GENSCAN 1.0	Date run:  7-Nov-116	Time: 01:06:45

Sequence gi568815581r:19809181_20068463 : 259283 bp : 42.81% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 Intr -     86     24   63  0  0   88  103    10 0.005   0.27
 1.06 Intr -   1258   1198   61  1  1  121   75    47 0.008   4.09
 1.05 Intr -   8748   8619  130  2  1   -8   68    90 0.002  -2.82
 1.04 Intr -  16002  15914   89  0  2   88  100    49 0.042   3.95
 1.03 Intr -  34042  33941  102  1  0   89   96    10 0.628   1.35
 1.02 Intr -  36197  36124   74  0  2   49  101    73 0.939   2.91
 1.01 Init -  37788  37557  232  0  1   51   67   275 0.288  20.17
 1.00 Prom -  41291  41252   40                              -4.15

 2.00 Prom +  50398  50437   40                              -4.55
 2.01 Init +  58236  58542  307  2  1   79   10   218 0.472   8.60
 2.02 Term +  58607  59064  458  0  2   67   41   195 0.312   7.00
 2.03 PlyA +  59487  59492    6                               1.05

 3.23 PlyA -  62604  62599    6                               1.05
 3.22 Term -  66877  66770  108  1  0   48   46   102 0.066  -0.47
 3.21 Intr -  81451  80788  664  0  1   62   65   234 0.435   9.34
 3.20 Intr -  82173  81892  282  2  0   90   92   160 0.789  12.21
 3.19 Intr -  82548  82469   80  0  2   33  110    93 0.753   3.43
 3.18 Intr -  96050  95966   85  1  1   95   85    32 0.013   2.50
 3.17 Intr -  96601  96531   71  1  2   46   76    63 0.009  -2.04
 3.16 Intr - 100096 100001   96  1  0   68  116   112 0.916  11.29
 3.15 Intr - 100798 100746   53  2  2   86   84    27 0.723  -0.19
 3.14 Intr - 110938 110856   83  0  2   62   76   107 0.227   5.26
 3.13 Intr - 115337 115228  110  2  2   63  102    86 0.252   5.66
 3.12 Intr - 126671 126537  135  2  0   16   52   136 0.067   2.64
 3.11 Intr - 127250 126956  295  1  1   74   84   210 0.815  15.29
 3.10 Intr - 130669 130533  137  1  2   80   89   153 0.999  13.05
 3.09 Intr - 131830 131707  124  0  1   91   88    42 0.999   4.17
 3.08 Intr - 132730 132646   85  2  1   72   89   101 0.998   6.56
 3.07 Intr - 137969 137841  129  0  0    2   38   182 0.195   4.35
 3.06 Intr - 138325 138227   99  2  0  130   87    81 0.999  11.36
 3.05 Intr - 139449 139222  228  1  0   65   38   110 0.545   0.62
 3.04 Intr - 149391 148834  558  1  0  111   87   217 0.945  15.77
 3.03 Intr - 153842 153660  183  0  0   28  106    69 0.243   1.54
 3.02 Intr - 159281 159234   48  0  0   69  115    55 0.540   4.03
 3.01 Init - 161007 160929   79  0  1   86   96    30 0.637   4.87
 3.00 Prom - 161991 161952   40                              -3.65

 4.03 PlyA - 162449 162444    6                               1.05
 4.02 Term - 169150 169050  101  2  2   43   53   143 0.427   3.61
 4.01 Init - 171554 171446  109  2  1   54   78   155 0.868  11.53
 4.00 Prom - 172551 172512   40                              -6.05

 5.00 Prom + 173910 173949   40                              -4.25
 5.01 Init + 182201 182336  136  1  1   70   77    66 0.709   4.07
 5.02 Term + 187411 187547  137  2  2  110   48   107 0.804   6.10
 5.03 PlyA + 188490 188495    6                               1.05

