GENSCAN 1.0	Date run:  5-Nov-116	Time: 12:28:45

Sequence gi568815595r:125347782_125620172 : 272391 bp : 41.66% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   9515   9887  373  2  1  140   55   170 0.228  12.08
 1.02 PlyA +   9913   9918    6                               1.05

 2.22 PlyA -  12680  12675    6                               1.05
 2.21 Term -  27759  27346  414  0  0   92   47   196 0.155  10.18
 2.20 Intr -  41923  41832   92  2  2   94   29    66 0.003   0.09
 2.19 Intr -  49958  49769  190  2  1   31   99   128 0.887   6.44
 2.18 Intr -  52701  52564  138  0  0  103  100   113 0.979  13.74
 2.17 Intr -  55502  55408   95  0  2   96    7   116 0.794   3.06
 2.16 Intr -  69622  69537   86  0  2   69   58    50 0.121  -1.36
 2.15 Intr -  86291  86212   80  2  2   88   94    67 0.278   4.73
 2.14 Intr -  94434  94383   52  2  1   74   80    66 0.624   2.39
 2.13 Intr -  94632  94496  137  0  2  111   82    14 0.532   1.55
 2.12 Intr - 103638 103524  115  2  1   88   97   132 0.971  13.63
 2.11 Intr - 106174 106029  146  1  2  104  103   117 0.989  12.96
 2.10 Intr - 106642 106511  132  1  0   71   35    81 0.660   1.02
 2.09 Intr - 109584 109485  100  2  1   46   84   138 0.742   8.39
 2.08 Intr - 113079 112990   90  2  0   83  115    88 0.949   9.19
 2.07 Intr - 121738 121673   66  0  0   77   75    57 0.303   0.40
 2.06 Intr - 128975 128914   62  2  2   42  115    50 0.342  -0.29
 2.05 Intr - 149607 149560   48  0  0   62  116    19 0.429   0.06
 2.04 Intr - 150202 150053  150  1  0   76   68    55 0.657   1.74
 2.03 Intr - 150413 150278  136  1  1  126   94    32 0.852   7.25
 2.02 Intr - 156963 156842  122  0  2   68   98    92 0.448   6.57
 2.01 Init - 172391 172251  141  2  0  112   89   188 0.743  21.48
 2.00 Prom - 173944 173905   40                              -4.75

 3.15 PlyA - 177682 177677    6                               1.05
 3.14 Term - 180275 180078  198  2  0  -69   40   216 0.131  -2.48
 3.13 Intr - 184233 184080  154  2  1   57   69   149 0.933   9.05
 3.12 Intr - 190852 190670  183  0  0   89   91   121 0.980  10.48
 3.11 Intr - 199811 199625  187  0  1   93  103   125 0.928  12.33
 3.10 Intr - 204898 204400  499  1  1   92  115   301 0.971  24.83
 3.09 Intr - 212738 212598  141  2  0   40   89   157 0.953  10.63
 3.08 Intr - 216062 215917  146  0  2   44   86   172 0.839  11.68
 3.07 Intr - 219814 219613  202  1  1   66  111    97 0.483   7.74
 3.06 Intr - 231258 231179   80  1  2   88   95    69 0.694   5.95
 3.05 Intr - 232259 232084  176  1  2   25   64   131 0.500   3.06
 3.04 Intr - 245434 245305  130  2  1   50   36    97 0.132  -0.47
 3.03 Intr - 247045 246818  228  2  0   14   75   262 0.553  14.42
 3.02 Intr - 247932 247837   96  1  0   81   55    70 0.494   2.06
 3.01 Init - 252997 252943   55  1  1  110   95     1 0.497   4.50
 3.00 Prom - 255285 255246   40                              -7.55

 4.00 Prom + 255487 255526   40                             -12.33
 4.01 Init + 256500 256549   50  2  2   98   57    36 0.763   1.97
 4.02 Intr + 258003 258203  201  0  0   80  109   179 0.718  16.68
 4.03 Intr + 269050 269260  211  1  1    1   87   180 0.625   7.19
 4.04 Intr + 269402 269616  215  1  2   53   76   233 0.950  15.19
 4.05 Intr + 269734 269954  221  1  2   19   27   186 0.948   2.62
 4.06 Term + 270052 270497  446  2  2   72   46   210 0.972   9.61
 4.07 PlyA + 270532 270537    6                              -0.45

 5.02 PlyA - 270734 270729    6                               1.05
 5.01 Sngl - 271219 270977  243  1  0   76   34   191 0.762   7.33

