GENSCAN 1.0	Date run:  7-Nov-116	Time: 15:30:25

Sequence gi568815594f:139566020_139804145 : 238126 bp : 43.25% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   9304   9508  205  0  1   53   78   125 0.342   7.01
 1.02 Term +  31644  31828  185  1  2   30   41   116 0.011  -1.19
 1.03 PlyA +  32967  32972    6                               1.05

 2.00 Prom +  41207  41246   40                              -1.56
 2.01 Init +  59799  59848   50  2  2   38   96    50 0.705   1.25
 2.02 Intr +  59968  60182  215  1  2   88   77    99 0.522   7.16
 2.03 Term +  68012  68337  326  0  2   80   37   167 0.148   5.73
 2.04 PlyA +  69062  69067    6                              -0.45

 3.00 Prom +  69756  69795   40                              -4.46
 3.01 Init +  74985  75036   52  2  1  110   94    18 0.170   5.96
 3.02 Intr +  77470  77551   82  2  1  113   88    20 0.171   3.20
 3.03 Intr +  84006  84171  166  0  1   24   93    81 0.039   2.16
 3.04 Term +  90750  90896  147  2  0  119   53    10 0.093  -1.50
 3.05 PlyA +  93642  93647    6                              -0.45

 4.00 Prom +  94979  95018   40                              -6.06
 4.01 Init + 100001 100058   58  1  1   87   69   110 0.925   8.48
 4.02 Intr + 112524 112623  100  1  1  109   98    44 0.110   6.67
 4.03 Term + 121828 121855   28  1  1  125   40    10 0.007  -2.55
 4.04 PlyA + 122037 122042    6                               1.05

 5.03 PlyA - 122518 122513    6                               1.05
 5.02 Term - 130137 130072   66  0  0  118   39    88 0.785   4.84
 5.01 Init - 130669 130508  162  1  0   21    8   169 0.406   1.93
 5.00 Prom - 131846 131807   40                              -4.16

 6.02 PlyA - 132085 132080    6                              -0.45
 6.01 Sngl - 132535 132125  411  1  0   79   48   375 0.971  28.89
 6.00 Prom - 136719 136680   40                              -2.76

 7.03 PlyA - 136909 136904    6                               1.05
 7.02 Term - 138481 138364  118  0  1    9   38   101 0.143  -4.79
 7.01 Init - 142588 141696  893  1  2   39   53   256 0.304  11.04
 7.00 Prom - 150157 150118   40                               0.24

 8.07 PlyA - 150339 150334    6                               1.05
 8.06 Term - 151698 151537  162  0  0   71   43    73 0.418  -0.96
 8.05 Intr - 152657 152497  161  0  2   56   94   113 0.708   8.41
 8.04 Intr - 154304 153315  990  0  0   92   19   340 0.768  18.33
 8.03 Intr - 159816 159732   85  0  1   87  100    49 0.606   5.39
 8.02 Intr - 164648 164397  252  2  0  105   92   365 0.755  36.23
 8.01 Init - 169941 169861   81  0  0   53  -15   148 0.587  -0.03
 8.00 Prom - 171553 171514   40                              -5.26

 9.00 Prom + 173309 173348   40                              -4.66
 9.01 Init + 197292 197436  145  2  1   16   84   195 0.715  12.18
 9.02 Term + 213983 214008   26  0  2  120   38    19 0.014  -1.51
 9.03 PlyA + 214086 214091    6                               1.05

10.02 PlyA - 214557 214552    6                               1.05
10.01 Term - 234687 234572  116  1  2   97   53   116 0.975   7.73

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  61882  61952   71  2  2   77   39   102 0.867   2.30
S.002 Term + 100187 100347  161  0  2  109   38    35 0.801  -1.30


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:139566020_139804145|GENSCAN_predicted_peptide_1|129_aa
MCIKYSLKGEESIQTLLSFIRQTHIEHLERMKEQQRKGSGSESAPKARQVEADHKNPWKG
KCWEIFPGGLFTQLPTHQLHWMSDKHLNPDMSSTELLDFSPKLAFFSISVNGKFIFTVAQ
IKIRVTVVS

