GENSCAN 1.0	Date run:  5-Nov-116	Time: 17:59:02

Sequence gi568815594r:139598147_139798554 : 200408 bp : 43.34% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   9080   9119   40                              -1.56
 1.01 Init +  27672  27721   50  2  2   38   96    50 0.703   1.25
 1.02 Intr +  27841  28055  215  1  2   88   77    99 0.523   7.16
 1.03 Term +  35885  36210  326  0  2   80   37   167 0.148   5.73
 1.04 PlyA +  36935  36940    6                              -0.45

 2.00 Prom +  37629  37668   40                              -4.46
 2.01 Init +  42858  42909   52  2  1  110   94    18 0.170   5.96
 2.02 Intr +  45343  45424   82  2  1  113   88    20 0.171   3.20
 2.03 Intr +  51879  52044  166  0  1   24   93    81 0.039   2.16
 2.04 Term +  58623  58769  147  2  0  119   53    10 0.093  -1.50
 2.05 PlyA +  61515  61520    6                              -0.45

 3.00 Prom +  62852  62891   40                              -6.06
 3.01 Init +  67874  67931   58  1  1   87   69   110 0.925   8.48
 3.02 Intr +  80397  80496  100  1  1  109   98    44 0.110   6.67
 3.03 Term +  89701  89728   28  1  1  125   40    10 0.007  -2.55
 3.04 PlyA +  89910  89915    6                               1.05

 4.03 PlyA -  90391  90386    6                               1.05
 4.02 Term -  98010  97945   66  0  0  118   39    88 0.785   4.84
 4.01 Init -  98542  98381  162  1  0   21    8   169 0.406   1.93
 4.00 Prom -  99719  99680   40                              -4.16

 5.02 PlyA -  99958  99953    6                              -0.45
 5.01 Sngl - 100408  99998  411  1  0   79   48   375 0.971  28.89
 5.00 Prom - 104592 104553   40                              -2.76

 6.03 PlyA - 104782 104777    6                               1.05
 6.02 Term - 106354 106237  118  0  1    9   38   101 0.143  -4.79
 6.01 Init - 110461 109569  893  1  2   39   53   256 0.304  11.04
 6.00 Prom - 118030 117991   40                               0.24

 7.07 PlyA - 118212 118207    6                               1.05
 7.06 Term - 119571 119410  162  0  0   71   43    73 0.418  -0.96
 7.05 Intr - 120530 120370  161  0  2   56   94   113 0.708   8.41
 7.04 Intr - 122177 121188  990  0  0   92   19   340 0.768  18.33
 7.03 Intr - 127689 127605   85  0  1   87  100    49 0.606   5.39
 7.02 Intr - 132521 132270  252  2  0  105   92   365 0.755  36.23
 7.01 Init - 137814 137734   81  0  0   53  -15   148 0.587  -0.03
 7.00 Prom - 139426 139387   40                              -5.26

 8.00 Prom + 141182 141221   40                              -4.66
 8.01 Init + 165165 165309  145  2  1   16   84   195 0.716  12.18
 8.02 Intr + 196636 196764  129  2  0   36  116    25 0.018   0.77
 8.03 Intr + 197774 197827   54  0  0  106   91    13 0.021   2.35

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  29755  29825   71  2  2   77   39   102 0.867   2.30
S.002 Term +  68060  68220  161  0  2  109   38    35 0.801  -1.30


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594r:139598147_139798554|GENSCAN_predicted_peptide_1|196_aa
MPKIGLSECQYLLQPIRLWVSHRRAEVYSMNVCVVYEKMVTITNLQGNANQNQNEILLTP
VKVAIIKKTKYNRAGEDVEKGEHSLYTVAPHPPVISVPQPVTLPSTQPASLYPSSCMDAP
AILVAQDCANNHQYAFTSSAPPMPLLTLSYQSDILNFSFSYLHILFLSLLCRLHLTCLLL
KLPCNAYYAKAKKQVD

