GENSCAN 1.0	Date run:  5-Nov-116	Time: 06:09:52

Sequence gi568815580f:54777586_54989410 : 211825 bp : 38.35% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1947   2044   98  2  2   70   68   105 0.224   6.53
 1.02 Intr +   3015   3150  136  0  1   70   59    39 0.204  -1.15
 1.03 Term +  14089  14439  351  0  0   31   34   303 0.350  12.70
 1.04 PlyA +  14874  14879    6                               1.05

 2.04 PlyA -  14901  14896    6                               1.05
 2.03 Term -  15321  15191  131  1  2   61   41    94 0.002  -0.64
 2.02 Intr -  29999  29853  147  0  0   71  116    78 0.725   8.19
 2.01 Init -  33988  33961   28  1  1   74   94    21 0.299   1.13
 2.00 Prom -  42519  42480   40                              -4.05

 3.05 PlyA -  43279  43274    6                               1.05
 3.04 Term -  46978  46914   65  2  2  110   48    89 0.863   4.17
 3.03 Intr -  51170  50842  329  1  2   13   82   261 0.181  12.42
 3.02 Intr -  51360  51245  116  0  2   51   50   134 0.280   4.23
 3.01 Init -  68080  67979  102  1  0   50  100    63 0.697   3.99
 3.00 Prom -  69586  69547   40                              -4.05

 4.05 PlyA -  70828  70823    6                               1.05
 4.04 Term -  77623  77446  178  0  1   57   37   140 0.310   1.98
 4.03 Intr -  89060  89029   32  2  2  140   98    19 0.351   4.11
 4.02 Intr -  89325  89173  153  0  0   93   61   129 0.750  10.05
 4.01 Init -  98498  98493    6  2  0   84   87     0 0.334   0.44
 4.00 Prom -  99690  99651   40                              -7.75

 5.00 Prom +  99917  99956   40                              -8.05
 5.01 Init + 100001 100153  153  1  0   68   89   108 0.888   8.96
 5.02 Intr + 101784 101869   86  2  2   82   32    88 0.068   0.30
 5.03 Intr + 106748 106851  104  2  2   71   80    20 0.021  -1.60
 5.04 Intr + 110410 110533  124  2  1   73  106   157 0.999  14.72
 5.05 Term + 111639 111828  190  0  1   60   38   256 0.989  13.74
 5.06 PlyA + 112372 112377    6                               1.05

 6.00 Prom + 117230 117269   40                              -4.25
 6.01 Init + 127064 127139   76  1  1   63   70   116 0.839   8.60
 6.02 Term + 128959 129056   98  2  2  101   39    33 0.530  -3.15
 6.03 PlyA + 129899 129904    6                               1.05

 7.14 PlyA - 130005 130000    6                               1.05
 7.13 Term - 132332 132096  237  2  0   76   43   245 0.351  13.98
 7.12 Intr - 139226 139086  141  2  0  102   53    31 0.157   0.63
 7.11 Intr - 140411 140328   84  2  0   77  110    18 0.225   2.00
 7.10 Intr - 148223 148115  109  1  1   78   49    59 0.195   0.37
 7.09 Intr - 156976 156948   29  1  2  110   94    13 0.672   0.10
 7.08 Intr - 157363 157235  129  1  0   55  107   145 0.985  13.07
 7.07 Intr - 159373 159248  126  1  0   52   81   144 0.996  10.06
 7.06 Intr - 160512 160372  141  0  0   82   86   119 0.983  10.73
 7.05 Intr - 163498 163412   87  1  0   90   85    22 0.712   1.35
 7.04 Intr - 165218 165090  129  2  0   37   95   115 0.070   7.07
 7.03 Intr - 172159 172008  152  2  2   71   86    80 0.079   5.06
 7.02 Intr - 174968 174873   96  0  0   37   60   108 0.135   1.96
 7.01 Init - 175258 175210   49  1  1   86   58    47 0.163   0.70
 7.00 Prom - 179450 179411   40                              -6.45

 8.00 Prom + 180082 180121   40                              -3.95
 8.01 Init + 181626 182012  387  2  0   46   39   276 0.047  15.36
 8.02 Intr + 197742 197832   91  2  1  120   67    65 0.044   6.25
 8.03 Intr + 197971 198067   97  2  1   73   69    58 0.027   0.55
 8.04 Term + 205626 205755  130  0  1   30   49   125 0.013  -0.53
 8.05 PlyA + 206545 206550    6                               1.05

 9.02 PlyA - 206817 206812    6                               1.05
 9.01 Term - 207820 207616  205  0  1   55   42   144 0.192   2.36

