GENSCAN 1.0	Date run:  8-Nov-116	Time: 11:16:15

Sequence gi568815592f:35705671_35914780 : 209110 bp : 44.96% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   7043   7052   10  1  1  103   91     2 0.374   2.56
 1.02 Intr +  25818  25915   98  1  2   75   73    49 0.000   1.83
 1.03 Intr +  29793  29939  147  2  0   68   96    30 0.002   2.23
 1.04 Intr +  31424  31601  178  1  1   24   86   223 0.006  15.19
 1.05 Intr +  32357  32502  146  0  2   18   94   142 0.962   7.80
 1.06 Intr +  32714  32848  135  1  0   85   99   175 0.997  19.06
 1.07 Intr +  41591  41764  174  1  0   96   51   144 0.992  11.64
 1.08 Intr +  41906  41977   72  1  0  111   94   123 0.999  14.80
 1.09 Term +  42868  43200  333  0  0   87   38   322 0.916  21.71
 1.10 PlyA +  43215  43220    6                               1.05

 2.00 Prom +  55940  55979   40                              -5.26
 2.01 Sngl +  60157  60519  363  0  0   57   41   231 0.843   9.97
 2.02 PlyA +  61203  61208    6                               1.05

 3.00 Prom +  67070  67109   40                              -6.36
 3.01 Init +  68028  68108   81  2  0   80   65   101 0.550   6.01
 3.02 Intr +  70826  71032  207  1  0  137  105   101 0.851  15.97
 3.03 Intr +  71789  71911  123  1  0   80   94    40 0.947   4.58
 3.04 Intr +  73450  73542   93  0  0   65   42    68 0.190   0.06
 3.05 Intr +  81328  81450  123  0  0   84   94   156 0.565  16.58
 3.06 Term +  82924  82977   54  0  0  108   41    17 0.443  -3.44
 3.07 PlyA +  83609  83614    6                               1.05

 4.04 PlyA -  84831  84826    6                               1.05
 4.03 Term -  89607  89476  132  0  0  104   53   221 0.893  18.29
 4.02 Intr -  90183  90061  123  0  0   55   98    93 0.994   7.78
 4.01 Init -  91618  91535   84  1  0  103   99   162 0.999  17.67
 4.00 Prom -  93441  93402   40                              -1.66

 5.00 Prom +  99145  99184   40                              -7.16
 5.01 Init + 100001 100412  412  1  1   97  102   607 0.972  59.68
 5.02 Intr + 108876 109112  237  1  0  116   46   414 0.916  37.59
 5.03 Term + 109948 110006   59  2  2  111   41    22 0.865  -2.35
 5.04 PlyA + 111164 111169    6                               1.05

 6.02 PlyA - 111194 111189    6                               1.05
 6.01 Sngl - 123223 121895 1329  1  0   39   47   194 0.372   6.52
 6.00 Prom - 125740 125701   40                              -5.66

 7.14 PlyA - 126586 126581    6                               1.05
 7.13 Term - 129818 129634  185  0  2  113   46   167 0.999  12.71
 7.12 Intr - 132759 132667   93  1  0   32   98    72 0.827   2.54
 7.11 Intr - 136934 136865   70  2  1  121  113    56 0.998  10.15
 7.10 Intr - 144688 144629   60  1  0   84   92    21 0.452   1.03
 7.09 Intr - 151698 151591  108  0  0   70   50    57 0.309   0.58
 7.08 Intr - 163440 163340  101  1  2   77  103    26 0.526   2.83
 7.07 Intr - 164231 163812  420  0  0   88   77   237 0.558  16.52
 7.06 Intr - 164824 164611  214  1  1   57    3   241 0.795  10.79
 7.05 Intr - 165289 165264   26  2  2   93  100     1 0.776  -0.46
 7.04 Intr - 167058 166893  166  0  1   81   45   111 0.719   5.63
 7.03 Intr - 182441 182354   88  1  1   86   70   106 0.962   8.57
 7.02 Intr - 183253 183145  109  2  1   96   89   -31 0.869  -2.86
 7.01 Intr - 185343 185225  119  2  2   42  115   117 0.764   9.91

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  21912  21813  100  2  1   84   50    66 0.805  -0.00
S.002 Intr -  22590  22535   56  0  2   95   93    87 0.882   7.68
S.003 Init +  31439  31601  163  1  1   88   86   191 0.887  18.84