 6.06 PlyA - 191722 191717    6                               1.05
 6.05 Term - 200594 199816  779  0  2   40   41   398 0.682  22.84
 6.04 Intr - 207743 207533  211  2  1   69   59   144 0.790   7.16
 6.03 Intr - 208223 208085  139  1  1   23   85   108 0.166   3.55
 6.02 Intr - 213609 213527   83  0  2   79   94    21 0.013  -0.68
 6.01 Init - 227985 227929   57  0  0   74   86    44 0.849   4.16
 6.00 Prom - 228291 228252   40                              -2.85

 7.02 PlyA - 228662 228657    6                               1.05
 7.01 Sngl - 238176 237985  192  0  0   72   48   132 0.757   2.49
 7.00 Prom - 240549 240510   40                              -2.85

 8.02 PlyA - 240637 240632    6                               1.05
 8.01 Term - 247344 247191  154  2  1   79   45   161 0.750   7.31

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  96050  95910  141  2  0   95   54   133 0.964   7.55
S.002 Term - 126671 126498  174  2  0   16   44   202 0.902   5.38
S.003 Term - 220910 220800  111  2  0   64   40    98 0.861   0.18


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:19809181_20068463|GENSCAN_predicted_peptide_1|251_aa
MQMVFDFVCLNIYVTPFVPAKGTLSEDTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILL
SYANRRKSSVSGIRIKIADFGFARYLHSNMMAATLCGSPMYMAPEVIMSQHYDAKADLWS
IGTVIYQCLVGKPPFQLAQFQCPCILVLSLEAPVAALHLVVLLLHQYKVSSKSDKERLCQ
VHVTHMKISGISDRYHGTVTFKGAAAVNQVICQWGLLADVLQMNSWCVEGPDSNHILLSV
SMNLTTLDTSX

>gi568815581r:19809181_20068463|GENSCAN_predicted_CDS_1|753_bp
atgcagatggtatttgattttgtgtgcttaaatatttacgtgactccttttgtaccagcg
aaagggactctcagtgaagacacgatcagagtgtttctgcatcagattgctgctgccatg
cgaatcctgcacagcaaaggaatcatccacagagatctcaaaccacagaacatcttgctg
tcctatgccaatcgcagaaaatcaagtgtcagtggtattcgcatcaaaatagcggatttt
ggttttgctcgttacctacatagtaacatgatggctgcaacactgtgtggatccccgatg
tacatggctcctgaggttattatgtctcaacattatgatgctaaggctgacttgtggagc
ataggaacagtgatataccaatgcctagttggaaaaccaccttttcagcttgcccagttc
cagtgcccatgtattctggttctgtctctggaagctcctgtggcagctctccatcttgtc
gttttgcttctccaccaatacaaagtctcttcaaaaagtgataaggagagattgtgtcaa
gtgcatgtcacacacatgaaaataagtggtatcagtgaccgataccatggcacagtgaca
ttcaaaggagcagcagcagtgaaccaggtgatatgccagtggggactgctggcagacgtg
cttcaaatgaattcttggtgtgtggagggccctgatagtaaccacattctgctctctgtt
tctatgaatttgactactttagatacctcatnn

>gi568815581r:19809181_20068463|GENSCAN_predicted_peptide_2|254_aa
MAAPPGHTADGRAAQCGAGISTAAPRARSAPACGGSGAAAAPGPGGLSCRETGAETGEAA
ARSQGQRGPARPLPLMARPAAGRWLSGEAASALPGQGCRHRHSRRASSALPARGAAATAT
AAALEPAPPRPRASPPRGGAQRPRARYPLPRDWLPSATSARLEGRSASRLPPPGKGVRPG
LGARSWADPRPLLRRGRRARPAAATAGYGLRAPFWAWGADSSRPRPGLQAAGRRTSEKRV
LNPSCRQDGIICAG