>gi568815594r:139598147_139798554|GENSCAN_predicted_CDS_1|591_bp
atgcctaaaattggcttgtctgagtgccaatatctgctgcagcccatcagattatgggtt
tctcataggagagctgaagtctactcaatgaatgtctgtgtggtatatgaaaaaatggtc
accatcactaatcttcaaggaaatgcaaatcaaaaccaaaatgagatattactcactcca
gttaaagtggctattatcaaaaagacaaaatataacagagctggtgaggatgtggagaaa
ggggaacactccttgtacactgttgcccctcatcctcctgtcatttcggtccctcaaccg
gtcactttgccatccactcaacctgcttctctgtacccttcttcatgcatggatgcccct
gccattcttgttgcacaggattgcgccaataaccaccagtatgcttttacctcttctgct
cccccaatgccccttctcacactctcataccagtccgacatcctcaacttcagtttctct
tatctacacatacttttcctgtcacttctatgccgactccatctcacgtgcctgctcttg
aaacttccatgcaacgcttattacgccaaagcaaagaagcaagtagattag

>gi568815594r:139598147_139798554|GENSCAN_predicted_peptide_2|148_aa
MGPVQLWRALSKETRLAAPCATSLHDTERGHLCSQMLLSVFVTKALEKSQRMREFYELQE
WSALEDIQRRVNRERTAFHKEVDTGDVLVINRDLQTRSIQFATGMPNVKCPFLTLLHGMY
VSGAASVFGFRLALSGSGLTVKSWYFYI

>gi568815594r:139598147_139798554|GENSCAN_predicted_CDS_2|447_bp
atggggccagtgcagctgtggagagctctgagcaaagaaacaaggttggcagcaccctgt
gcaaccagcttgcatgacactgagcgggggcacctctgctcacagatgttgctgtctgtc
tttgtcaccaaggcgttagaaaaatctcagagaatgagggagttctatgaactccaggaa
tggtctgctttggaggacatccaaaggagagtgaacagagaaaggacagcttttcacaaa
gaagtggacactggtgatgttctggtcatcaatagagacctccaaaccagatctatccag
tttgccacagggatgccaaacgtaaagtgtccttttctgacccttctccatggaatgtac
gtctctggggcagcgtctgtgtttggcttccgtctagctctgagtggatcaggactaacg
gttaaatcctggtatttttacatttga

>gi568815594r:139598147_139798554|GENSCAN_predicted_peptide_3|61_aa
MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQRGLTDDS
L

>gi568815594r:139598147_139798554|GENSCAN_predicted_CDS_3|186_bp
atggccgggaactcgatcctgctggctgctgtctctattctctcggcctgtcagcaaagt
tattttgctttgcaagttggaaaggcaagattaaaatacaaagttacgcccccagcagtc
actgggtcaccagagtttgagagagtatttcgggcacagagaggacttacagatgacagt
ctctag

>gi568815594r:139598147_139798554|GENSCAN_predicted_peptide_4|75_aa
MTLTGFTTEPIKEIMKEIVAVAKNVGDEGSQDMNLGEIQELIDTTPDELTEDDLLTQREN
DEDEDLYDGPLPLNK

>gi568815594r:139598147_139798554|GENSCAN_predicted_CDS_4|228_bp
atgacactcacaggatttacaacagagccaatcaaggaaatcatgaaagagatagtggct
gtggcaaagaatgtgggggatgaagggtctcaagatatgaatcttggagaaattcaagag
ctaatagacaccacgccagatgaattaacagaagatgacttgcttactcaacgtgaaaat
gatgaggatgaagacctttatgatggtccacttccacttaataaatag

>gi568815594r:139598147_139798554|GENSCAN_predicted_peptide_5|136_aa
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
LLVRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
MPKDIQLAHSIRGERA

