Result of FASTA (ccds) for pF1KB7990
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7990, 326 aa
  1>>>pF1KB7990 326 - 326 aa - 326 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6692+/-0.000755; mu= 2.4330+/- 0.046
 mean_var=185.8588+/-37.140, 0's: 0 Z-trim(116.5): 39  B-trim: 112 in 1/51
 Lambda= 0.094077
 statistics sampled from 17068 (17105) to 17068 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.525), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS1766.1 FOSL2 gene_id:2355|Hs108|chr2           ( 326) 2146 302.6 2.8e-82
CCDS9841.1 FOS gene_id:2353|Hs108|chr14            ( 380)  630 96.9 2.8e-20
CCDS8121.1 FOSL1 gene_id:8061|Hs108|chr11          ( 271)  487 77.4 1.5e-14
CCDS12664.1 FOSB gene_id:2354|Hs108|chr19          ( 338)  487 77.4 1.8e-14


>>CCDS1766.1 FOSL2 gene_id:2355|Hs108|chr2                (326 aa)
 initn: 2146 init1: 2146 opt: 2146  Z-score: 1590.6  bits: 302.6 E(32554): 2.8e-82
Smith-Waterman score: 2146; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)

               10        20        30        40        50        60
pF1KB7 MYQDYPGNFDTSSRGSSGSPAHAESYSSGGGGQQKFRVDMPGSGSAFIPTINAITTSQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MYQDYPGNFDTSSRGSSGSPAHAESYSSGGGGQQKFRVDMPGSGSAFIPTINAITTSQDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 QWMVQPTVITSMSNPYPRSHPYSPLPGLASVPGHMALPRPGVIKTIGTTVGRRRRDEQLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QWMVQPTVITSMSNPYPRSHPYSPLPGLASVPGHMALPRPGVIKTIGTTVGRRRRDEQLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEEKSGLQKEIAELQKEKEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEEKSGLQKEIAELQKEKEKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 EFMLVAHGPVCKISPEERRSPPAPGLQPMRSGGGSVGAVVVKQEPLEEDSPSSSSAGLDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 EFMLVAHGPVCKISPEERRSPPAPGLQPMRSGGGSVGAVVVKQEPLEEDSPSSSSAGLDK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AQRSVIKPISIAGGFYGEEPLHTPIVVTSTPAVTPGTSNLVFTYPSVLEQESPASPSESC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AQRSVIKPISIAGGFYGEEPLHTPIVVTSTPAVTPGTSNLVFTYPSVLEQESPASPSESC
              250       260       270       280       290       300

              310       320      
pF1KB7 SKAHRRSSSSGDQSSDSLNSPTLLAL
       ::::::::::::::::::::::::::
CCDS17 SKAHRRSSSSGDQSSDSLNSPTLLAL
              310       320      

>>CCDS9841.1 FOS gene_id:2353|Hs108|chr14                 (380 aa)
 initn: 703 init1: 560 opt: 630  Z-score: 477.6  bits: 96.9 E(32554): 2.8e-20
Smith-Waterman score: 771; 42.4% identity (64.6% similar) in 387 aa overlap (1-317:2-371)

                10         20                 30          40       
pF1KB7  MYQDYPGNFD-TSSRGSSGSPA-------H--AESYSSGGG--GQQKFRVDMPGSGSAF
        :.. . .... .::: ::.:::       :  :.:.:: :.  . : : .:.  :.. :
CCDS98 MMFSGFNADYEASSSRCSSASPAGDSLSYYHSPADSFSSMGSPVNAQDFCTDLAVSSANF
               10        20        30        40        50        60

        50        60        70         80        90       100      
pF1KB7 IPTINAITTSQDLQWMVQPTVITSMSNPYPRS-HPYSPLPGLASVPGHMALPRPGVIKTI
       :::..::.:: ::::.:::....:..    :. ::.. .:.    :.  :  : ::.::.
CCDS98 IPTVTAISTSPDLQWLVQPALVSSVAPSQTRAPHPFG-VPA----PSAGAYSRAGVVKTM
               70        80        90        100           110     