>gi568815581r:19809181_20068463|GENSCAN_predicted_CDS_2|765_bp
atggccgcgcccccggggcacacagcggacgggcgggcggcgcagtgcggcgcaggtatc
agcaccgcggctccgcgggcccggagcgcgccagcgtgcggcgggtctggggcagccgca
gccccgggcccgggcggactctcatgccgagagaccggagcggaaactggggaagctgcc
gcgcggagccagggtcagcgaggcccggcccggcccctgccgctcatggcccggcctgcc
gccggccgctggctgtctggcgaagcggcctcggcgctgccgggccaggggtgccgtcac
cgtcactctcgtcgggcctcctcggccctccccgctcggggcgctgctgcgacggcgacg
gccgccgccctagaacccgcaccgccgcggccccgcgcttccccgcctcgcggcggcgcc
caacgccctcgcgcgcgctacccgctcccgcgcgactggctgccctccgcgacgtccgcg
cgccttgaaggccgcagcgccagccggctccctccgccggggaaaggagtgcggccaggg
cttggcgcccgcagctgggcagatcctcggccgctcctgaggcggggacgaagggcgcga
cccgctgcggccacagcgggttacgggctgcgggctccgttctgggcctggggagcagat
tcgagccgaccacgccccgggctccaggccgctgggaggcggacttcagagaagcgggtc
ttgaaccccagctgcaggcaggacgggattatctgcgcagggtag

>gi568815581r:19809181_20068463|GENSCAN_predicted_peptide_3|1243_aa
MKTEVGTGLGEDDMFPFRQVELWKMAVKGKEQEKTSDVKSIKASISVHSPQKSTKNHALL
EAAGPSHVAINAISANMDSFSSSRTATLKKQPSHMEAAHFGDLGRSCLDYQTQETKSSLS
KTLEQVLHDTIVLPYFIQFMELRRMEHLVKFWLEAESFHSTTWSRIRAHSLNTVKQSSLA
EPVSPSKKHETTASFLTDSLDKRLEDSGSAQLFMTHSEGIDLNNRTNSTQNHLLLSQECD
SAHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKELSGKLMKKSQGFRFPILQ
HTSCSYVNLCGHDFFFLGLQFLLSESRILGAAVIAAVAALMLPGSRRRERNKTKQPRGFP
PLSLIRIEQDAVNTFTKYISPDAAKPIPITEAMRNDIIAGPAGGYANRHRPPDGLAGSPA
PVHEVGGTETSGVGSPVRLKAARICGEDGQVDPNCFVLAQSIVFSAMEQEHFSEFLRSHH
FCKYQIEVLTSGTVYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQSQLAAKKG
QYDGQEAQNDAMILYDKYFSLQATHPLGFDDVVRLEIESNICREGGPLPNCFTTPLRQAW
TTMEKVTQNFKRIKLQEVLLVELIKYKVGKPSRIAQWKLKQSSKVIKSRGLESGLKTVNC
KTASDRSFRRFPEGGIVIKGDDGSMRVTAPEDLPVGQDVESSVKKASIKILKNFDEAIIV
DAASLDPESLYQRTYAGKMTFGRVSDLGQFIRESEPEPDVRKSKGSMFSQAMKKWVQGNT
DEAQEELAWKIAKMIVSDIMQQAQYDQPLEKSTKVSQPHREPGSFEWQRGASSFSGTGIV
RDSLTALLLSWLLHRDHTAISRTAQLWLKTDTARSPWKPTGPSQTLWVTYSGGSKPSSHP
PLVSPHLNPQVWDTSTPSLVTDHARLTIPLKPNHPYSNQRQYPIPWHALKGLKPVITRLL
QHGLLKPINSPYNSPILPVQKPDKSYSSHNFQNLFSSSHLTHILSAPQLLQLCSVFVESP
TITIVPGPDFNPNSHIIMDIRTDPHDCISLIHLTVTTFPHISVFPVSHHDHTWFIDGSST
RPNHHSPAKAGYAIVSSTSIIEATALPASTTSQQAKLIALTWALTLAKGLHVNIYTDSKY
AFRILHHHAVTWAERNFLTTQESSIIIASLIKTLLKVALLPKEAGVIHCKGHQKASDVIA
QGNAYADKQSLNIIISISTDGTEAQRGEGKPKVLQPGCGTIWN