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:35705671_35914780|GENSCAN_predicted_peptide_1|430_aa
MQGVALTSVTSRGAWPLSIVSWCPGPLRIRTWGEDEGVLGQGSEWAGLAGRSIIGDAVSL
PPSILGAAQDPEPSVPVLPKRDQGQGNTEDMGKSIPQYLGQLDIRKSVVSLATGAGAIYL
LYKAIKAGIKCKPPLCSNSPICIARLAVERERHGRDSGELRRLLNSLECKQDEYAKSMIL
HSITRCVYLLEAEASACTTDDIVLLGYMLDDKDNSVKTQALNTLKAFSGIRKFRLKIQEH
SIKVLELISTIWDTELHIAGLRLLNNLPLPDYVHPQLRRVMPALMEILQSDYILAQVQAV
RLLSYLAQKNDLLYDILNCQVHSNFLNLFQPTQSGSLLYEVLVFAERLSEGRNAPHYHVV
KWHYNEQSLHESLFGEESRLADRLLALVIHPEEDVQIQACKVIVSLQYPQDLRARPSSCQ
PSRSYFKNTE

>gi568815592f:35705671_35914780|GENSCAN_predicted_CDS_1|1293_bp
atgcagggtgttgccttgacatcagtgacgtcgcgaggggcgtggcctctctccatcgtc
tcctggtgccctgggcccctccgcatccgaacctggggggaggatgagggtgtactgggc
caaggctctgagtgggcaggcctggctggccgcagcatcattggagatgctgtttcccta
cctccttccatcctgggtgcagcccaggacccagagccttctgtcccagttctcccaaaa
agggatcagggccagggcaacactgaagacatgggcaagagcatcccccaatacctgggg
caactggacatccgcaaaagcgtagtcagcctggccacaggcgccggggcgatctacctg
ctctacaaggccatcaaggctggcataaaatgcaaaccacccctctgtagcaactcaccc
atctgcatcgcccgcctggcagtcgagcgagagcggcacgggcgggactcaggtgagctc
cggaggctcctcaactctttggagtgcaaacaggatgagtatgccaagagcatgatcctg
cacagtatcactcgctgtgtgtacttgctggaggctgaggcctctgcttgtactacggat
gacatcgtgttgctgggctacatgctggatgacaaggacaacagtgtcaaaacccaagct
ctgaatacacttaaagctttctctggcatcagaaaattcaggctcaaaatccaggaacac
tccatcaaagtactcgaactgatctccaccatctgggacacggaactgcacattgcgggc
ctcagactcctcaacaaccttccactgcccgactatgtgcatccacagctgcgacgggtg
atgcctgccttgatggagatcctgcagtcagactacatcctggcacaggtgcaagccgta
cgactgctgagctacctggcacagaagaatgaccttctctatgacattctcaactgccag
gttcactccaacttcctaaacctgttccagcccacacagtcagggagtctcctgtatgag
gtactggtgtttgctgagcggctgagtgagggccggaacgcaccccactaccacgtggtg
aaatggcattacaacgaacagtccctgcatgaatccctctttggggaagagtcccgactg
gcagaccgactacttgccctggtcatccaccctgaggaagatgttcagatccaggcctgc
aaggtcattgtcagcctgcagtatccccaggacttgagagcccggccctcctcctgccag
cccagtcgttcctactttaaaaacacggaataa

>gi568815592f:35705671_35914780|GENSCAN_predicted_peptide_2|120_aa
MPWQPAPFPHRLPGTRRTCQPSELRGAVQAEPLPEPLLHVLGLSFPLQTCRPILRCPPGL
MKPLVVFVHGGPGALASLRKMATHTFLQESYFMMKGRAQIHSMVNSLKITLKKETWDQWR

>gi568815592f:35705671_35914780|GENSCAN_predicted_CDS_2|363_bp
atgccctggcagcccgcccctttcccacaccgcctccccggcacacgccgcacctgtcag
ccctctgagctccgaggtgcggtgcaggctgagccactgcctgagccgctgctccacgtc
ctgggccttagcttcccgctgcagacctgccggccgattcttcgctgccctcccggtctc
atgaagccgctggtcgtgtttgtccacggcggtcccggcgcgctggcatccttgagaaag
atggctacacacacctttctgcaggagagttacttcatgatgaaaggaagagcccagatt
cacagtatggtgaactcactgaaaattacattaaagaaggaaacatgggaccagtggaga
taa

>gi568815592f:35705671_35914780|GENSCAN_predicted_peptide_3|226_aa
MLTGQAAQGFPALETLVILFLLPRNAEASSPSTSLLRRGGLGRRVTWPGKRFYPAAPRNP
AAALPPRPMAAALALVAGVLSGAVLPLWSALPQYKKKITDRCFHHSECYSGCCLMDLDSG
GAFCAPRARITMICLPQSSQQPYEGGYYYCPHLTDEETELERFIDLLKELKESCIRNQDC
ETGCCQRAPDNCESHCAEKGSEGSLCQTQVGKRVEQLVQGHTVGKC

