GENSCAN 1.0	Date run:  7-Nov-116	Time: 01:16:36

Sequence gi568815575r:19436420_19936283 : 499864 bp : 43.09% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +  15624  16031  408  2  0    7   42   398 0.782  22.32
 1.02 PlyA +  16296  16301    6                               1.05

 2.23 PlyA -  19394  19389    6                               1.05
 2.22 Term -  20600  20490  111  2  0   77   48   132 0.436   6.66
 2.21 Intr -  23734  23566  169  0  1   71   80   219 0.996  19.35
 2.20 Intr -  27987  27794  194  0  2   85   46   172 0.895  10.99
 2.19 Intr -  30279  30247   33  0  0   76   89    38 0.663   1.12
 2.18 Intr -  50086  50063   24  1  0  125   98   -24 0.266   0.52
 2.17 Intr -  52548  52409  140  1  2  120   87   140 0.987  17.28
 2.16 Intr -  59026  58979   48  2  0  129   87    -2 0.241   2.45
 2.15 Intr -  72705  72568  138  1  0   88   20    86 0.014   2.24
 2.14 Intr -  78894  78482  413  2  2   56   94   494 0.044  40.63
 2.13 Intr -  90676  90554  123  0  0   36   81    63 0.079   0.10
 2.12 Intr -  92878  92781   98  1  2   32   97    88 0.159   2.91
 2.11 Intr -  94119  94032   88  2  1   55   70    85 0.075   3.37
 2.10 Intr - 100595 100507   89  2  2   93   69    16 0.093  -1.03
 2.09 Intr - 101361 101298   64  2  1   99   96   102 0.941  10.82
 2.08 Intr - 105774 105506  269  0  2  141   81   235 0.517  24.43
 2.07 Intr - 109631 109503  129  2  0   46   89    83 0.954   5.09
 2.06 Intr - 113664 113555  110  1  2   84   84    31 0.480   2.30
 2.05 Intr - 132769 132684   86  0  2   52   97   126 0.543   9.36
 2.04 Intr - 140015 139991   25  0  1   92   66    -2 0.009  -4.92
 2.03 Intr - 150400 150332   69  2  0   16   96   102 0.721   2.95
 2.02 Intr - 150909 150850   60  1  0   82   89    47 0.780   2.91
 2.01 Init - 152690 152636   55  2  1   96   86    52 0.955   7.26
 2.00 Prom - 154563 154524   40                              -0.36

 3.15 PlyA - 155222 155217    6                               1.05
 3.14 Term - 165231 165113  119  1  2   80   43    81 0.797   1.50
 3.13 Intr - 167026 166804  223  1  1   17   69   135 0.897   2.20
 3.12 Intr - 171626 171519  108  2  0  148  101   139 0.999  21.68
 3.11 Intr - 195539 195445   95  0  2   93   92    86 0.926   9.18
 3.10 Intr - 209056 208981   76  1  1  105   70    59 0.022   4.89
 3.09 Intr - 247609 247404  206  2  2   95   95   197 0.988  20.02
 3.08 Intr - 251272 251198   75  2  0   81   79    48 0.832   2.69
 3.07 Intr - 259322 259193  130  2  1  128   80   148 0.999  18.27
 3.06 Intr - 270565 270462  104  2  2   84   99   124 0.949  12.99
 3.05 Intr - 282350 282323   28  2  1  102   41    24 0.025  -3.21
 3.04 Intr - 288271 288223   49  0  1   68   78    71 0.111   2.78
 3.03 Intr - 304946 304877   70  0  1   65   78    75 0.534   2.44
 3.02 Intr - 310022 309899  124  2  1  107   64    96 0.794   9.26
 3.01 Init - 327043 327005   39  1  0   64  115    50 0.595   5.48
 3.00 Prom - 343493 343454   40                              -2.46

 4.00 Prom + 356575 356614   40                              -1.86
 4.01 Init + 375328 375456  129  0  0   86   81   139 0.930  13.15
 4.02 Term + 375702 375812  111  2  0   35   48    91 0.506  -1.64
 4.03 PlyA + 379527 379532    6                               1.05