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  49391  49309   83  0  2  110   41    90 0.918   3.38


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:125347782_125620172|GENSCAN_predicted_peptide_1|124_aa
XGAHAHRHTHARTHLHTKGSHGRCWSLHTGTLARDTHTPPKKRRAGFARRWAKARPPPLP
GPAHFRERPLAQPRAKSARTQAGGSPPATTQLHFAVPQPPTAQPAQSRPRSWPNRAWAAK
AQGI

>gi568815595r:125347782_125620172|GENSCAN_predicted_CDS_1|375_bp
nnaggggcgcacgcgcacagacacacgcacgcacgcacgcacttacacacaaaaggaagt
catggaaggtgctggtccctgcatacaggcacactcgcgcgggacacacacacacccccc
aaaaagaggcgtgcggggttcgccagacggtgggcaaaagcccgtcctcccccccttcca
gggcctgctcacttcagggagcgcccactcgcccagccacgggccaagagcgcacggacc
caggcgggcggcagcccacccgccaccacgcagctccacttcgctgttccacagccacca
accgcacagccggcacagtcccgcccgcgcagctggcccaatcgggcctgggctgcaaaa
gcccagggaatatga

>gi568815595r:125347782_125620172|GENSCAN_predicted_peptide_2|863_aa
MEQAPPDPERQLQPAPLEPLGSPDAGLGAAVGKEAEGAGEESSGVDTMTHNNFWLKKIEI
SVSEAEKRTGRNAMNMQETYTAYLIETRSVEHTDGQSVLTDSLWRRYSEFELLRSYLLVY
YPHIVVPPLPEKRAEFVWHKLSADNMDPDFVERRRIGLENFLLRIASHPILCRDKIFYLF
LTQEGNWKETVNETGFQLKRVADRLYGVYKVHGNYGRVFSEWSAIEKEMGDGLQSAGHHM
DVYASSIDDILEDEEHYADQLKEYLFYAEALRAVCRKHELMQYDLEMAAQDLASKKQQCE
ELVTGIISGIRFSQGTHNLDPSHAQFTIGFVLLRESNASAADLTGGRAQTVRTFSLKGMT
TKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVKNAWADIERFKEQKNRDLK
EALISYAVMQISMCKKRKPLLPVSYASFQKLPIIYRHVHLPQQHTQMGEYSTHFTYLEDR
PSNGNDSDFQFGAITDDGQAVNLQVWYSKCGTGPAESAPPGILLESCTHRPRSGFLAAVL
TAVVMGSSRLRVVGRSMCEDVCKAFRWYLSSSSKLWGNQNVDINLLSQGFRERSAEYRVW
KETSSERFPRVADQRQLCPSEGEGYLESWHLKSNPYLQHKLLIACCNDHFLGPPVPAALD
TVDSLPLPAALLILHNPIPFSGYPSAIPPLSMALFVLTLGNLELIAGICWPSHILPDLLD
AAGESDAQPGGPAARVQLPRPPWAGDTQAPESKPRCVFPARSLRQTRAGAAERFPCAGLP
TMHRAGSGGDRGGALAAACLRLYCSGRRKRRRKRRRRRRGRKRRKAQGWELLPKLPQQKF
SPLPPSPPLKAPRKVGAAAACSR