            110       120       130       140       150       160  
pF1KB7 ----GTTVGRRRRDEQLSPEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEE
           . ..::: . :::::::::::::::::::.:::::::::::::. :::::..::.:
CCDS98 TGGRAQSIGRRGKVEQLSPEEEEKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDE
         120       130       140       150       160       170     

            170       180       190                          200   
pF1KB7 KSGLQKEIAELQKEKEKLEFMLVAHGPVCKIS-----PEERR--------------SP--
       ::.:: :::.: ::::::::.:.:: :.:::      :::                .:  
CCDS98 KSALQTEIANLLKEKEKLEFILAAHRPACKIPDDLGFPEEMSVASLDLTGGLPEVATPES
         180       190       200       210       220       230     

                          210       220        230       240       
pF1KB7 -------------PAPGLQPMRSGGGSVGAVVVKQEPLEE-DSPSSSSAGLDKAQRSVIK
                    : :...:..:    .... .: ::...   :.::  . ... :::  
CCDS98 EEAFTLPLLNDPEPKPSVEPVKS----ISSMELKTEPFDDFLFPASSRPSGSETARSV-P
         240       250           260       270       280        290

       250         260                       270       280         
pF1KB7 PISIAGGFYGE--EPLHT------PI----------VVTSTPAVTPGTSNLVFTYPSVLE
        ....:.::.   ::::.      :.          ::: ::. :  ::..:::::    
CCDS98 DMDLSGSFYAADWEPLHSGSLGMGPMATELEPLCTPVVTCTPSCTAYTSSFVFTYP----
              300       310       320       330       340          

     290       300       310       320      
pF1KB7 QESPASPSESCSKAHRRSSSSGDQSSDSLNSPTLLAL
        :. . ::  :. :::..:::.. ::::         
CCDS98 -EADSFPS--CAAAHRKGSSSNEPSSDSLSSPTLLAL
         350         360       370       380

>>CCDS8121.1 FOSL1 gene_id:8061|Hs108|chr11               (271 aa)
 initn: 546 init1: 413 opt: 487  Z-score: 374.8  bits: 77.4 E(32554): 1.5e-14
Smith-Waterman score: 766; 46.7% identity (65.7% similar) in 332 aa overlap (1-326:1-271)

                 10        20        30        40        50        
pF1KB7 MYQDY--PGNFDTSSRGSSGSPAHAESYSSGGGGQQKFRVDMPGSGSAFIPTINAITTSQ
       :..:.  ::  .... :. :.::.  . ...  .::::..         .:.::... ::
CCDS81 MFRDFGEPGP-SSGNGGGYGGPAQPPAAAQA--AQQKFHL---------VPSINTMSGSQ
               10         20        30                   40        

       60        70        80         90       100       110       
pF1KB7 DLQWMVQPTVITSMSNPYPRSHP-YSPLPGLASVPGHMALPRPGVIKTIGTTVGRRRRD-
       .:::::::  .   : : : ..: :::       :     ::::::...:   : :::  
CCDS81 ELQWMVQPHFLGPSSYPRPLTYPQYSP-------P----QPRPGVIRALGPPPGVRRRPC
       50        60        70                   80        90       

        120       130       140       150       160       170      
pF1KB7 EQLSPEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEEKSGLQKEIAELQKE
       ::.::::::.::.::::::::::::::::.:::. :::::..::.::::::.:: ::::.
CCDS81 EQISPEEEERRRVRRERNKLAAAKCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQ
       100       110       120       130       140       150       

        180       190       200       210       220       230      
pF1KB7 KEKLEFMLVAHGPVCKISPEERRSPPAPGLQPMRSGGGSVGAVVVKQEPLEEDSPSSSSA
       ::.::..: :: :.::: ::                :.. :           :. :.:..
CCDS81 KERLELVLEAHRPICKI-PE----------------GAKEG-----------DTGSTSGT
       160       170                        180                    