>gi568815581r:19809181_20068463|GENSCAN_predicted_CDS_3|3732_bp
atgaagactgaggtaggaacaggtttgggagaagatgacatgttcccttttagacaagtg
gaattatggaagatggcagtgaaaggcaaagaacaagagaagacctcagatgtgaagtcc
attaaagcttcaatatccgtacattccccacaaaaaagcactaaaaatcatgccttgctg
gaggctgcaggaccaagtcatgttgcaatcaatgccatttctgccaacatggactccttt
tcaagtagcaggacagccacacttaagaagcagccaagccacatggaggccgctcatttt
ggtgacctgggcagatcttgtctggactaccagactcaagagaccaaatcaagcctttct
aagacccttgaacaagtcttgcacgacactattgtcctcccttacttcattcaattcatg
gaacttcggcgaatggagcatttggtgaaattttggttagaggctgaaagttttcattca
acaacttggtcgcgaataagagcacacagtctaaacacagtgaagcagagctcactggct
gagcctgtctctccatctaaaaagcatgaaactacagcgtcttttttaactgattctctt
gataagagattggaggattctggctcagcacagttgtttatgactcattcagaaggaatt
gacctgaataatagaactaacagcactcagaatcacttgctgctttcccaggaatgtgac
agtgcccattctctccgtcttgaaatggccagagcaggaactcaccaagtttccatggaa
acccaagaatcttcctctacacttacagtagccagtagaaatagtcccgcttctccacta
aaagaattgtcaggaaaactaatgaaaaaaagtcagggctttagattccctatacttcag
cacacttcctgtagctatgtcaacctctgtggccacgacttcttcttcttgggactgcag
tttctcttgtcagaaagtaggattcttggagctgctgtcattgctgctgtggctgctctg
atgctgcctgggagtcgaaggagagaaaggaacaaaacaaaacaacccaggggatttcct
ccactctctttgatccgtatagaacaagatgcagtgaatacttttaccaaatatatatct
ccagatgctgctaaaccaataccaattacagaagcaatgagaaatgacatcatagccggg
ccggcgggcggctacgctaaccggcacagaccaccggatggactggccggcagccccgca
ccagtgcacgaagtgggcgggacagaaacttctggggttggaagtccagtgaggctaaaa
gccgcaaggatttgtggagaagatggacaggtggatcccaactgtttcgttttggcacag
tccatagtctttagtgcaatggagcaagagcactttagtgagtttctgcgaagtcaccat
ttctgtaaataccagattgaagtgctgaccagtggaactgtttacctggctgacattctc
ttctgtgagtcagccctcttttatttctctgagtacatggaaaaagaggatgcagtgaat
atcttacaattctggttggcagcagataacttccagtctcagcttgctgccaaaaagggc
caatatgatggacaggaggcacagaatgatgccatgattttatatgacaagtacttctcc
ctccaagccacacatcctcttggatttgatgatgttgtacgattagaaattgaatccaat
atctgcagggaaggtgggccactccccaactgtttcacaactccattacgtcaggcctgg
acaaccatggagaaggtaacccagaacttcaaacgtatcaaactacaagaagttttattg
gtagaactcataaaatataaggtgggaaaaccaagcagaatagcacagtggaaattgaag
cagtccagcaaagtgattaagagcagaggccttgagtctggcctgaaaacagttaactgt
aaaacagcttcagacaggtccttcaggaggtttccagaaggaggcattgttatcaaagga
gatgacggctccatgcgtgttactgcccctgaagaccttccagtgggacaagatgtggag
tccagtgtgaaaaaagccagtattaaaatactgaaaaattttgatgaagcgataattgtg
gatgcggcaagtctggatccagaatctttatatcaacggacatatgccgggaagatgaca
tttggaagagtcagtgacttggggcaattcatccgagaatctgagcctgaacctgatgta
aggaaatcaaaaggatccatgttctcacaagctatgaagaaatgggtgcaaggaaatact
gatgaggcccaggaagagctagcttggaagattgctaaaatgatagtcagtgacattatg
cagcaggctcagtatgatcaaccgttagagaaatctacaaaggtgagtcagccccaccga
gagccaggcagctttgagtggcagcgtggtgctagcagcttcagcggaacagggatagta
agagactcactcactgcacttctgctcagttggcttctgcatcgggatcacacagccatc
agcaggactgcccagttgtggctgaagactgacactgcccgatcgccttggaagcctaca
ggaccatcacagacgctttgggtgacttacagtggaggttcgaagccttcttcgcatcct
ccccttgtatctccccaccttaatccacaagtatgggacacctctactccctccttggtg
accgatcatgcacgccttaccatcccattaaaacctaatcacccttactccaatcaacgc
caatatcccatcccatggcatgctttaaaaggattaaagcctgttatcactcgcctgcta
cagcatggtcttctaaagcctataaactctccttacaattcccccattttacctgtccaa
aaaccagacaagtcttacagttcccataactttcaaaatctattttcctcctcacacttg
acacatatactttctgccccccagctccttcagctatgctcagtctttgttgagtctccc
acaattacaattgttcctggcccagacttcaatccgaactcccacattattatggatatc
agaactgacccccatgactgtatctctctgatccacctgacagtcaccacatttccccat
atttccgtctttcctgtttctcaccatgatcacacttggtttattgatggcagttccacc
aggcctaatcaccactcaccagcaaaggcaggctatgctatagtatcctccacatctatc
attgaggctactgctctgcccgcctccactacctctcagcaagccaaactcattgcctta
acttgggccctcactcttgcaaagggactacacgtcaatatttatactgactctaaatat
gccttccgtatcctgcaccaccatgctgttacatgggcagaaagaaatttcctcactaca
caagagtcctccatcattattgcctccttaataaaaacgcttcttaaagtcgctttactt
ccaaaggaagctggagtcattcactgcaagggccatcaaaaggcatcagatgtcatcgct
cagggcaacgcttatgctgataagcagtcactaaacatcatcatctccatttctacagat
ggcacagaggcccagagaggtgaaggaaagcctaaggtcctacagccaggatgtggcaca
atttggaactga