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 101784 101873   90  2  0   82   38   101 0.880   1.24
S.002 Init - 165206 165090  117  2  0   63   95   120 0.900  10.45


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580f:54777586_54989410|GENSCAN_predicted_peptide_1|194_aa
MTKLKCSTAREESTQQRTKVQDVKAIPSVGKNSKDTIRIGLEPTHMTSYNYLFKGPVSKY
GHILRYWQLGFQHTDLGETTGPAHPGPIKTGDPSRPTHRRPDVKRSISADKDTSSWTERG
HLERTLAEEHTGTCWQASRPSTRGTRWSLAGQSEESRGRQAAQLQGKTISLLALHGGTAP
LIKLCTQSPSPGVI

>gi568815580f:54777586_54989410|GENSCAN_predicted_CDS_1|585_bp
atgaccaaactcaagtgcagcacagccagggaggaatctacacagcaacgtacaaaggtc
caggatgtgaaagctattccttcagttggaaaaaatagtaaggacaccattcgtattgga
ttagagccaacccacatgacctcatataactacctctttaaaggtcctgtctccaaatat
ggtcatattctgagatattggcagttaggatttcaacatacagatttgggggagaccact
gggcctgcccatcctgggcctataaaaaccggagaccctagcaggccgactcacaggcgg
ccagacgtcaagaggagcatatcagcagacaaagacacaagcagctggacagagagagga
catctagagcgcacgctggctgaagagcacactggcacatgctggcaagccagcaggcca
tcaacccgcgggacgaggtggagtttggcagggcagtcggaggagagtaggggccgccaa
gctgcccaactccaggggaaaaccatctcccttctggctctccatggtgggacagctcct
ttaataaaactttgcactcaatctccaagcccaggtgtgatctga

>gi568815580f:54777586_54989410|GENSCAN_predicted_peptide_2|101_aa
MQIHRARLKPGNQMIRILIELRNELVVSKAGDLVMSQVIMFNPVKLQVPEEIMSLKQEVK
TEERLYYAIDTGDNFANLLYLSIFYFMSTTGTLEYLFVRNL

>gi568815580f:54777586_54989410|GENSCAN_predicted_CDS_2|306_bp
atgcagattcaccgagccagactaaagcctggcaaccagatgatacgcatattgatagag
ctaagaaatgagctggttgtgtcaaaggctggagacttagtgatgagtcaagttatcatg
ttcaatcctgtaaagctccaagttcccgaggagattatgtccttaaaacaagaagtcaaa
actgaggaacgactgtattatgctattgacactggtgacaattttgcaaatctcttatac
ctgagtattttctattttatgagtactaccggaactttagaatacctttttgttagaaat
ttgtaa

>gi568815580f:54777586_54989410|GENSCAN_predicted_peptide_3|203_aa
MQKARAKTRQTYSRGQSGGPTSDSGPWEQTRKNKLFDKQTLKESQVELAHAIRAAHSTTV
FFARISAGNRDRSTRVGGNAFQQQQPAFPTHQPAKFPCRESRCQISERFPSPSQALELPG
STVSKETGSAPQGDEHGDSYLSPPTCGSGWVQGRAVRSPCPSGLRVAGLVAPPSESAAAA
GLVRRCEEPTKSSKPLEDMKAPR

>gi568815580f:54777586_54989410|GENSCAN_predicted_CDS_3|612_bp
atgcaaaaggctagagcaaagacaagacaaacatattccagggggcagtcagggggtcca
accagcgactcagggccctgggaacagactaggaaaaacaagctgtttgataagcaaaca
ctcaaggagagccaggtcgagttggcccatgccatccgtgcagcacacagcactactgtc
ttctttgcaaggatttctgctggaaaccgcgatcgaagcacccgggtgggtgggaacgcg
ttccagcagcagcagcccgccttcccaactcaccagcctgcgaagtttccttgccgggag
agcaggtgtcagatttcagagaggtttccttccccttcccaagccctggaactcccgggc
tccaccgtcagcaaggagacaggatctgctccacagggcgatgagcacggggacagctac
ttatctcctccaacctgtggctccggatgggtccaaggccgggcggtccgcagcccctgc
ccgtcaggactgcgagtggcagggctggtggcaccaccctcggagtccgccgcggcggcg
gggctggtgcgcagatgcgaagaaccaacgaagagctctaagcccctagaagacatgaaa
gcccctagatga

>gi568815580f:54777586_54989410|GENSCAN_predicted_peptide_4|122_aa
MIDPYIKTFELVSRYGGALNWCLPFKIRGAAPHRVFSRTPRRKNGLAPSARMMVGQLGIW
LSARSAAALDSHRSMNSIVNCTCKGSGLHASYENLMPDDLSLSPITPRWDSPVAGKQAQG
SH