 5.05 PlyA - 379583 379578    6                               1.05
 5.04 Term - 383873 383632  242  0  2   33   32   119 0.066  -3.01
 5.03 Intr - 399863 399732  132  0  0  120   68   196 0.796  21.42
 5.02 Intr - 407119 406966  154  1  1   55   95    65 0.230   3.55
 5.01 Init - 425661 425554  108  0  0   49   77   111 0.036   6.32
 5.00 Prom - 436867 436828   40                              -3.76

 6.00 Prom + 440406 440445   40                              -5.56
 6.01 Init + 443027 443080   54  1  0   67   73    55 0.219   3.18
 6.02 Intr + 448512 448576   65  2  2   76  110    20 0.364   0.52
 6.03 Intr + 449911 450125  215  1  2   63   96    93 0.524   5.96
 6.04 Intr + 450536 450740  205  0  1   73   45    84 0.310   0.86
 6.05 Term + 456863 456896   34  2  1  116   44    23 0.178  -2.24
 6.06 PlyA + 457882 457887    6                               1.05

 7.04 PlyA - 463680 463675    6                               1.05
 7.03 Term - 487817 487719   99  2  0   74   42   126 0.775   4.73
 7.02 Intr - 493521 493366  156  0  0  106   96    37 0.924   6.51
 7.01 Intr - 499479 499390   90  0  0  110   67     7 0.482   0.99

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  78842  78482  361  2  1   76   94   518 0.955  46.44
S.002 Term + 142453 142931  479  2  2   89   44   158 0.815   6.50
S.003 Intr - 198368 198305   64  2  1  107   45    45 0.804   0.39


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:19436420_19936283|GENSCAN_predicted_peptide_1|135_aa
SRILSEKRREEKRREEKRREEKRREEKRREEKRREEKRREEKRREEKRREEKRREEKRRE
EKRREEKRREEKRREEKRREEKRREEKRREEKRREEKRREEKRKRREEKRREKRKEKRKE
KKRKEKKKEKEKEKN

>gi568815575r:19436420_19936283|GENSCAN_predicted_CDS_1|408_bp
agcaggattctgtcagagaagagaagagaagagaagagaagagaagagaagagaagagaa
gagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaa
gagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaa
gagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaa
gagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaa
gagaagagaaagagaagagaagagaagagaagagagaaaagaaaagagaaaagaaaagaa
aagaaaagaaaagaaaagaagaaagaaaaagaaaaagaaaaaaattaa

>gi568815575r:19436420_19936283|GENSCAN_predicted_peptide_2|844_aa
MAVSRFSQASKEELEYAEAPGSRHSTFCLYGFDYSRYLSSNVEASRNVGWLPSRYRAVVI
SVLILVPGTWGDSPKIDLAGSSLSGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSR
PKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHISLAHRGVDASKKTSKTVTISQVS
DNKASLPPKPGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHRANSPSLFGTEGKPKMEPAA
SSQAAVEELRTQVRELRSIIETMKDQQKREIKQLLSELDEEKKIRLRLQGVRALSPVASD
STLLLPNGRECVGVLIDRRAVFLEEVNLERGEGHELKEELSEEASGLKGAYGDVPDAMRG
AECDRVPALKELGVKWAEVGRLPESEILESNPTICVLTSPLSNSDARISLKTTIMGGSTH
SHGSQPLATRPGEGRAGGHMESGGGNAPAGALGAASESPQCPPPPGVEGAAGPAEPDGAA
EGAAGGSGEGESGGGPRRALRAVYVRSESSQGGAAGGPEAGARQCLLRACEAEGAHLTSV
PFGELDFGETAVLDAFYDAVFHGVLCGSKSWGCVTSTYSGLDELQENGRQALDVSKSKWM
LLEKEIKTRSPRQRVPLTMTLDVAVVDMSDVSRQPSLFYHLGVRESFDMANNVILYHDTD
ADTALSLKDMVTQKNTEVFDHNINQFQASSGNYYFIPYIVTPCADYFCCESDAQRRASEY
MQPNWDNILGPLCMPLVDRFISLLKDIHVTSCVYYKETLLNDIRKAREKYQGEELAKELA
RIKLRMDNTEVLTSDIIINLLLSYRDIQDYDAMVKLVETLEMLPTCDLADQHNIKFHYAF
ALNR