>gi568815594r:139598147_139798554|GENSCAN_predicted_CDS_5|411_bp
atggctcgtacaaagcagactgcccgcaaatcgaccggtggtaaagcacccaggaagcaa
ctggctacaaaagccgctcgcaagagtgcgccctctactggaggggtgaagaaacctcat
cgttacaggcctggtactgtggcgctccgtgaaattagacgttatcagaagtccactgaa
cttctggttcgcaaacttcccttccagcgtctggtgcgagaaattgctcaggactttaaa
acagatctgcgcttccagagcgcagctatcggtgctttgcaggaggcaagtgaggcctat
ctggttggcctttttgaagacaccaacctgtgtgctatccatgccaaacgtgtaacaatt
atgccaaaagacatccagctagcacacagcatacgtggagaacgtgcttaa

>gi568815594r:139598147_139798554|GENSCAN_predicted_peptide_6|336_aa
MTFFTELEKTTLKFIWNQKRAHITKSILSQKNKAGGITIPDFKLYYKATVNKTAWYWYQK
RDIDQWNRTEPSEIMPHIYNHLIFDKPDKNKQWGKDSLFNKWCWENWLAICRKLKLDPFL
TPYTKINSRWNKDLRVRPKTIKTLEENLGNIIQDIGMGKDKDFMSKTPKAMATKDKMDKR
DLIKLKSFCTAKETTIRVNRQPTEWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKK
WAKDMNRHFSKEDIYAAKKYMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIQKSGNNSFC
LKLSIKREAVRVAGYVSSPRNGQHTGQAAVSLHNRS

>gi568815594r:139598147_139798554|GENSCAN_predicted_CDS_6|1011_bp
atgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaaga
gcccacatcaccaagtcaatcctaagccaaaagaacaaagccggaggcatcacgatacct
gacttcaaactatactacaaggctacagtcaacaaaacagcatggtactggtaccaaaaa
agagatatagatcaatggaacagaacagagccctcagaaataatgccgcatatctacaac
catctgatctttgataaacctgacaaaaacaagcaatggggaaaggattccctatttaat
aaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttcctt
acaccttatacaaaaattaattcaagatggaataaagacttacgtgttagacctaaaacc
ataaaaaccctagaagaaaacctaggcaatatcattcaggacataggcatgggcaaggac
aaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagacaaaatggacaaacgg
gatctaattaaactcaagagcttctgcacagcaaaagaaactaccatcagagtgaacagg
caacctacagaatgggagaaaatttttgcaacctactcatctgacaaagggctaatatcc
agaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaag
tgggcgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaatac
atgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgaga
taccatctcacaccagttagaatggcgatcattcaaaagtcaggaaacaacagcttctgt
ctgaaactttccatcaagagagaagcagtcagagtggcaggatatgtcagtagtcctcgg
aacggccagcacacgggtcaggctgctgtgtccctacacaaccggtcatga

>gi568815594r:139598147_139798554|GENSCAN_predicted_peptide_7|576_aa
MRPLEHTAASRAPERRARAEDLQGPSREQHPVGLPRTTGPMQSSVPPGSGGMVSGASPAG
PGFLGSQPQAAIMKQMLIDQRAQLIEQQKQQFLREQRQQQQQQQQQILAEQQLQQSHLPR
QHLQPQRNPYPVQQVNQFQGSPQDIAAVRSQAALQSMRTSRLMAQNAGMMGIGPSQNPGT
MATAAAQSEMGLAPYSTTPTSQPGMYNMSTGMTQMLQHPNQSGMSITHNQAQGPRQPASG
QGVGMVSGFGQSMLVNSAITQQHPQMKGPVGQALPRPQAPPRLQSLMGTVQQGAQSWQQR
SLQGMPGRTSGELGPFNNGASYPLQAGQPRLTKQHFPQGLSQSVVDANTGTVRTLNPAAM
GRQMMPSLPGQQGTSQARPMVMSGLSQGVPGMPAFSQPPAQQQIPSGSFAPSSQSQAYER
NAPQDVSYNYSGDGAGGSFPGLPDGADLVDSIIKGGPGDEWMQELDELFGIAKALLSQGE
QAEFGAGSIRQSWDGFPLLVPLVAVPPGGAGACWRPIQNPYIQADHYGRVGACGVGLATL
SPEKASCHGKLGAEVFLERRRQANIAFDLLSAYPGL