>gi568815580f:54777586_54989410|GENSCAN_predicted_CDS_4|369_bp
atgattgatccgtacataaaaacctttgaacttgtttcccgttatggtggtgccttgaat
tggtgtcttccatttaaaatacgaggagctgccccacatcgggttttctccaggacaccg
aggagaaaaaatggtttggctcccagtgccagaatgatggtaggacaactaggcatctgg
ctgtctgccagatcagcagcagcattagattctcacaggagcatgaattctattgtgaac
tgcacatgcaagggatctgggttgcacgcttcttatgagaatctaatgcctgatgatctg
tcactgtctcccatcacccccagatgggacagtccagttgcgggaaaacaagctcagggc
tcccactga

>gi568815580f:54777586_54989410|GENSCAN_predicted_peptide_5|218_aa
MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG
SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN
AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL
IMKRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC

>gi568815580f:54777586_54989410|GENSCAN_predicted_CDS_5|657_bp
atgaccgatggagactatgattatctgatcaaactcctggccctcggggattcaggggtg
gggaagacaacatttctttatagatacacagataataaattcaatcccaaattcatcact
acagtaggaatagactttcgggaaaaacgtgtggtttataatgcacaaggaccgaatgga
tcttcagggaaagcatttaaagtgcatcttcagctttgggacactgcgggacaagagcgg
ttccggagtctcaccactgcatttttcagagacgccatgggcttcttattaatgtttgac
ctcaccagtcaacagagcttcttaaatgtcagaaactggatgagccaactgcaagcaaat
gcttattgtgaaaatccagatatagtattaattggcaacaaggcagacctaccagatcag
agggaagtcaatgaacggcaagctcgggaactggctgacaaatatggcataccatatttt
gaaacaagtgcagcaactggacagaatgtggagaaagctgtagaaacccttttggactta
atcatgaagcgaatggaacagtgtgtggagaagacacaaatccctgatactgtcaatggt
ggaaattctggaaacttggatggggaaaagccaccagagaagaaatgtatctgctag

>gi568815580f:54777586_54989410|GENSCAN_predicted_peptide_6|57_aa
MREHEGSRREEEPVSAIPPGEDIPQRSKQLGLAIVLHHPNGNGKDGREQNISHPSFP

>gi568815580f:54777586_54989410|GENSCAN_predicted_CDS_6|174_bp
atgagggagcatgagggaagccggagagaggaagagcctgtatctgccattccacctggt
gaagacattccccagaggtccaagcagctgggactggccatagtgcttcaccatcccaat
gggaatggtaaagatggaagggagcaaaatattagccatccttccttcccttag

>gi568815580f:54777586_54989410|GENSCAN_predicted_peptide_7|502_aa
MGFRHVGQSALDLLTSGNCQAVVRSSSTFSIPISNRQEFQLFHILTRTAPGSEHEQVRDL
SCKTHTDGASAYLGRRFKHKLAKTCQTSSMVLFNQQPPDPEFTMTTVTVTTEIPPRDKME
DNSALYESTSAHIIEETEYVKKIRTTLQKIRTQMFKDEIRHDSTNHKLDAKHCGNLQQGS
DSEMDPSCCSLDLLMKKIKGKDLQLLEMNKENEVLKIKLQASREAGAAALRNVAQRLFEN
YQTQSEEVRKKQEDSKQLLQVNKLEKEQKLKQHVENLNQVAEKLEEKHSQITELENLVQR
MEKEICDLERGTSYPLFHWGPIVSDVYTHGSPEKHWILNRRQYESPQMVMEGLKNNLKEQ
DKRIENLREKVNILEAQVRIITIQGEIWVRTQSQTISTPLLALSCCPLLAMPLPCRKCNE
APAKAKRRKEELWPFGQPRPGSSLSQGCDSLFGALRFLASPSFWVPPCSPVPAVEAACGA
PGLAAASQSQHPCQYPALCAPL