>gi568815581r:19809181_20068463|GENSCAN_predicted_peptide_4|69_aa
MTAIIMTEVYAAVGDYGDFRISGGQGSKAANHTGSRGFCIASNPQAVAGSPEEAGTGVQG
EAARAGQRL

>gi568815581r:19809181_20068463|GENSCAN_predicted_CDS_4|210_bp
atgacggccattatcatgactgaggtgtatgcagctgtcggggattacggcgacttcaga
atttctggtgggcagggctcaaaggcagcaaatcacactggaagtcgagggttctgcatc
gcctcgaacccgcaggccgtggcgggttctcctgaggaagcagggactggggtgcagggt
gaagctgctcgtgccggccagcgcctgtga

>gi568815581r:19809181_20068463|GENSCAN_predicted_peptide_5|90_aa
MLLMKRTSVGHSQKSGQLGQRPRPPGREWSINTGITSTGASVWKEAVVKVLIWAVLSPLH
HMFAFASYIKGWIDPLTEAKSHSKAPAAKV

>gi568815581r:19809181_20068463|GENSCAN_predicted_CDS_5|273_bp
atgcttctcatgaaaaggacctcagtaggacactcacagaagtccgggcaactgggacag
agaccacgacccccaggaagggagtggtcaatcaacacagggatcaccagtacaggagcc
tctgtttggaaggaagctgtggtaaaagtcctaatttgggctgttctctcacctttgcat
catatgttcgcctttgcatcatatatcaaagggtggattgaccctttgacagaagctaag
tcacattccaaagccccagctgccaaagtgtga