>gi568815575r:19436420_19936283|GENSCAN_predicted_CDS_2|2535_bp
atggcagtgtcacgtttcagccaggcttcgaaggaagagctggagtatgctgaagcccct
ggcagccgccattctactttctgtctctatggatttgactactccaggtacctcagctca
aatgtagaggcaagtcgcaacgtgggctggctgcccagtcgatacagagctgtggtcatc
tcagtgcttattctagtgcctggcacatggggtgacagtccaaagattgacttggccggc
agttcgctatctggcatcctggacaaagatctctcggaccgcagcaatgacattgactta
gaaggttttgactccgtggtatcatctactgagaaactcagtcatccgaccacaagcaga
ccaaaagctacagggaggcggcctccgtcccagtccctcacatcttcatccctttcaagc
cctgatatcttcgactccccaagtcccgaagaggataaggaggaacacatttcacttgcg
cacagaggagtggacgcgtcaaagaaaacttccaagactgttaccatatcccaagtgtct
gacaacaaagcatccctgccgcccaagccggggaccatggcagcaggtggcggtgggcca
gcccctctgtcctcagcggcgccctcccccctgtcatcctctttgggaacagctggacac
agagccaactccccgtctctgttcggcacggaaggaaaaccaaagatggagcctgcggcc
agcagccaggcggccgtggaggagctaaggacacaggtccgcgagctgaggagcatcatc
gagaccatgaaggaccagcagaaacgagagattaaacagttattgtctgagttggatgaa
gagaagaaaatccggcttcggttgcagggcgttagagctctgtcccctgtagcctctgat
tcaacactgctgttaccaaatggcagagaatgcgtgggagttctgattgaccgaagggca
gtcttcttggaggaagtgaatctggaaagaggagaaggacatgaattgaaagaggaatta
tcagaggaagcttcaggcctgaagggtgcttatggtgatgtgccagatgccatgagaggc
gctgaatgcgacagagtccctgccctgaaggagctcggtgtcaaatgggcagaagtaggc
agacttcctgaatcagaaattctggaaagcaacccaacaatctgtgttttaacaagtcct
ctcagtaattctgatgcacgcataagtttgaagaccaccatcatggggggatcaactcat
tcccacggatcgcagccgctggccactcgcccaggggaagggcgcgcaggcgggcacatg
gagagcggcggtgggaatgctccggccggggccctcggggcggcgagcgagtcccctcag
tgcccgccgccgccgggggtggagggcgcggccgggccggcggagcccgacggggcggcg
gagggcgcggcaggcggcagcggcgagggcgagagtgggggcgggccgcggcgggctctg
cgggcagtatacgtgcgcagtgagagctcccagggcggcgcggccggcggcccggaggct
ggggcgcggcagtgcctgctgcgggcctgcgaggccgagggcgctcacctcacctccgtg
cccttcggggagctggacttcggggagacggccgtgctcgacgccttctacgacgcagtg
tttcatggggtcctgtgtgggtctaaatcttggggctgtgtcactagcacatatagtgga
ttggatgagctgcaggaaaatggcaggcaggccttggacgtaagcaagagcaagtggatg
ctgttggaaaaggaaattaaaactcgatcccccaggcaacgagtaccactcactatgaca
cttgatgttgctgtggtagacatgagcgatgtctccagacagccttccctcttctaccat
cttggagtccgagaaagctttgacatggccaataatgtgatcttgtaccatgacaccgat
gccgacactgctctctctttgaaggacatggtaactcaaaaaaacacagaagtctttgac
cataacatcaaccaatttcaggcatccagtggaaattattatttcatcccatacatcgtg
acaccgtgcgctgattatttttgctgcgagagtgatgcccagagacgagcctccgagtac
atgcagcccaactgggacaacatcctgggcccgctgtgcatgcctttggtggacaggttc
attagcctccttaaggacatccacgtgacctcatgtgtttattacaaagaaaccttgtta
aatgacatccggaaagccagagagaaataccaaggtgaggaactggcgaaggagctagct
cggatcaagctccgcatggataatactgaggttctgacctcagacatcatcattaactta
ctcctgtcctaccgtgatatccaggactatgatgcgatggtgaagctggtggaaacactg
gagatgctgcctacgtgtgatttggccgatcagcataacattaaattccactatgcgttt
gcactgaataggtaa