>gi568815592f:35705671_35914780|GENSCAN_predicted_CDS_3|681_bp
atgctcacaggtcaggcagctcagggattcccggcgctggagaccctggtgatcttgttc
ctactcccccgcaatgcagaggcgtcctcgccctccacgtccctcctccgccggggtggc
ctggggcgccgggtcacgtggccggggaagaggttttatcccgcggcccctcggaacccc
gccgctgctctgccgcccaggcccatggccgcagccctggcgctcgtggcgggggtcctg
tcgggggcggtgctgcccctctggagcgcgcttccgcaatataaaaagaaaatcacagac
aggtgcttccaccactctgagtgctacagtggctgctgcctcatggacttggactccggt
ggagccttctgtgcccccagggccagaataaccatgatctgcttgccccagtcctcacaa
caaccctatgaggggggttactattactgtccccatttgacagatgaggaaaccgagctg
gagaggttcattgacttgctgaaggagctcaaggagtcttgcatccggaaccaggactgc
gagactggctgctgccaacgtgctccagacaattgcgagtcgcactgcgcggagaagggg
tccgagggcagtctgtgtcaaacgcaggtagggaaacgggttgagcaacttgttcaaggt
cacacagttggaaagtgctga

>gi568815592f:35705671_35914780|GENSCAN_predicted_peptide_4|112_aa
MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA
SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ

>gi568815592f:35705671_35914780|GENSCAN_predicted_CDS_4|339_bp
atggagaagatcctgatcctcctgcttgtcgccctctctgtggcctatgcagctcctggc
ccccgggggatcattatcaacctggagaacggtgagctctgcatgaatagtgcccagtgt
aagagcaattgctgccagcattcaagtgcgctgggcctggcccgctgcacatccatggcc
agcgagaacagcgagtgctctgtcaagacgctctatgggatttactacaagtgtccctgt
gagcgtggcctgacctgtgagggagacaagaccatcgtgggctccatcaccaacaccaac
tttggcatctgccatgacgctggacgctccaagcagtga

>gi568815592f:35705671_35914780|GENSCAN_predicted_peptide_5|235_aa
MVKLLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAG
YFGLFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFI
CNTATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFM
LAILSIGDALILSFLAFVLGYRQDKLLPDDYKADGTAVFTLALGLEAAAKLLCAL

>gi568815592f:35705671_35914780|GENSCAN_predicted_CDS_5|708_bp
atggtgaaattgctgccggcccaggaggcagccaagatctaccataccaactatgtgcgg
aactcgcgagccgtgggcgtgatgtggggtaccctcaccatctgcttctccgtactggtc
atggccctcttcatccagccctactggatcggcgacagcgtcaacacaccgcaggcaggc
tacttcggccttttctcctactgcgtgggtaacgtgctgtcctccgagctcatctgcaag
ggcggccccctagacttctcctccatcccctctagagccttcaagactgccatgttcttt
gtggccttgggcatgttcctcatcattggctccatcatctgcttcagcctgttcttcatc
tgcaacacggccacagtctataagatctgtgcatggatgcagctggctgcggccacaggc
ctaatgattggctgcctggtctaccctgatggttgggactcaagtgaggtgcggcgcatg
tgtggggagcagacgggcaagtacacgctgggccactgcaccatccgctgggccttcatg
ctggccatcctcagcattggcgacgccctcatcctctccttcctggccttcgtgttgggc
taccggcaggacaagctcctccctgacgactacaaggcagatggaaccgctgtcttcaca
ttagcccttggattagaagcagcagccaaactcctctgtgcactataa

>gi568815592f:35705671_35914780|GENSCAN_predicted_peptide_6|442_aa
MTFFTELEKTTLKFIWNQKRARIAKSIVSQKNKAGGITLPDFKLYYKATVTKTAWYWYQN
RDIDQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFL
TPYTKINSRWIKDLNVRPKTIKTLEENLGITIQDIGVGKDFMSKTPKAMATKAKIDKWDL
IKLKSFCTAKETTIRVNRQPTTWEKIFTTYSSDKGLISRIYNELKQIYKKKTNNPIKKWA
KDMNRHLSKEDISAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNRCWRG
CGEIGTLLHCWWDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPNDYKSCCYKDTC
TRMFIAALFTIAKTWNQPKCPTMIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETI
ILSKLSQEQKTKHRIFSLIGGN