>gi568815581r:19809181_20068463|GENSCAN_predicted_peptide_6|422_aa
MIKWDLFQKRKSGSTFENKVLPHIQQWLVIKSNDTSGQEVKRMSEDSLADSGVKLQTFAA
SVTALKGAHLELFVPPGEFVVSLASGVKLQTFELDIKVLKSPPDSGAQLASPSGSGISAT
GGAACQSRALRPHSSALWWSMGLGAVEQGVVLSGRLGPHRSPGGPQLSGATWLSVPGPCD
NPRARRGGGGHLPLPPAAPVPPLRAGQDRPGRPSWAGDRTRDEGTGAPAAKTQHAFPERQ
SRAPTTDCRTPALARPSLQTTRLRRKEPAGGRAGGAASTHRPRWLSAAATPSGHGSGRSL
MLRRGTRAPPAPPAIAARGRARAARGSLGDVVPGPPPAPSSFSRRPGAPSLPALSVSSPY
LLILWSHIIDVWASQARCGPHFRTLHWRFSKGGARTSSFSLIWELEKMQILRPTQPIRFF
LH

>gi568815581r:19809181_20068463|GENSCAN_predicted_CDS_6|1269_bp
atgatcaagtgggacttattccagaaacgcaagtctggttcaacatttgaaaacaaggta
ttgcctcacatacagcagtggctggtcataaagtcaaatgacactagtggccaggaggtc
aagagaatgagtgaggacagtctcgctgactcaggagtgaagctgcagaccttcgcggcg
agtgttacagctcttaagggggcgcatctagagttgttcgttcctcctggtgagttcgtg
gtctcgctagcttcaggagtgaagctgcagaccttcgagctagacataaaggttctcaag
tccccaccagactcaggagcccagctggcttcacccagtggatccggcatcagtgccaca
ggtggagctgcctgccagtcccgcgccctgcgcccgcactcctcagccctctggtggtcg
atgggactgggcgccgtggagcagggggtggtgctgtcagggaggctcgggccgcacagg
agcccaggagggccgcagctgtcgggagccacctggctctcagtcccgggtccctgcgac
aaccctcgggcccggaggggaggaggcggccacctgccgctgccacctgcggcaccggtc
ccaccgctccgggccgggcaggacaggccaggacgtccctcctgggctggggacaggaca
cgcgacgaggggaccggggcccccgcggcgaagacgcagcacgccttcccagaaaggcag
tcccgtgcccccacgacggactgccggacccccgcgctcgcccgcccatcccttcagacc
acgcggctgaggcgcaaagagccggccggcgggcgggctggcggcgcggctagtactcac
cggccccgctggctcagcgccgccgcaacccccagcggccacggctccgggcgctcactg
atgctcaggagagggacccgcgctccgccggcgcctccagccatcgccgccagggggcga
gcgcgagccgcgcggggctcgctgggagatgtagtacccggaccgccgcctgcgccgtcc
tccttcagccggcggccgggggccccctctctcccagctctcagtgtctcatctccctat
ctgctcatcctctggtcgcacataatcgatgtttgggcgtcccaagccagatgtggaccc
catttccgcactctacactggaggttttctaagggtggtgcccggaccagcagcttcagc
ctcatctgggaacttgagaaaatgcagattctccgtcccacccagcctattcggtttttc
ctgcactaa

>gi568815581r:19809181_20068463|GENSCAN_predicted_peptide_7|63_aa
MRKKADHLQSSPEHWSLKTKECCLLSQKGEKVTQHIFTKLECHALFKGCKSHERHERTQA
FTT

>gi568815581r:19809181_20068463|GENSCAN_predicted_CDS_7|192_bp
atgcggaaaaaggcagaccatctgcagtcttctccagaacactggagtctgaagacaaaa
gaatgctgcctactgagccagaagggagagaaagtgacccaacacatctttaccaagtta
gaatgtcacgcattatttaaaggctgcaaaagccatgaaagacatgaaagaacacaagca
tttacaacatga

>gi568815581r:19809181_20068463|GENSCAN_predicted_peptide_8|51_aa
XLPNPLKHNRKSPGSLFCTYHRGIHSASSKLTLHDTSGLALLRTPVLAAVS

>gi568815581r:19809181_20068463|GENSCAN_predicted_CDS_8|156_bp
nngcttcctaatcccttgaagcacaatcgaaaaagccctggatctcttttctgcacatat
catcgcggaattcattcggcttccagcaagctgacactccatgatacaagcggcctcgcc
cttctccggacgccagtccttgctgcggttagctag