>gi568815594f:139566020_139804145|GENSCAN_predicted_CDS_1|390_bp
atgtgcatcaagtactccctcaaaggggaagaatccatccagacactcttatctttcatt
cgacaaacacatattgagcacctggaacgcatgaaggaacagcaaagaaaaggctcgggt
tctgaaagtgctcccaaggcgaggcaggtggaggcagatcacaagaacccttggaagggc
aagtgctgggagatttttccaggaggcttattcacccagctgcccactcatcagctccac
tggatgtcagacaagcatctcaaccctgacatgtccagcaccgagctcctggacttctct
cccaaactggcattcttctccatctcagttaatggcaagttcatctttacagttgctcag
attaaaataagagtcactgtagtgagttga

>gi568815594f:139566020_139804145|GENSCAN_predicted_peptide_2|196_aa
MPKIGLSECQYLLQPIRLWVSHRRAEVYSMNVCVVYEKMVTITNLQGNANQNQNEILLTP
VKVAIIKKTKYNRAGEDVEKGEHSLYTVAPHPPVISVPQPVTLPSTQPASLYPSSCMDAP
AILVAQDCANNHQYAFTSSAPPMPLLTLSYQSDILNFSFSYLHILFLSLLCRLHLTCLLL
KLPCNAYYAKAKKQVD

>gi568815594f:139566020_139804145|GENSCAN_predicted_CDS_2|591_bp
atgcctaaaattggcttgtctgagtgccaatatctgctgcagcccatcagattatgggtt
tctcataggagagctgaagtctactcaatgaatgtctgtgtggtatatgaaaaaatggtc
accatcactaatcttcaaggaaatgcaaatcaaaaccaaaatgagatattactcactcca
gttaaagtggctattatcaaaaagacaaaatataacagagctggtgaggatgtggagaaa
ggggaacactccttgtacactgttgcccctcatcctcctgtcatttcggtccctcaaccg
gtcactttgccatccactcaacctgcttctctgtacccttcttcatgcatggatgcccct
gccattcttgttgcacaggattgcgccaataaccaccagtatgcttttacctcttctgct
cccccaatgccccttctcacactctcataccagtccgacatcctcaacttcagtttctct
tatctacacatacttttcctgtcacttctatgccgactccatctcacgtgcctgctcttg
aaacttccatgcaacgcttattacgccaaagcaaagaagcaagtagattag

>gi568815594f:139566020_139804145|GENSCAN_predicted_peptide_3|148_aa
MGPVQLWRALSKETRLAAPCATSLHDTERGHLCSQMLLSVFVTKALEKSQRMREFYELQE
WSALEDIQRRVNRERTAFHKEVDTGDVLVINRDLQTRSIQFATGMPNVKCPFLTLLHGMY
VSGAASVFGFRLALSGSGLTVKSWYFYI

>gi568815594f:139566020_139804145|GENSCAN_predicted_CDS_3|447_bp
atggggccagtgcagctgtggagagctctgagcaaagaaacaaggttggcagcaccctgt
gcaaccagcttgcatgacactgagcgggggcacctctgctcacagatgttgctgtctgtc
tttgtcaccaaggcgttagaaaaatctcagagaatgagggagttctatgaactccaggaa
tggtctgctttggaggacatccaaaggagagtgaacagagaaaggacagcttttcacaaa
gaagtggacactggtgatgttctggtcatcaatagagacctccaaaccagatctatccag
tttgccacagggatgccaaacgtaaagtgtccttttctgacccttctccatggaatgtac
gtctctggggcagcgtctgtgtttggcttccgtctagctctgagtggatcaggactaacg
gttaaatcctggtatttttacatttga

>gi568815594f:139566020_139804145|GENSCAN_predicted_peptide_4|61_aa
MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQRGLTDDS
L

>gi568815594f:139566020_139804145|GENSCAN_predicted_CDS_4|186_bp
atggccgggaactcgatcctgctggctgctgtctctattctctcggcctgtcagcaaagt
tattttgctttgcaagttggaaaggcaagattaaaatacaaagttacgcccccagcagtc
actgggtcaccagagtttgagagagtatttcgggcacagagaggacttacagatgacagt
ctctag

>gi568815594f:139566020_139804145|GENSCAN_predicted_peptide_5|75_aa
MTLTGFTTEPIKEIMKEIVAVAKNVGDEGSQDMNLGEIQELIDTTPDELTEDDLLTQREN
DEDEDLYDGPLPLNK