        240       250        260       270       280       290     
pF1KB7 GLDKAQRSVIKPISIAGGFYGE-EPLHTPIVVTSTPAVTPGTSNLVFTYPSVLEQESPAS
       .   :    .  ::.. :   : : :::: ..: ::..:: : .:::::::        .
CCDS81 SSPPAPCRPVPCISLSPGPVLEPEALHTPTLMT-TPSLTPFTPSLVFTYPS--------T
     190       200       210       220        230               240

         300       310        320      
pF1KB7 PSESCSKAHRRSSSS-GDQSSDSLNSPTLLAL
       : : :..:::.:::: :: ::: :.:::::::
CCDS81 P-EPCASAHRKSSSSSGDPSSDPLGSPTLLAL
               250       260       270 

>>CCDS12664.1 FOSB gene_id:2354|Hs108|chr19               (338 aa)
 initn: 638 init1: 433 opt: 487  Z-score: 373.4  bits: 77.4 E(32554): 1.8e-14
Smith-Waterman score: 722; 44.0% identity (63.4% similar) in 366 aa overlap (1-326:1-338)

               10        20                 30         40        50
pF1KB7 MYQDYPGNFDTSSRGSSGSPAHAESYSS---------GGGGQQKFRV-DMPGSGSAFIPT
       :.: .::..:..:: ::.  :...  ::         ....:.   . .::::   :.::
CCDS12 MFQAFPGDYDSGSRCSSSPSAESQYLSSVDSFGSPPTAAASQECAGLGEMPGS---FVPT
               10        20        30        40        50          

               60        70                 80         90       100
pF1KB7 INAITTSQDLQWMVQPTVITSM---------SNPYPRSHPYSPLPGLA-SVPGHMALPRP
       ..::::::::::.::::.:.::         :.: :   ::. .:: . :.::  .    
CCDS12 VTAITTSQDLQWLVQPTLISSMAQSQGQPLASQP-PVVDPYD-MPGTSYSTPGMSGYSSG
        60        70        80        90         100       110     

                   110                  120       130       140    
pF1KB7 GVI-----KTIGTTVG-----------RRRRDEQLSPEEEEKRRIRRERNKLAAAKCRNR
       :.      .: ::: :           :: :.: :.::::::::.:::::::::::::::
CCDS12 GASGSGGPSTSGTTSGPGPARPARARPRRPREETLTPEEEEKRRVRRERNKLAAAKCRNR
         120       130       140       150       160       170     

          150       160       170       180       190       200    
pF1KB7 RRELTEKLQAETEELEEEKSGLQKEIAELQKEKEKLEFMLVAHGPVCKISPEERRSPPAP
       :::::..:::::..:::::. :..::::::::::.:::.:::: : :::  ::    :.:
CCDS12 RRELTDRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEE---GPGP
         180       190       200       210       220          230  

           210       220       230       240       250       260   
pF1KB7 G-LQPMRSGGGSVGAVVVKQEPLEEDSPSSSSAGLDKAQRSVIKPISIAGGFYGEEPLHT
       : :  .:.  ::. :   :.. .    :      :   : :   : .......     :.
CCDS12 GPLAEVRDLPGSAPA---KEDGFSWLLPPPPPPPLP-FQTSQDAPPNLTASLF----THS
            240          250       260        270       280        

           270          280       290       300       310       320
pF1KB7 PIVVTSTP--AVTPG-TSNLVFTYPSVLEQESPASPSESCSKAHRRSSSSGDQSSDSLNS
        . : . :  .:.:. ::..:.: : :           . . :.: :.:  :: :: :::
CCDS12 EVQVLGDPFPVVNPSYTSSFVLTCPEV----------SAFAGAQRTSGS--DQPSDPLNS
          290       300       310                 320         330  

             
pF1KB7 PTLLAL
       :.::::
CCDS12 PSLLAL
             




326 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:23:00 2016 done: Sat Nov  5 10:23:01 2016
 Total Scan time:  3.090 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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