>gi568815575r:19436420_19936283|GENSCAN_predicted_peptide_3|481_aa
MSKLITEKDKWITEIKKEMKKDPLTNKAPEKPLHEVPSGNSLLSSETILRTNKREINAER
SDGLKDVICNRSSSDATRSQQTMAHGPNLALAVFTSHNQLSLGGERRRRRCQVAFSYLPQ
NDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDEQLSK
SRKTTFEGTILYRAAPGKTEGHRRYYSLRETTGSESDGGDSSSTKSEGANGTVATAAIQP
KKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPATTATPDSSKTEMDSRTK
SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP
PDFEKEGNRLNQVAGSQLTHHNKNSDVSQSGTQRSACPGHFVPYGSDSLEAGFHQKPRLS
GAFREGKESKQEEFVVLTKGLAASPTDTARELSGMCGGGLPKSRIAENQAETYFQNLTIF
L

>gi568815575r:19436420_19936283|GENSCAN_predicted_CDS_3|1446_bp
atgagtaagctcatcacagaaaaagacaagtggataacggaaataaagaaagagatgaag
aaagaccctctcaccaacaaagctccagaaaagcccctgcacgaagtgcccagtggaaac
tctttgctgtcttctgaaacgattttaagaaccaataagagagagattaatgctgaaaga
tctgacggtttaaaagatgttatttgtaacaggtctagctctgatgctacgagaagtcag
caaacgatggcccatgggccaaacctggcactggctgtttttaccagccacaaccagttg
tcattgggaggcgagcgacggaggcgccggtgccaggtggcattcagctacctgccccag
aatgacgatgaacttgagctgaaagttggcgacatcatagaggtggtaggagaggtagag
gaaggatggtgggaaggtgttctcaacgggaagactggaatgtttccttccaacttcatc
aaggagctgtcaggggagtcggatgagcttggcatttcccaggatgagcagctatccaag
tcaagaaagactacctttgaagggacaattctgtaccgagctgcaccgggaaagacggag
ggccacagacgctattacagtttaagggaaaccacaggctccgagagtgatgggggtgac
tcaagcagcaccaagtctgaaggtgccaacgggacagtggcaactgcagcaatccagccc
aagaaagttaagggagtgggctttggagacattttcaaagacaagccaatcaaactaaga
ccaaggtcaattgaagtagaaaatgactttctgccggtagaaaagactattgggaagaag
ttacctgcaactacagcaactccagactcatcaaaaacagaaatggacagcaggacaaag
agcaaggattactgcaaagtaatatttccatatgaggcacagaatgatgatgaattgaca
atcaaagaaggagatatagtcactctcatcaataaggactgcatcgacgtaggctggtgg
gaaggagagctgaacggcagacgaggcgtgttccccgataacttcgtgaagttacttcca
ccggactttgaaaaggaagggaatagacttaatcaggtagcaggcagccagcttactcat
cacaacaagaactcagatgtcagccagtctggaacgcagaggtctgcctgccccggtcat
tttgtcccctatgggtctgattccttagaagccgggttccaccagaagccacgtttatcc
ggtgctttccgggagggcaaggaatcaaaacaagaggagtttgttgttcttaccaagggt
ctggcagcctcacccacagacaccgccagagaacttagtgggatgtgtggaggaggtctc
ccaaagtccagaattgctgaaaatcaagctgagacttacttccagaacctcaccatattc
ctctaa

>gi568815575r:19436420_19936283|GENSCAN_predicted_peptide_4|79_aa
MASFDSQEKYNPKSFSMATSGTAGSQHSHNWNWNQLHNLYWQPTHDIISLLVFMRKSWWS
QRKYDNNEKLSFMTSKIDS

>gi568815575r:19436420_19936283|GENSCAN_predicted_CDS_4|240_bp
atggcttcgtttgacagccaggaaaagtacaaccccaagagcttcagcatggccaccagt
ggcacagctggttcacagcacagccacaactggaactggaaccaacttcacaacctttac
tggcaaccaacacatgatatcatctctttgttagtcttcatgagaaaatcctggtggtcc
cagaggaagtatgacaataatgaaaagctctccttcatgacgagcaaaatagacagctaa