>gi568815580f:54777586_54989410|GENSCAN_predicted_CDS_7|1509_bp
atggggtttcgccatgttggccagtctgctctcgatctcctgacctcaggaaactgccaa
gctgttgtccgcagcagctccacattttccattcccatcagcaacagacaggagttccaa
ctgttccacatcctcaccagaactgctccagggagtgagcatgaacaagtaagagacctt
tcctgcaagactcatacagatggtgcctcagcatatctgggaaggagattcaagcacaag
ctagccaaaacctgccagacatccagcatggtgcttttcaatcagcagcccccagaccca
gaattcacaatgacaacagtgacagtgaccacagaaattcccccaagggataagatggaa
gataattctgccttgtatgagtctacgtccgctcacattattgaagaaaccgagtatgtg
aaaaagattcgaactactctgcaaaagatcaggacccagatgtttaaagatgaaataaga
catgacagtacaaatcacaaactagatgcaaagcactgtggaaaccttcaacagggctct
gattctgaaatggatccttcttgttgcagtttggatttgcttatgaaaaagataaaagga
aaagacctacagctcttagaaatgaacaaagagaatgaagtattgaaaatcaagctgcaa
gcctccagagaagcaggagcagcagctctgagaaacgtggcccagagattatttgaaaac
taccaaacgcaatctgaagaagtgagaaagaagcaggaggacagtaaacaattactccag
gttaacaagcttgaaaaagaacagaaattgaaacaacatgttgaaaatctgaatcaagtt
gctgaaaaacttgaagaaaaacacagtcaaattacagaattggagaaccttgtacagaga
atggaaaaggaaatatgtgacttagaaaggggaaccagttatcctttattccactggggg
cccatagtcagtgatgtttacactcatggaagtccagagaaacattggatcctaaacaga
aggcagtatgagtccccacagatggtaatggaaggattaaaaaataatttaaaagaacaa
gacaaaagaattgaaaatctcagagaaaaggttaacatacttgaagcccaggtgaggatt
attacaattcaaggtgagatttgggtgaggacacagagccaaaccatatcaacccccttg
ctagcactcagctgctgtcctctgctggcgatgcccctgccttgcaggaagtgcaatgaa
gcccctgccaaggcaaagagaaggaaagaagagctgtggccctttgggcagcccagacct
gggagctccctgagccagggctgtgactctctctttggggccttgcggttcctggcatct
ccaagcttctgggtgccaccgtgttccccggtgccagctgtggaagctgcttgtggtgca
cctggtctagccgcagcctcgcagagccagcacccatgccagtacccggcgctgtgtgcc
ccactgtag

>gi568815580f:54777586_54989410|GENSCAN_predicted_peptide_8|234_aa
MSLMPGTPLGKPLERHLDTHTHGGDAGARRRDRARRWPDSPTLWGAQPTRGPGAAPPLGD
RTLGPGSAARALRVQPPPPAGLAPPRGARPGQSPAPVRPRGGVAAGRVRPALESQALPLT
PLARVLYRRGPSSFALALGSAEGKRRHSIPKSSLDFWSCRKQGTFICCAELRPQRAQVTA
VLLSLHLELLGRIPVRNLDSADSKYDNMLPPSGHFIKRLDIQVPETVYVFRILE

>gi568815580f:54777586_54989410|GENSCAN_predicted_CDS_8|705_bp
atgtccttgatgccaggaactccactggggaagccgctggaaaggcacctggacacccac
acacatggaggggatgcgggggcgcgccgcagggaccgggcccgaaggtggccagactcg
cctaccttgtggggcgcccagccgacgcggggtcccggtgctgctcctcccctgggcgat
cggaccttggggccagggtcggctgccagggccctgcgagtgcagccgccaccgcccgca
ggcttggctccgccccgcggggcgcgcccagggcagagtccggcgccggtgaggccccgg
ggaggagtcgcggcaggacgcgtacgcccagcgctggagagccaggctctgcccctcacg
cccctcgctagggtgctgtacaggcggggtccttctagctttgctctagctcttggttca
gcagaaggaaaaagaagacacagtatccccaagtcctccctggacttctggtcttgtagg
aagcagggcaccttcatttgttgtgctgagctcaggcctcagagggcacaagtgaccgcc
gtattgctcagtcttcatcttgagctccttggcaggatccctgttagaaatttagacagt
gcggacagtaaatatgacaacatgttgccacctagtggacatttcataaaacgtctagac
atccaggttcctgaaacagtgtacgtatttaggatcctggagtag

>gi568815580f:54777586_54989410|GENSCAN_predicted_peptide_9|68_aa
XNAQASVDQEQGGDRRGRVIRKVREVAGSKLSKAMKAIMGTSSLEKKWEPLEGFEHESRH
TLIAESHS

>gi568815580f:54777586_54989410|GENSCAN_predicted_CDS_9|207_bp
nnaaatgcacaggccagtgtggaccaagaacaaggtggggacaggcgtggaagagtaata
agaaaagtcagagaggtagcggggtcaaaactgtctaaagccatgaaggccattatgggt
acttcgtccttggagaaaaaatgggagcccttggagggctttgagcatgaaagccgccac
actctgatagctgagtcacattcttaa