtgagcgaatcacaaccccccgaggaagccgctgctgctgccgccgccgcc
gccgccgccgccgccgccgccgcctcgttctcccgcagctctgggctcctgacggaactc
gggcgtcgcggaccgagggcggggggcggcgggagggcggatgaagttgggacatggctg
ttcactcacagtgagaaagaacatcaaagaacagaattaagacttggcaagaaacctgtc
cacgacaaaaggcagacaatgctaaagccagcataa