>gi568815575r:19436420_19936283|GENSCAN_predicted_peptide_5|211_aa
MKHGFPSAILKTKHNQSSGYQEAEVVQSKQKRSRAKWCVCEDTKRKTWLVCRSALLYAEI
PTVSVALTWEIQTPKPFSPDTNGRALDVEAIVEFDYQAQHDDELTISVGEIITNIRKEDG
GWWEGQINGRRALDRITKQKISKGIEGLNNIINQEVVIDVYRISYTETAQNTFFSSTHEI
SAKLNHILGHKTNLNIFKGIEIIKKVFFDHK

>gi568815575r:19436420_19936283|GENSCAN_predicted_CDS_5|636_bp
atgaaacacggctttcccagtgccatcctgaagacaaagcacaatcagagcagtggctac
caagaggcggaagtggtccagtcaaagcaaaagcggtcaagagcaaagtggtgtgtttgt
gaagacaccaaaaggaaaacgtggctggtatgtaggtcagctttattgtacgcggagatc
cccacagtatctgtggccttgacctgggaaattcagacccccaaacccttcagccctgac
actaatgggagggcactggatgtggaggccatagtggagtttgactaccaggcccagcac
gatgatgagctgacgatcagcgtgggtgaaatcatcaccaacatcaggaaggaggatgga
ggctggtgggagggacagatcaacggcaggagagcacttgacagaattactaaacagaaa
atcagcaagggtatagaaggcctgaacaacataatcaaccaagaagttgtaattgatgtt
tacagaatatcctacacagaaacagcacaaaacacatttttttcaagtacccatgaaata
tctgccaagttaaaccatatcctgggtcataaaactaacctcaatatatttaagggaatt
gagataataaaaaaggtgttctttgaccataagtaa

>gi568815575r:19436420_19936283|GENSCAN_predicted_peptide_6|190_aa
MGHDCQGSFQHFNARDQYKTKYKIQFYYVIHQEKTHYQASLPMPGLGTSKNNLPEAEKQK
LAVSKNITWVDQTFNSPSNHKCLANKVAASLGSKVVPMLRGLNQMGPRGFKAQRRARSGA
KMAKTKLSPPTRKTNHTPCIPQPEPPGASPRDRLLRPPRVPVGAARGLGGHTGASGSEWG
QGLTLSPKLE

>gi568815575r:19436420_19936283|GENSCAN_predicted_CDS_6|573_bp
atgggccatgactgccaaggctccttccagcacttcaatgccagggaccaatataaaacg
aaatataagatacagttttactatgttatccatcaagagaaaactcattatcaggccagc
cttcctatgcctggcctaggaacatccaaaaataatctgccagaggctgaaaaacagaag
ctggctgtcagcaagaacattacctgggtagaccaaacatttaatagcccaagtaatcat
aagtgccttgccaataaagtggcagcttctctgggcagcaaggtggttccaatgctccgg
ggtctaaatcaaatgggacccagggggttcaaagcgcagaggagggcgcgctcgggtgca
aaaatggccaagacaaaactctccccgcccacccgaaaaaccaaccacaccccctgcatc
cctcagcccgagccgcccggggccagcccccgtgatcgtctgctcaggcccccgcgggtt
cccgtcggcgccgcgcgcgggctcggcgggcacacgggcgcaagtgggagtgaatgggga
cagggtctgactctgtcgcccaagctggagtga

>gi568815575r:19436420_19936283|GENSCAN_predicted_peptide_7|114_aa
NYTTQRKDIITHKPFEVEGNHRNTRVRPFKSNFRGGRCQPNYKSGLVQKSLYIQAKYQRL
RFTGPRGFITHKFRERLMRKKKISAITSVDVFNPDYSPDLQIVSCLPDALTWMS

>gi568815575r:19436420_19936283|GENSCAN_predicted_CDS_7|345_bp
aattatactacgcagagaaaagacataattactcacaaaccatttgaggttgagggaaac
caccgaaacacaagagtaagaccttttaagagcaactttagaggtggcagatgccagccc
aattataaatcaggcctggtacagaagagcttgtacattcaggctaagtatcagcgttta
cggttcactggcccaaggggatttatcactcataagttcagagaaagattaatgagaaaa
aagaagatttcagccatcacctctgttgatgtcttcaaccctgactactctccagacctc
cagattgtcagctgcctcccagatgccctcacatggatgtcctaa