>gi568815595r:125347782_125620172|GENSCAN_predicted_CDS_2|2592_bp
atggagcaggcacctccggaccccgagcggcagctccagccggcgcccttggagccgctg
ggctccccagacgctgggctgggggctgcggtcggcaaggaagcggagggggccggagaa
gagagctctggggtcgacacgatgacacacaataatttttggttgaagaagatagaaatc
agtgtttcagaagcagaaaaacgaactggaagaaatgccatgaacatgcaagaaacatat
actgcttacctcattgaaacaaggtcagttgaacataccgatggtcagagtgtcctaaca
gactcactatggcggcgatatagtgaatttgagttgttgagaagctaccttttagtttac
tatccacatattgttgtgccacctctgccagaaaaacgggcagaatttgtttggcataaa
ctctctgctgacaacatggatccagattttgtggagaggcgacggattggtttagaaaac
tttctcttgaggattgcttcacatcccatcctttgtagagacaaaatcttctatctgttt
ttaacacaggaaggtaactggaaggagactgtgaatgaaactgggtttcagctgaagaga
gtagcagatcgactctatggtgtatataaagtacatgggaattatggtcgagttttcagt
gaatggagtgccatagaaaaagaaatgggtgatggactgcagagtgctggtcatcatatg
gatgtgtatgcatcttctattgatgatattttggaagatgaagaacattatgcagatcag
ttaaaagagtatcttttttatgcagaagcattgcgggctgtgtgcaggaaacatgaactt
atgcagtatgacttggagatggctgctcaggacttagcatccaagaagcagcagtgtgag
gaactggtaactgggatcatctcaggcattagattttcacaaggaacacacaacctggat
ccctcacatgcgcagttcacaatagggttcgtgctcctaagagaatctaatgcctctgct
gctgatctgacaggaggcagagctcagactgtgagaacattctctttgaagggaatgact
accaagctctttggtcaagaaactccagagcagagagaagccagaataaaggtgctagaa
gaacaaataaatgaaggagaacaacagctaaagtctaaaaatctggaaggcagagaattt
gtgaaaaacgcatgggctgatattgaacgcttcaaagaacaaaagaaccgagacttaaag
gaggccctcataagctatgcagtcatgcagatcagtatgtgcaaaaagaggaaaccactg
ttaccagtttcctatgcatccttccagaaattacctatcatataccgacacgtacacctt
ccccaacagcacacacaaatgggggaatacagtacacacttcacatatctggaagatcgg
cccagtaatggaaatgacagtgatttccagtttggggctatcacagatgatggccaggcg
gtgaatctccaagtgtggtactccaagtgtggtactgggccagcagaatctgctccacct
gggatcttgttagaaagctgcacccacaggccaagatctggattcctggctgctgtattg
acagctgtggttatggggtcaagcagattgagggtagttggtaggtcaatgtgtgaagat
gtctgcaaggccttccgctggtatctgagttcttcttcgaagctctggggaaaccagaat
gtggacataaatcttttaagtcagggctttagagaacgctctgcagaataccgtgtctgg
aaagagacaagttcagagagatttccaagggtagcagaccagaggcagctttgcccttca
gaaggtgaaggctacttggagagctggcatctgaagagtaacccatatcttcaacataag
cttctgattgcctgttgcaatgaccatttcttaggccctcctgtccctgcagcactggac
actgtggattcccttcctcttcctgctgctctcctgatattgcataatccgattcccttc
agtggctaccccagtgccatccctcctttatccatggccctctttgtgctgaccttagga
aaccttgagcttattgcgggtatttgttggccttcccatattctacctgacctgctggat
gctgctggagaaagtgacgcccagcctggggggcctgcggctcgggtccagcttccacgg
ccaccctgggctggtgacacgcaggcgccggaatcgaagccacgctgtgtctttccagcc
aggtctctgcgccagacgagggcgggcgccgcggagcgcttcccgtgtgcggggcttccc
acaatgcaccgggccggcagtggcggcgaccgcggcggcgctctagctgcggcatgtctg
cgtctctactgctctgggaggaggaagagaaggaggaagaggaggaggaggaggaggggg
aggaagaggagaaaggcgcaggggtgggagctgttgccgaagctgccacagcaaaagttc
tcccccctccccccttcccctcctctcaaggcccctagaaaggttggagctgccgccgcc
tgcagtcggtga

>gi568815595r:125347782_125620172|GENSCAN_predicted_peptide_3|824_aa
MALGIYIFTLTPTNWVISASRPATSSQSLRLLQGPAALTQDGARRFGCEGKGQVDFGVKM
QGGEPVSTMKVSESEGKLEGQATAVTPNKNSSCGGGISSSSSSRGGSAKGWQYRYAPFSK
IISRGGGAAGPLSVALRPDLLWGCGWGAAAALAFTFGSGESRESIKLVVRFFVLNNEAGL
LEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVS
RLQICTQHHTEAIGKMMSHAEGQQRDLIRRIECLPTSGHLSSLDQDLLMLKATSMATMNC
LNDCFHILQLQHASHQKGSLPSGTTIEWLEPKISLSNHYKNGADQPFATDQSKPVAVPEE
QPVAESGLLAREPEEINADDEIEDTCDHKEDDLGAVEEQRSVILHLLSQLKLGMDLTRVV
LPTFILEKRSLLEMYADFMSHPDLFIAITNGATAEDRMIRFVEYYLTSFHEGRKGAIAKK
PYNPIIGETFHCSWKMPKSEVASSVFSSSSTQGVTNHAPLSGESLTQVGSDCYTVRFVAE
QVSHHPPVSGFYAECTERKMCVNAHVWTKSKFLGMSIGVTMVGEGILSLLEHGEEYTFSL
PCAYARSILTVPWVELGGKVSVNCAKTGYSASITFHTKPFYGGKLHRVTAEVKHNITNTV
VCRVQGEWNSVLEFTYSNGETKYVDLTKLAVTKKRVRPLEKQDPFESRRLWKNVTDSLRE
SEIDKATEHKHTLEERQRTEERHRTETGTPWKTKYFIKEEAKGTSYMVAARENEEDAKVE
TPDKTVRSRRTYSLPREQYGENCPHDSNYLPQHVGIVEWKYNSR