>gi568815594f:139566020_139804145|GENSCAN_predicted_CDS_5|228_bp
atgacactcacaggatttacaacagagccaatcaaggaaatcatgaaagagatagtggct
gtggcaaagaatgtgggggatgaagggtctcaagatatgaatcttggagaaattcaagag
ctaatagacaccacgccagatgaattaacagaagatgacttgcttactcaacgtgaaaat
gatgaggatgaagacctttatgatggtccacttccacttaataaatag

>gi568815594f:139566020_139804145|GENSCAN_predicted_peptide_6|136_aa
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
LLVRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
MPKDIQLAHSIRGERA

>gi568815594f:139566020_139804145|GENSCAN_predicted_CDS_6|411_bp
atggctcgtacaaagcagactgcccgcaaatcgaccggtggtaaagcacccaggaagcaa
ctggctacaaaagccgctcgcaagagtgcgccctctactggaggggtgaagaaacctcat
cgttacaggcctggtactgtggcgctccgtgaaattagacgttatcagaagtccactgaa
cttctggttcgcaaacttcccttccagcgtctggtgcgagaaattgctcaggactttaaa
acagatctgcgcttccagagcgcagctatcggtgctttgcaggaggcaagtgaggcctat
ctggttggcctttttgaagacaccaacctgtgtgctatccatgccaaacgtgtaacaatt
atgccaaaagacatccagctagcacacagcatacgtggagaacgtgcttaa

>gi568815594f:139566020_139804145|GENSCAN_predicted_peptide_7|336_aa
MTFFTELEKTTLKFIWNQKRAHITKSILSQKNKAGGITIPDFKLYYKATVNKTAWYWYQK
RDIDQWNRTEPSEIMPHIYNHLIFDKPDKNKQWGKDSLFNKWCWENWLAICRKLKLDPFL
TPYTKINSRWNKDLRVRPKTIKTLEENLGNIIQDIGMGKDKDFMSKTPKAMATKDKMDKR
DLIKLKSFCTAKETTIRVNRQPTEWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKK
WAKDMNRHFSKEDIYAAKKYMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIQKSGNNSFC
LKLSIKREAVRVAGYVSSPRNGQHTGQAAVSLHNRS

>gi568815594f:139566020_139804145|GENSCAN_predicted_CDS_7|1011_bp
atgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaaga
gcccacatcaccaagtcaatcctaagccaaaagaacaaagccggaggcatcacgatacct
gacttcaaactatactacaaggctacagtcaacaaaacagcatggtactggtaccaaaaa
agagatatagatcaatggaacagaacagagccctcagaaataatgccgcatatctacaac
catctgatctttgataaacctgacaaaaacaagcaatggggaaaggattccctatttaat
aaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttcctt
acaccttatacaaaaattaattcaagatggaataaagacttacgtgttagacctaaaacc
ataaaaaccctagaagaaaacctaggcaatatcattcaggacataggcatgggcaaggac
aaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagacaaaatggacaaacgg
gatctaattaaactcaagagcttctgcacagcaaaagaaactaccatcagagtgaacagg
caacctacagaatgggagaaaatttttgcaacctactcatctgacaaagggctaatatcc
agaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaag
tgggcgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaatac
atgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgaga
taccatctcacaccagttagaatggcgatcattcaaaagtcaggaaacaacagcttctgt
ctgaaactttccatcaagagagaagcagtcagagtggcaggatatgtcagtagtcctcgg
aacggccagcacacgggtcaggctgctgtgtccctacacaaccggtcatga

>gi568815594f:139566020_139804145|GENSCAN_predicted_peptide_8|576_aa
MRPLEHTAASRAPERRARAEDLQGPSREQHPVGLPRTTGPMQSSVPPGSGGMVSGASPAG
PGFLGSQPQAAIMKQMLIDQRAQLIEQQKQQFLREQRQQQQQQQQQILAEQQLQQSHLPR
QHLQPQRNPYPVQQVNQFQGSPQDIAAVRSQAALQSMRTSRLMAQNAGMMGIGPSQNPGT
MATAAAQSEMGLAPYSTTPTSQPGMYNMSTGMTQMLQHPNQSGMSITHNQAQGPRQPASG
QGVGMVSGFGQSMLVNSAITQQHPQMKGPVGQALPRPQAPPRLQSLMGTVQQGAQSWQQR
SLQGMPGRTSGELGPFNNGASYPLQAGQPRLTKQHFPQGLSQSVVDANTGTVRTLNPAAM
GRQMMPSLPGQQGTSQARPMVMSGLSQGVPGMPAFSQPPAQQQIPSGSFAPSSQSQAYER
NAPQDVSYNYSGDGAGGSFPGLPDGADLVDSIIKGGPGDEWMQELDELFGIAKALLSQGE
QAEFGAGSIRQSWDGFPLLVPLVAVPPGGAGACWRPIQNPYIQADHYGRVGACGVGLATL
SPEKASCHGKLGAEVFLERRRQANIAFDLLSAYPGL