>gi568815594r:139598147_139798554|GENSCAN_predicted_CDS_7|1731_bp
atgcgcccgctggagcacaccgcagcctcgcgggctcccgagcggcgcgcgcgggccgag
gacctccagggcccctcgcgggagcagcatccagttggacttccccgaaccacaggcccc
atgcagtcctccgtgcccccaggctcaggtggcatggtctcaggagccagtcccgcaggc
cccggcttcctgggcagccagccccaagcagccatcatgaagcagatgctcattgatcag
cgggcccagttgatagagcagcagaagcaacagttcctgcgggagcaaaggcagcagcag
cagcagcagcagcagcagattttggcggaacagcagttgcagcaatcacatctaccccgg
cagcacctccagccacagcggaatccatacccagtgcagcaggtcaatcagtttcaaggt
tctccccaggatatagcagccgtaagaagccaagcagccctccagagcatgcgaacgtca
cggctgatggcacagaacgcaggcatgatgggaataggaccctcccagaaccctgggacg
atggccaccgcagctgcgcagtcggagatgggactggccccttatagcaccacgcctacc
agccaaccaggaatgtacaatatgagcacaggcatgacccaaatgttgcagcatccaaac
caaagtggcatgagcatcacacataaccaagcccagggaccgaggcaacctgcctctggg
cagggggttggaatggtgagtggctttggtcagagcatgctggtgaactcagccattacc
cagcaacatccacagatgaaagggccagtaggccaggccttgcctaggccccaagcccct
ccaaggctgcagagccttatgggaacagtccagcaaggagcacaaagctggcaacagagg
agcttgcagggcatgcctgggaggactagtggagaattgggaccattcaacaatggcgcc
agctaccctcttcaagctgggcagccgagactgaccaagcagcacttcccacagggactg
agccagtcagtcgtggatgctaacacgggcacagtgaggaccctcaacccagctgccatg
ggtcggcagatgatgccatcgctcccggggcagcaaggcaccagccaggcgaggccaatg
gtcatgtctggcctgagccagggagtcccaggcatgccagcgttcagccagcccccagca
cagcagcagatacccagtggcagctttgctccaagcagccagagccaagcctatgagcgg
aatgcccctcaggacgtgtcatacaattacagtggcgacggagctgggggttccttccct
ggcctcccggacggtgcagaccttgtggactccatcatcaaaggcgggccaggggacgag
tggatgcaggagcttgatgaattgtttggaattgcaaaggctctgctgtcacaaggagag
caggctgagtttggagcagggtccatccggcagtcctgggacggcttccctctgctggtg
cccctggtggcagtccctccaggtggggctggagcctgctggcgcccaatacaaaaccca
tacatccaggcagatcactacggaagagtcggagcctgtggggttggactggccacactc
agtcctgagaaggcgagttgccatggaaagctgggggcagaggtgtttttggagaggagg
cggcaggcaaacattgcctttgacttgctctccgcgtacccggggttgtag

>gi568815594r:139598147_139798554|GENSCAN_predicted_peptide_8|110_aa
MTKALGKAEEESGFCENEQGSCSESAAEGAICLSNEKYGAKEAHGIQTYDTANSLCSSVE
LAKIVSVFVLLNRLGSGAKRLPVLKASFLNEDRLSHLPHYKCDCIFFSTX

>gi568815594r:139598147_139798554|GENSCAN_predicted_CDS_8|330_bp
atgactaaggccctaggcaaagctgaagaggagtctggattctgtgagaatgaacaaggc
agctgctcggagtcggctgctgagggggccatctgtttaagcaacgagaagtacggagct
aaagaggcacacggtattcaaacatatgacactgccaacagtctttgctcctctgtggag
ctggccaagattgtttctgtcttcgtactgcttaacagactagggtcaggtgccaagagg
ttgcctgtcctgaaagcttcttttctgaatgaagacagactttcccatttaccccactat
aagtgtgactgtatcttctttagcacagnn