>gi568815595r:125347782_125620172|GENSCAN_predicted_CDS_3|2475_bp
atggccttaggtatctacattttcacactgacacccacaaactgggtgatttcagccagt
cgcccagctaccagctcccagagcctccgcctccttcagggacccgccgccctgacccaa
gatggcgccagacgcttcggctgtgagggaaaagggcaagtggactttggcgttaagatg
caggggggtgaaccagtgtccacaatgaaagtctcggagagcgaaggaaagctggagggc
caggccacagcggtgaccccgaacaagaacagcagctgtggaggtggaatcagtagcagc
agcagcagccgcggtggcagtgcaaaaggctggcagtacaggtatgctcctttctccaaa
attatttcccgaggtggaggggccgcgggtcccctgtccgtggcgcttcgtcctgacctg
ctatggggctgtgggtggggcgccgccgcggccctggcattcacatttgggtctggagag
agccgggagtctattaagttggttgtgaggttttttgttttaaacaatgaagctgggctg
ttggagtactttgtgaatgaacagtctagaaatcagaaacctagaggaactttgcagctt
gcaggagctgtaatatcacccagtgatgaggattctcacaccttcactgtaaacgctgcc
agtggggaacaatataaactcagagctacagatgcaaaagagcgacagcactgggttagc
agacttcagatatgtacacagcatcatactgaagctattggaaagatgatgtctcatgct
gaaggacaacaaagagacttaattagacgaattgaatgccttcctacttctggccatctt
agttccttggaccaggatctcttaatgctcaaagctacttccatggcaactatgaactgc
ttaaatgactgctttcatattctccagttacagcatgcatcacatcagaagggctcattg
ccttcaggaacgacaatcgagtggttagaaccaaagatatctttatcaaaccactataaa
aatggagctgaccagccctttgcaactgatcagagtaagccggtggcagtcccagaagag
cagcctgttgcagaatctggactattagcgagggagcctgaagaaataaatgcagatgat
gagatagaggatacatgtgaccacaaagaggatgacctgggagctgtagaagaacaacgt
agtgtcatcctacatctcttgtcacagcttaagctgggcatggatttaacaagagtggtg
cttcctacatttatcctagagaagcgttccttgctggaaatgtatgcagactttatgtct
catccagacctatttatagccatcactaatggagccacagctgaggacagaatgattcgc
tttgttgagtactaccttacctcatttcatgaaggccgtaagggagccattgctaaaaaa
ccatacaatcctatcattggagaaacatttcactgttcctggaagatgccaaaaagcgag
gtagcatccagtgtttttagcagttcttccacccagggagtcacaaatcatgctccttta
tcgggggagtctttgacccaggtgggatcagactgttacacagtcagatttgttgctgag
caggtttctcatcatcctccagtctcaggattttatgcagaatgtacagagaggaagatg
tgtgtaaatgcgcatgtctggactaagagcaagttcttaggcatgtcaataggcgtgaca
atggttggagaaggtatccttagtctgttggagcatggagaagagtacacattttctcta
ccctgtgcatatgctcggtcaattttgactgttccttgggtagaactgggtggcaaagtc
agtgtcaactgtgcaaaaactggatattcagccagcatcacttttcataccaagccattt
tatggtggcaaactgcatcgggttacagctgaagtaaagcacaacatcaccaacactgtg
gtatgcagagtgcaaggggaatggaatagtgttcttgagttcacatatagcaatggagag
acaaagtatgtggacttgactaaattggcagtgacgaagaaaagagtgagacctctggag
aagcaggatccatttgaatccaggcgattgtggaaaaatgtgacagactcgctgagagaa
tctgaaattgataaggccacagagcataagcataccctggaagaacgtcagaggactgaa
gaaaggcatcgtactgaaacaggcacaccttggaaaaccaaatattttattaaagaggag
gcgaaaggcacttcttacatggtggcagcaagagaaaatgaggaagatgcaaaagtggaa
acccctgataaaaccgtcagatctcgtaggacttattcactaccacgagaacagtatggg
gaaaactgcccccatgattcaaattacctcccacaacacgtgggaattgtggagtggaag
tacaattcaagatga