>gi568815594f:139566020_139804145|GENSCAN_predicted_CDS_8|1731_bp
atgcgcccgctggagcacaccgcagcctcgcgggctcccgagcggcgcgcgcgggccgag
gacctccagggcccctcgcgggagcagcatccagttggacttccccgaaccacaggcccc
atgcagtcctccgtgcccccaggctcaggtggcatggtctcaggagccagtcccgcaggc
cccggcttcctgggcagccagccccaagcagccatcatgaagcagatgctcattgatcag
cgggcccagttgatagagcagcagaagcaacagttcctgcgggagcaaaggcagcagcag
cagcagcagcagcagcagattttggcggaacagcagttgcagcaatcacatctaccccgg
cagcacctccagccacagcggaatccatacccagtgcagcaggtcaatcagtttcaaggt
tctccccaggatatagcagccgtaagaagccaagcagccctccagagcatgcgaacgtca
cggctgatggcacagaacgcaggcatgatgggaataggaccctcccagaaccctgggacg
atggccaccgcagctgcgcagtcggagatgggactggccccttatagcaccacgcctacc
agccaaccaggaatgtacaatatgagcacaggcatgacccaaatgttgcagcatccaaac
caaagtggcatgagcatcacacataaccaagcccagggaccgaggcaacctgcctctggg
cagggggttggaatggtgagtggctttggtcagagcatgctggtgaactcagccattacc
cagcaacatccacagatgaaagggccagtaggccaggccttgcctaggccccaagcccct
ccaaggctgcagagccttatgggaacagtccagcaaggagcacaaagctggcaacagagg
agcttgcagggcatgcctgggaggactagtggagaattgggaccattcaacaatggcgcc
agctaccctcttcaagctgggcagccgagactgaccaagcagcacttcccacagggactg
agccagtcagtcgtggatgctaacacgggcacagtgaggaccctcaacccagctgccatg
ggtcggcagatgatgccatcgctcccggggcagcaaggcaccagccaggcgaggccaatg
gtcatgtctggcctgagccagggagtcccaggcatgccagcgttcagccagcccccagca
cagcagcagatacccagtggcagctttgctccaagcagccagagccaagcctatgagcgg
aatgcccctcaggacgtgtcatacaattacagtggcgacggagctgggggttccttccct
ggcctcccggacggtgcagaccttgtggactccatcatcaaaggcgggccaggggacgag
tggatgcaggagcttgatgaattgtttggaattgcaaaggctctgctgtcacaaggagag
caggctgagtttggagcagggtccatccggcagtcctgggacggcttccctctgctggtg
cccctggtggcagtccctccaggtggggctggagcctgctggcgcccaatacaaaaccca
tacatccaggcagatcactacggaagagtcggagcctgtggggttggactggccacactc
agtcctgagaaggcgagttgccatggaaagctgggggcagaggtgtttttggagaggagg
cggcaggcaaacattgcctttgacttgctctccgcgtacccggggttgtag

>gi568815594f:139566020_139804145|GENSCAN_predicted_peptide_9|56_aa
MTKALGKAEEESGFCENEQGSCSESAAEGAICLSNEKYGAKEAHGIQTCQQMRCHS

>gi568815594f:139566020_139804145|GENSCAN_predicted_CDS_9|171_bp
atgactaaggccctaggcaaagctgaagaggagtctggattctgtgagaatgaacaaggc
agctgctcggagtcggctgctgagggggccatctgtttaagcaacgagaagtacggagct
aaagaggcacacggtattcaaacatgccagcagatgcgctgccattcctga

>gi568815594f:139566020_139804145|GENSCAN_predicted_peptide_10|38_aa
XIKADFEFSNENKSEAFLIVLSCVYNLPVTEASFVAKV

>gi568815594f:139566020_139804145|GENSCAN_predicted_CDS_10|117_bp
naaattaaagctgactttgagttttcaaatgaaaacaaatcggaggcctttctgattgtt
ttatcttgcgtgtacaatcttccagtgacggaggcctccttcgttgctaaagtctga