>gi568815592f:35705671_35914780|GENSCAN_predicted_CDS_6|1329_bp
atgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaaga
gcccgcatcgccaagtcaatcgtaagccaaaagaacaaagctggaggcatcacactacct
gacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaac
agagatatagatcaatggaacagaacagagccctcagaaataatgccgcatatctacaac
tatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaat
aaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttcctt
acaccttatacaaaaatcaattcaagatggattaaagatttaaacgttagacctaaaacc
ataaaaaccctagaagaaaacctaggcattaccattcaggacataggcgtgggcaaggac
ttcatgtccaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatcta
attaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacct
acaacatgggagaaaattttcacaacctactcatctgacaaagggctaatatccagaatc
tacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcg
aaggacatgaacagacacctctcaaaagaagacatttctgcagccaaaaaacacatgaaa
aaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccactatgagatatcat
ctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagagga
tgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattg
tggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagcc
atcccattactgggtatatacccaaatgactataaatcatgctgctataaagacacatgc
acacgtatgtttattgcggcattattcacaatagcaaagacttggaaccaacccaaatgt
ccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgca
gccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaaccatc
attctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggt
gggaattga

>gi568815592f:35705671_35914780|GENSCAN_predicted_peptide_7|586_aa
XSETQHRGSAPHSESDLPEQEEEILGSDDDEQEDPNDYCKGGYHLVKIGDLFNGRYHVIR
KLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVLQGLDYLHTKCRI
IHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPQPKPADKMSKNKKK
KLKKKQKRQAELLEKRMQEIEEMEKESGPGQKRPNKQEESESPVERPLKENPPNKMTQEK
LEESSTIGQDQTLMERDTEGGAAEINCNGVIEVINYTQNSNNETLRHKEDLHNANDCDVQ
NLNQESSFLSSQNGDSSTSQETDSCTPITSEVSDTMVCQSSSTVGQSFSEQHISQLQESI
RAEIPCEDEQEQEHNGPLDNKGKSTAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFT
EDIQTRQYRSLEVLIGSGYNTPADIWSTACMSTKHQDWLLNYVTSPYLRRAAFELATGDY
LFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLF
EVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS

>gi568815592f:35705671_35914780|GENSCAN_predicted_CDS_7|1761_bp
nnatctgaaactcagcaccgaggctctgctccccactctgagagtgatctaccagagcag
gaagaggagattctgggatctgatgatgatgagcaagaagatcctaatgattattgtaaa
ggaggttatcatcttgtgaaaattggagatctattcaatgggagataccatgtgatccga
aagttaggctggggacacttttcaacagtatggttatcatgggatattcaggggaagaaa
tttgtggcaatgaaagtagttaaaagtgctgaacattacactgaaacagcactagatgaa
atccggttgctgaagtcagtgttacagggtcttgattatttacataccaagtgccgtatc
atccacactgacattaaaccagagaacatcttattgtcagtgaatgagcagtacattcgg
aggctggctgcagaagcaacagaatggcagcgatctggagctcctccgccttccggatct
gcagtcagtactgctccccagcctaaaccagctgacaaaatgtcaaagaataagaagaag
aaattgaagaagaagcagaagcgccaggcagaattactagagaagcgaatgcaggaaatt
gaggaaatggagaaagagtcgggccctgggcaaaaaagaccaaacaagcaagaagaatca
gagagtcctgttgaaagacccttgaaagagaacccacctaataaaatgacccaagaaaaa
cttgaagagtcaagtaccattggccaggatcaaacgcttatggaacgtgatacagagggt
ggtgcagcagaaattaattgcaatggagtgattgaagtcattaattatactcagaacagt
aataatgaaacattgagacataaagaggatctacataatgctaatgactgtgatgtccaa
aatttgaatcaggaatctagtttcctaagctcccaaaatggagacagcagcacatctcaa
gaaacagactcttgtacacctataacatctgaggtgtcagacaccatggtgtgccagtct
tcctcaactgtaggtcagtcattcagtgaacaacacattagccaacttcaagaaagcatt
cgggcagagataccctgtgaagatgaacaagagcaagaacataacggaccactggacaac
aaaggaaaatccacggctggaaattttcttgttaatccccttgagccaaaaaatgcagaa
aagctcaaggtgaagattgctgaccttggaaatgcttgttgggtgcacaaacatttcact
gaagatattcaaacaaggcaatatcgttccttggaagttctaatcggatctggctataat
acccctgctgacatttggagcacggcatgcatgagcactaaacaccaggactggttactt
aattatgttacttctccatatctaagacgagcagcctttgaactggccacaggtgactat
ttgtttgaacctcattcaggggaagagtacactcgagatgaagatcacattgcattgatc
atagaacttctggggaaggtgcctcgcaagctcattgtggcaggaaaatattccaaggaa
tttttcaccaaaaaaggtgacctgaaacatatcacgaagctgaaaccttggggccttttt
gaggttctagtggagaagtatgagtggtcgcaggaagaggcagctggcttcacagatttc
ttactgcccatgttggagctgatccctgagaagagagccactgccgccgagtgtctccgg
cacccttggcttaactcctaa