>gi568815595r:125347782_125620172|GENSCAN_predicted_peptide_4|447_aa
MLGHYSFKMELDNHTESLRGRARVQVFENASVRATKSDLPRSSLWSRRKTSVSATASVSA
TNLISMVQGQLRVLGQEGNLLLHRTSLKDNGEGKSSQWTELRAVHLVVHFAWKKKWPDVR
LYTDSWAVTSGLAGWSGTWKKHDWKMVTKKCGEEPSLSSPNGPMNKVAMVAGMEVIHGLS
NKDFRLPRLTWLRPLPSAQFASSRDQHRALDMAPFLGVISQLPGGRLPSVDSWNALSTIM
VFQYSIASDQGTNLMAKEVRQWAHARGIHWSYRVPQHPEAAGLIEQWNGLLKSQLQHRLA
SIHRSRNQGVEVKVAPLTITPSDLLAKFLLSVPMTFCSADLEVLVPEGGMLPPRDTTMIP
SNWKLRLPPEHFWLLLPLSQQAKKGVTVLAGVTDYQDEIRLLPHNGGKEEYAWNTGDPLG
CLLVLPCPVIKVNGKVQQPNPGRTTNG

>gi568815595r:125347782_125620172|GENSCAN_predicted_CDS_4|1344_bp
atgcttggccactacagctttaaaatggaattggacaaccatactgagagtctaagagga
agagcaagagtgcaggttttcgaaaatgcatcggtaagggccactaaatctgaccttcct
cggtcctctttgtggtctaggaggaaaactagtgtttctgctactgcttcagtgagcgca
actaatctgatcagcatggtccagggacagttgagagttcttgggcaagaggggaatctg
ctgctgcatcgaacatccctgaaggacaatggtgaggggaaatcatctcagtggacagaa
cttcgagcagtgcacctggttgtgcactttgcatggaagaagaaatggccagatgtgcga
ttatatacagattcatgggctgtaaccagtggtttggctggatggtcagggacttggaag
aagcacgattggaaaatggtaacaaagaaatgtggggaagagccatccctgtcatcgccc
aatgggcccatgaacaaagtggccatggtagcagggatggaggttattcatgggctcagc
aacaaggacttccgcttaccaaggctgacctggctacgaccactgccaagtgcccagttt
gccagcagcagagaccaacaccgagcccttgatatggcacccttcctcggggtgatcagc
cagctacctggtggcagactgccatccgtggactcatggaatgccttatccaccatcatg
gtattccagtacagcattgcctctgaccaaggcactaacttaatggctaaagaagtgcgg
cagtgggctcatgctcgtggaattcactggtcttaccgtgttccccaacatcctgaagca
gctggattgatagaacagtggaatggccttttgaagtcacaattacaacaccgactagcc
agtattcacaggtccaggaatcaaggggtggaagtgaaagtggcaccactcaccatcacc
cctagtgacctgctagcaaaatttttgctttctgttcccatgacattttgttctgctgac
ctagaggtcttagttccagagggaggaatgctgccaccaagagacacaacaatgattcca
tcaaactggaagttaagattgccacctgaacacttttggctcctccttcctctaagtcaa
caggctaagaaaggagttacagtgttggctggggtgactgactatcaggatgaaatcaga
ctactaccccacaatggaggtaaggaagagtatgcgtggaatacaggagatcccttaggg
tgtctcttagtattaccatgccctgtgattaaggtcaacgggaaagtacaacaacccaat
ccaggcaggactacaaatggctga

>gi568815595r:125347782_125620172|GENSCAN_predicted_peptide_5|80_aa
MGERRQPEDSADKAYPTFFTCFILATLAADCMVPIDTEGGSPSPSPPTQMSISSGNTLTD
NPETILYQPSRILQSTQVDT

>gi568815595r:125347782_125620172|GENSCAN_predicted_CDS_5|243_bp
atgggagaaaggaggcagccagaagactcagcagacaaagcttatcccaccttcttcacc
tgcttcattctagccacactggcagcagattgtatggtgcccatcgacactgagggtggg
tctccctctcccagtccaccgacacaaatgtcaatctcctctggcaacaccctcacagac
aacccagaaacaatactttaccagccatctaggatccttcaatctactcaagttgacacc
taa